FC931613

Overview
NameFC931613
Unique NameFC931613
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length573
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_PYRIL (Elongation factor 1-alpha OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=tuf PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 8.998e-49
Identity = 93/181 (51.38%), Postives = 120/181 (66.30%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLSL 544
            T K +    D P H+DF+KNMI G SQA+ A+ +I +  G FE  I   GQ REH  L  TLGV+Q++   NKMD     Y + RY++I  EVS  LK +GY+P K+ F+P+S  +GDN+  +S+N  WY GPTLL+ALD    P RP DKPLR+P+QDV+ I G GTV VGRVETGVL +
Sbjct:   92 TNKLFITIIDLPGHRDFIKNMIVGASQADAALFVISARPGEFETAIGPQGQGREHLFLIRTLGVQQIVVAVNKMDIVN--YDQKRYEQIKAEVSKLLKLLGYDPSKIHFIPVSAIKGDNVKTKSSNTPWYNGPTLLEALDTFQPPPRPVDKPLRMPIQDVFTITGAGTVVVGRVETGVLKV 270          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAE (Elongation factor 1-alpha OS=Pyrobaculum aerophilum GN=tuf PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.175e-48
Identity = 92/181 (50.83%), Postives = 121/181 (66.85%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLSL 544
            T K +    D P H+DFVKNMI G SQA+ A+ +I +  G FEA I   GQ REH  L  TLGV+Q++   NKMD     Y + RY+++  EVS  LK +GY+P K+ F+P+S  +GDN+  +S+N  WY GPTLL+  D+   P+RP DKPLR+P+QDV+ I G GTV VGRVETGVL +
Sbjct:   92 TNKLFITIIDLPGHRDFVKNMIVGASQADAALFVISARPGEFEAAIGPQGQGREHLFLIRTLGVQQIVVAVNKMDVVN--YDQKRYEQVKAEVSKLLKLLGYDPSKIHFIPVSAIKGDNIKTKSSNTPWYTGPTLLEVFDSFQPPQRPVDKPLRMPIQDVFTITGAGTVVVGRVETGVLKV 270          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_METMA (Elongation factor 1-alpha OS=Methanosarcina mazei GN=tuf PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.535e-48
Identity = 91/179 (50.84%), Postives = 125/179 (69.83%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T K+Y    D P H+DFVKNMITG SQA+ AVL++ +  G          QT+EH  L+ TLG+ Q+I   NKMDA    YS+ARY E+V++VS  LK +G+ P ++PF+P S F GDN+++ S    WYKGP +++AL+++ EP++PS  PLR+P++D Y I GIGTVPVGRVETGV+
Sbjct:   82 TDKFYFTVVDCPGHRDFVKNMITGASQADAAVLVVAAPDGVM-------AQTKEHIFLSRTLGINQLIVAINKMDAVD--YSEARYKEVVEQVSGILKMIGFKPSEIPFIPTSAFHGDNIMKLSDKTPWYKGPAIMEALNSLKEPEKPSTLPLRIPVEDAYTISGIGTVPVGRVETGVM 251          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_METHJ (Elongation factor 1-alpha OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=tuf PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.005e-48
Identity = 93/179 (51.96%), Postives = 122/179 (68.16%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T KYY    D P H+DFVKNMITG SQA+ AV+++ +  G  E       QT+EH  L+ TLG+KQ+I   NKMDA    Y +AR++++  +V + LK VG NP+ V F+PIS FEGDN+ + S  + WYKG TL   LD +  P +P++KPLR+P+QD Y I GIGTVPVGRVETG+L
Sbjct:   82 TDKYYFTVVDCPGHRDFVKNMITGASQADAAVIVVAAPDGVME-------QTKEHVFLSKTLGIKQLIVAVNKMDAAN--YDEARFNQVKSDVGALLKMVGTNPDTVKFIPISAFEGDNITKNSDKMPWYKGKTLFGLLDELEVPDKPTEKPLRVPIQDAYSISGIGTVPVGRVETGIL 251          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_METAC (Elongation factor 1-alpha OS=Methanosarcina acetivorans GN=tuf PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.618e-48
Identity = 91/179 (50.84%), Postives = 122/179 (68.16%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T KYY    D P H+DFVKNMITG SQA+ A+L++ +  G          QT+EH  L+ TLG+ Q+I   NKMDA   +YS+A+Y E+V++VS  LK +G+ P  +PF+P S F GDN+ + S    WYKGP ++ ALD + EP++PS  PLR+P++D Y I GIGTVPVGRVETGV+
Sbjct:   82 TPKYYFTVVDCPGHRDFVKNMITGASQADAAILVVAAPDGVM-------AQTKEHIFLSRTLGINQLIIAINKMDAV--EYSEAKYKEVVEQVSGLLKMIGFKPANIPFIPTSAFMGDNITKLSEKTPWYKGPVIMQALDELKEPEKPSTLPLRIPVEDAYTISGIGTVPVGRVETGVM 251          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_METB6 (Elongation factor 1-alpha OS=Methanoregula boonei (strain 6A8) GN=tuf PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.419e-48
Identity = 94/179 (52.51%), Postives = 120/179 (67.04%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T KYY    D P H+DFVKNMITG SQA+ A+L++ +  G  E       QT+EH  LA TLG+ Q+I   NKMDA   K+ + R++E+ KE+S  +K VGY PE+  F+PIS  +G N+   S    WYKGP L+ ALD   EP +P+DKPLRLP+QD Y I GIGTVPVGRVETG++
Sbjct:   82 TPKYYFTVVDCPGHRDFVKNMITGASQADAAILVVAAPDGVME-------QTKEHVFLARTLGITQIIIAINKMDAV--KFDEKRFNEVKKELSDLIKMVGYKPEETLFIPISSLQGINIKANSPETPWYKGPALIPALDTFKEPSKPTDKPLRLPIQDSYSISGIGTVPVGRVETGIM 251          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_METBU (Elongation factor 1-alpha OS=Methanococcoides burtonii (strain DSM 6242) GN=tuf PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 5.832e-48
Identity = 94/179 (52.51%), Postives = 119/179 (66.48%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T KYY    D P H+DFVKNMITG SQA+ AVL++ +  G          QT+EH  L+ TLG+ Q+I   NKMDA   KYS+ RY+E+ KEVS  L  VG+  + VPF+P S FEGDN+ + S N  WY GP LL+ L+N+  P +P   PLR+P+QD Y I GIGTVPVGRVETG++
Sbjct:   81 TDKYYFTVVDCPGHRDFVKNMITGASQADAAVLVVAAPDGVM-------AQTKEHVFLSRTLGINQLIVAINKMDAA--KYSEDRYNEVKKEVSQLLGMVGFKADDVPFIPTSAFEGDNITKSSANTPWYTGPALLECLNNLTVPSKPDTLPLRIPVQDAYTISGIGTVPVGRVETGIM 250          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_METLZ (Elongation factor 1-alpha OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=tuf PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 9.948e-48
Identity = 94/179 (52.51%), Postives = 119/179 (66.48%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T KY     D P H+DFVKNMITG SQA+ A++++  T G  E       QT+EH  L+ TLG+ Q+I   NKMDA    YS+ +Y+E   +++  +  VG+ P + PF+PIS F GDN+ E S N  WYKGPTLL ALD    P  P+DKPLRLP+QDVY I G+GTVPVGRVETG+L
Sbjct:   82 TPKYNFTVVDCPGHRDFVKNMITGASQADAAIIVVSGTEGPME-------QTKEHVFLSKTLGINQIIVAINKMDAVN--YSEEKYNEAKDKMTKLIMSVGFKPAETPFIPISAFCGDNIKEASANTPWYKGPTLLAALDLFKMPDMPTDKPLRLPIQDVYTISGVGTVPVGRVETGIL 251          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_METJA (Elongation factor 1-alpha OS=Methanocaldococcus jannaschii GN=tuf PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.299e-47
Identity = 94/180 (52.22%), Postives = 127/180 (70.56%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKV-GYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T KY     D P H+DF+KNMITG SQA+ AVL++D      + GI    QTREH  LA TLG+KQ+    NKMD  T  YS+  Y+++ K +S  L KV GYNP+++ F+P +  +GDN+++RS N+ WYKGPTL++ALD    P++P++ PLR+P+QDVY I G+GTVPVGRVETG+L
Sbjct:   82 TQKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVD--VNDAKTGIQP--QTREHMFLARTLGIKQIAVAINKMD--TVNYSQEEYEKMKKMLSEQLLKVLGYNPDQIDFIPTASLKGDNVVKRSENMPWYKGPTLVEALDKFQPPEKPTNLPLRIPIQDVYSITGVGTVPVGRVETGIL 255          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_THESM (Elongation factor 1-alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=tuf PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.216e-47
Identity = 95/181 (52.49%), Postives = 126/181 (69.61%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLSL 544
            T   Y    DAP H+DFVKNMITG SQA+ AVLI+ +T G          QT+EHA LA TLG+  +I   NKMDA   KY + R+ E+  +V+  L+ +GY  +  P +PIS +EGDN++++S  + WY GPTL++ALD I EP++P+DKPLR+P+QDVY I G+GTVPVGRVETGVL +
Sbjct:   80 TPHRYITIIDAPGHRDFVKNMITGASQADAAVLIVAATDGVMP-------QTKEHAFLARTLGINHIIVGVNKMDAV--KYDEKRFKEVATQVTKLLQMLGY--KNFPVIPISAWEGDNVVKKSDKMPWYNGPTLIEALDQIPEPEKPTDKPLRIPIQDVYSIKGVGTVPVGRVETGVLKV 249          
The following BLAST results are available for this feature:
BLAST of FC931613 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_PYRIL8.998e-4951.38Elongation factor 1-alpha OS=Pyrobaculum islandicu... [more]
EF1A_PYRAE1.175e-4850.83Elongation factor 1-alpha OS=Pyrobaculum aerophilu... [more]
EF1A_METMA1.535e-4850.84Elongation factor 1-alpha OS=Methanosarcina mazei ... [more]
EF1A_METHJ2.005e-4851.96Elongation factor 1-alpha OS=Methanospirillum hung... [more]
EF1A_METAC2.618e-4850.84Elongation factor 1-alpha OS=Methanosarcina acetiv... [more]
EF1A_METB63.419e-4852.51Elongation factor 1-alpha OS=Methanoregula boonei ... [more]
EF1A_METBU5.832e-4852.51Elongation factor 1-alpha OS=Methanococcoides burt... [more]
EF1A_METLZ9.948e-4852.51Elongation factor 1-alpha OS=Methanocorpusculum la... [more]
EF1A_METJA1.299e-4752.22Elongation factor 1-alpha OS=Methanocaldococcus ja... [more]
EF1A_THESM2.216e-4752.49Elongation factor 1-alpha OS=Thermococcus sibiricu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34107B01EF PostHarvP1 Citrus clementina cDNA clone C34107B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931613 ID=FC931613; Name=FC931613; organism=Citrus clementina; type=EST; length=573bp
GACCACCAAGTACTACTGCGCCGGCTTTGATGCTCCCGAACATCAGGACT
TTGTCAAGAACATGATTACCGGTACCTCACAGGCTGAGTGTGCCGTCCTC
ATCATTGACTCCACCACCGGCAGTTTTGAAGCTGGTATCTCCAAGGATGG
TCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGA
TGATTTGCTGCTGTAACAAGATGGACGCCACCACCCCCAAGTATTCAAAG
GCTAGGTACGATGAAATTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGT
TGGATACAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGG
GTGACAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGTCCA
ACCCTGCTGGACGCTCTTGACAATATCAATGAGCCGAAGAGGCCCTCAGA
CAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCATTG
GAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAGCCTGGTATGG
TGGTGACGTTTGGCCCTCTGGAT
back to top