FC931613

Overview
NameFC931613
Unique NameFC931613
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length573
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_METBF (Elongation factor 1-alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=tuf PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.895e-47
Identity = 91/179 (50.84%), Postives = 121/179 (67.60%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T KYY    D P H+DFVKNMITG SQA+ AVL++ +  G          QT+EH  L+ TLG+ Q+I   NKMDA   +YS+ RY E+V++VS  LK +G+ P  +PFVP S F GDN++  S    WYKG T+++AL+N+  P++PS  PLR+P++D Y I GIGTVPVGRVETG +
Sbjct:   82 TDKYYFTVVDCPGHRDFVKNMITGASQADAAVLVVAAPDGVM-------AQTKEHIFLSRTLGINQLIVAINKMDAV--EYSEKRYKEVVEQVSGILKMIGFKPGDIPFVPTSAFYGDNVVNHSEKTPWYKGVTMMEALNNLKVPEKPSTLPLRIPVEDAYTISGIGTVPVGRVETGTM 251          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_METST (Elongation factor 1-alpha OS=Methanosphaera stadtmanae (strain DSM 3091) GN=tuf PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 8.422e-47
Identity = 90/179 (50.28%), Postives = 122/179 (68.16%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T KY     D P H+DFVKNMITG SQA+ AVL++ +  G          QT+EH  L+ TLG+ Q+I   NKMD     YS+ +++E+ +E+ + +  VG+ P  VPF+P+S FEGDN+ E+S+N  WYKG TL+  LD ++EP +P D PLRLP+QDVY I G+GTVPVGR+ETG+L
Sbjct:   72 TQKYEYTVVDCPGHRDFVKNMITGASQADAAVLVVAANDGIMP-------QTKEHIFLSRTLGINQLIIAINKMDVVD--YSEDKFNELKEELGALISTVGFKPSDVPFIPVSAFEGDNISEKSSNTPWYKGNTLVQELDALDEPDKPVDLPLRLPIQDVYSITGVGTVPVGRIETGIL 241          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_METS3 (Elongation factor 1-alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=tuf PE=3 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.100e-46
Identity = 91/179 (50.84%), Postives = 121/179 (67.60%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T KY     D P H+DFVKNMITG SQA+  VL++ +  G          QT+EH  L+ TLG+ Q+I   NK+D     Y +A+++E+  EVS+ +K VG+NP  VPF+P+S FEGDN+ + S N  WYKG TL+ ALDN+  P++P   PLR+P+QDVY I G+GTVPVGRVETGV+
Sbjct:   72 TKKYDYTVVDCPGHRDFVKNMITGASQADAGVLVVAADDGVMP-------QTKEHVFLSKTLGINQLIVAINKIDLVD--YDEAKFNELKDEVSALIKTVGFNPADVPFIPVSAFEGDNIKDASPNTSWYKGDTLMQALDNLAAPEKPVSLPLRIPIQDVYSITGVGTVPVGRVETGVM 241          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_METPE (Elongation factor 1-alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tuf PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.100e-46
Identity = 88/179 (49.16%), Postives = 121/179 (67.60%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T K+Y    D P H+DFVKNMITG SQA+ A+L++ +  G  E       QT+EH  LA TLG+ Q++   NKMDA    Y + R++E+ KE++  +  VGY   ++ F+P+S F+G N+ ++S    WY GPTLL+ALD   EP +P+DKP RLP+QDVY I GIGTVPVGR+ETG++
Sbjct:   82 TAKFYFTVVDCPGHRDFVKNMITGASQADAAILVVAAPDGVME-------QTKEHVFLARTLGITQLVIAINKMDAVN--YDQKRFEEVKKELTQLIGMVGYKAAEILFIPMSSFKGVNISKKSPETPWYTGPTLLEALDTFKEPDKPTDKPFRLPIQDVYSISGIGTVPVGRIETGIM 251          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_PYRWO (Elongation factor 1-alpha OS=Pyrococcus woesei GN=tuf PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 7.129e-46
Identity = 92/179 (51.40%), Postives = 123/179 (68.72%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T   Y    DAP H+DFVKNMITG SQA+ AVL++ +T G          QT+EHA LA TLG+K +I   NKMD     Y++ R++E+  +V   LK +GY  +  P +PIS +EG+N++++S  + WY GPTL++ALD I EP++P DKPLR+P+QDVY I G+GTVPVGRVETG L
Sbjct:   82 TPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATDGVMP-------QTKEHAFLARTLGIKHIIVAINKMDMVN--YNQKRFEEVKAQVEKLLKMLGY--KDFPVIPISAWEGENVVKKSDKMPWYNGPTLIEALDQIPEPEKPVDKPLRIPIQDVYSIKGVGTVPVGRVETGKL 249          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_PYRFU (Elongation factor 1-alpha OS=Pyrococcus furiosus GN=tuf PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 7.129e-46
Identity = 92/179 (51.40%), Postives = 123/179 (68.72%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T   Y    DAP H+DFVKNMITG SQA+ AVL++ +T G          QT+EHA LA TLG+K +I   NKMD     Y++ R++E+  +V   LK +GY  +  P +PIS +EG+N++++S  + WY GPTL++ALD I EP++P DKPLR+P+QDVY I G+GTVPVGRVETG L
Sbjct:   80 TPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATDGVMP-------QTKEHAFLARTLGIKHIIVAINKMDMVN--YNQKRFEEVKAQVEKLLKMLGY--KDFPVIPISAWEGENVVKKSDKMPWYNGPTLIEALDQIPEPEKPVDKPLRIPIQDVYSIKGVGTVPVGRVETGKL 247          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_METTH (Elongation factor 1-alpha OS=Methanobacterium thermoautotrophicum GN=tuf PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.588e-45
Identity = 90/179 (50.28%), Postives = 119/179 (66.48%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T KY     D P H+DFVKNMITG SQA+ AVL++    G          QT+EH  L+ TLG+ Q+I   NKMD     Y + +++ +  EV++ +K VGY P  V F+P+S FEGDN+  +S N  WYKG TL++ALD++  P++P D PLR+P+QDVY I G+GTVPVGRVETGVL
Sbjct:   72 TDKYEFTIVDCPGHRDFVKNMITGASQADAAVLVVAVDDGVMP-------QTKEHVFLSRTLGINQLIVAINKMDLVN--YDEEKFNALKDEVAALIKTVGYKPSDVEFIPLSAFEGDNITSKSENTPWYKGKTLVEALDDLEAPEKPVDLPLRIPIQDVYSITGVGTVPVGRVETGVL 241          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_PYRKO (Elongation factor 1-alpha OS=Pyrococcus kodakaraensis GN=tuf PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.074e-45
Identity = 91/179 (50.84%), Postives = 121/179 (67.60%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T   Y    DAP H+DFVKNMITG SQA+ AVL++ +T G          QT+EHA LA TLG+  +I   NKMD     Y + ++ ++ ++V   L+ +GY  +  P +PIS +EGDN++++S  + WY GPTLL+ALD I EP +P DKPLR+P+QDVY I G+GTVPVGRVETGVL
Sbjct:   80 TPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATDGVMP-------QTKEHAFLARTLGINHIIVAINKMDMVN--YDEKKFKQVAEQVKKLLQMLGY--KDFPIIPISAWEGDNVVKKSDKMPWYNGPTLLEALDQIPEPPKPVDKPLRIPIQDVYSIKGVGTVPVGRVETGVL 247          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_THEGJ (Elongation factor 1-alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=tuf PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.709e-45
Identity = 92/179 (51.40%), Postives = 121/179 (67.60%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T   Y    DAP H+DFVKNMITG SQA+ AVL++ +T G          QT+EHA LA TLG+  +I   NKMD     Y +  ++++  +V   LK +GY  +  P +PIS +EGDN++++S  + WYKGPTL++ALD I EP +P DKPLR+P+QDVY I G+GTVPVGRVETGVL
Sbjct:   80 TPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATDGVMP-------QTKEHAFLARTLGINHIIVAINKMDMVN--YDQKVFEKVKAQVEKLLKMLGY--KDFPVIPISAWEGDNVVKKSDKMPWYKGPTLIEALDQIPEPPKPIDKPLRIPIQDVYSIKGVGTVPVGRVETGVL 247          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_NATPD (Elongation factor 1-alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=tuf PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.709e-45
Identity = 92/180 (51.11%), Postives = 121/180 (67.22%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLS 541
            T +YY    D P H+DFVKNMITG SQA+ AVL++ +  G          QT+EH  LA TLG+ ++I   NKMD     Y + +Y  +V EV+  L++V +N E   F+P S FEGDN+ E S N  WY GP+LL+AL+++ EP+ P+D PLRLP+QDVY I GIGTVPVGRVETG+L+
Sbjct:   82 TDEYYFTIVDCPGHRDFVKNMITGASQADNAVLVVAADDGV-------QPQTQEHVFLARTLGIDELIIAVNKMDLVD--YDENKYKAVVDEVNQLLEQVRFNTEDAKFIPTSAFEGDNVSEASENTSWYDGPSLLEALNDLPEPQPPTDAPLRLPIQDVYTISGIGTVPVGRVETGILN 252          
The following BLAST results are available for this feature:
BLAST of FC931613 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_METBF2.895e-4750.84Elongation factor 1-alpha OS=Methanosarcina barker... [more]
EF1A_METST8.422e-4750.28Elongation factor 1-alpha OS=Methanosphaera stadtm... [more]
EF1A_METS31.100e-4650.84Elongation factor 1-alpha OS=Methanobrevibacter sm... [more]
EF1A_METPE1.100e-4649.16Elongation factor 1-alpha OS=Methanosphaerula palu... [more]
EF1A_PYRWO7.129e-4651.40Elongation factor 1-alpha OS=Pyrococcus woesei GN=... [more]
EF1A_PYRFU7.129e-4651.40Elongation factor 1-alpha OS=Pyrococcus furiosus G... [more]
EF1A_METTH1.588e-4550.28Elongation factor 1-alpha OS=Methanobacterium ther... [more]
EF1A_PYRKO2.074e-4550.84Elongation factor 1-alpha OS=Pyrococcus kodakaraen... [more]
EF1A_THEGJ2.709e-4551.40Elongation factor 1-alpha OS=Thermococcus gammatol... [more]
EF1A_NATPD2.709e-4551.11Elongation factor 1-alpha OS=Natronomonas pharaoni... [more]

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Properties
Property NameValue
Genbank descriptionC34107B01EF PostHarvP1 Citrus clementina cDNA clone C34107B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931613 ID=FC931613; Name=FC931613; organism=Citrus clementina; type=EST; length=573bp
GACCACCAAGTACTACTGCGCCGGCTTTGATGCTCCCGAACATCAGGACT
TTGTCAAGAACATGATTACCGGTACCTCACAGGCTGAGTGTGCCGTCCTC
ATCATTGACTCCACCACCGGCAGTTTTGAAGCTGGTATCTCCAAGGATGG
TCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGA
TGATTTGCTGCTGTAACAAGATGGACGCCACCACCCCCAAGTATTCAAAG
GCTAGGTACGATGAAATTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGT
TGGATACAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGG
GTGACAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGTCCA
ACCCTGCTGGACGCTCTTGACAATATCAATGAGCCGAAGAGGCCCTCAGA
CAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCATTG
GAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAGCCTGGTATGG
TGGTGACGTTTGGCCCTCTGGAT
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