FC931613

Overview
NameFC931613
Unique NameFC931613
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length573
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A2_MOUSE (Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef1a2 PE=1 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 3.252e-71
Identity = 132/191 (69.11%), Postives = 153/191 (80.10%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            TTKYY    DAP H+DF+KNMITGTSQA+CAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RYDEIVKEVS+Y+KK+GYNP  VPFVPISG+ GDNM+E S N+ W+K            G +LL+ALD I  P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG+L
Sbjct:   82 TTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPAYSEKRYDEIVKEVSAYIKKIGYNPATVPFVPISGWHGDNMLEPSPNMPWFKGWKVERKEGNASGVSLLEALDTILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGIL 272          

HSP 2 Score: 22.7126 bits (47), Expect = 3.252e-71
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  538 QPGMVVTFGPLD 573
            +PGMVVTF P++
Sbjct:  273 RPGMVVTFAPVN 284          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A2_HUMAN (Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 3.252e-71
Identity = 132/191 (69.11%), Postives = 153/191 (80.10%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            TTKYY    DAP H+DF+KNMITGTSQA+CAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RYDEIVKEVS+Y+KK+GYNP  VPFVPISG+ GDNM+E S N+ W+K            G +LL+ALD I  P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG+L
Sbjct:   82 TTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPAYSEKRYDEIVKEVSAYIKKIGYNPATVPFVPISGWHGDNMLEPSPNMPWFKGWKVERKEGNASGVSLLEALDTILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGIL 272          

HSP 2 Score: 22.7126 bits (47), Expect = 3.252e-71
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  538 QPGMVVTFGPLD 573
            +PGMVVTF P++
Sbjct:  273 RPGMVVTFAPVN 284          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A2_BOVIN (Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A2 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 3.252e-71
Identity = 132/191 (69.11%), Postives = 153/191 (80.10%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            TTKYY    DAP H+DF+KNMITGTSQA+CAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RYDEIVKEVS+Y+KK+GYNP  VPFVPISG+ GDNM+E S N+ W+K            G +LL+ALD I  P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG+L
Sbjct:   82 TTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPAYSEKRYDEIVKEVSAYIKKIGYNPATVPFVPISGWHGDNMLEPSPNMPWFKGWKVERKEGNASGVSLLEALDTILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGIL 272          

HSP 2 Score: 22.7126 bits (47), Expect = 3.252e-71
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  538 QPGMVVTFGPLD 573
            +PGMVVTF P++
Sbjct:  273 RPGMVVTFAPVN 284          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_ONCVO (Elongation factor 1-alpha OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 4.903e-71
Identity = 128/191 (67.02%), Postives = 153/191 (80.10%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T KYY    DAP H+DF+KNMITGTSQA+CAVL++   TG FEAGISK+GQTREHALLA TLGVKQMI  CNKMD+T P +S+AR+ E+  EVS+Y+KK+GYNP+ +PFVPISGF GDNM+E S N+ W+K            G TLL+ALD++  P+RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG+L
Sbjct:   82 TPKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQMIVACNKMDSTDPPFSEARFGEVTTEVSNYIKKIGYNPKSIPFVPISGFNGDNMLEPSANMPWFKGWSVERKEGTMTGKTLLEALDSVVPPQRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGIL 272          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_ENTHI (Elongation factor 1-alpha OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 8.363e-71
Identity = 127/179 (70.95%), Postives = 152/179 (84.92%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T+KYY    DAP H+DF+KNMITGTSQA+ A+LI+ + TG FEAGISK+GQTREH LL++TLGVKQMI   NKMDA   +Y + RY+EI KE+S++LKK GYNP+K+PFVPISGF+GDNMIE STN+ WYKGPTL+ ALD++  P+RP DKPLRLPLQDVYKI GIGTVPVGRVETG+L
Sbjct:   82 TSKYYFTIIDAPGHRDFIKNMITGTSQADVAILIVAAGTGEFEAGISKNGQTREHILLSYTLGVKQMIVGVNKMDAI--QYKQERYEEIKKEISAFLKKTGYNPDKIPFVPISGFQGDNMIEPSTNMPWYKGPTLIGALDSVTPPERPVDKPLRLPLQDVYKISGIGTVPVGRVETGIL 258          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_PODCU (Elongation factor 1-alpha OS=Podospora curvicolla GN=TEF PE=3 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 1.427e-70
Identity = 131/191 (68.59%), Postives = 154/191 (80.63%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T KYY    DAP H+DF+KNMITGTSQA+CA+LII + TG FEAGISKDGQTREHALLA+TLGVKQ+I   NKMD T  K+S+AR++EI+KE S+++KKVGYNP+ V FVPISGF GDNM+E STN  WYK            G TLL+A+D+I  PKRP+DKPLRLPLQDVYKIGGIGTVPVGR+ETG+L
Sbjct:   83 TPKYYVTVIDAPGHRDFIKNMITGTSQADCAILIIAAGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAINKMDTT--KWSEARFNEIIKETSNFIKKVGYNPKTVAFVPISGFNGDNMLEASTNCPWYKGWEKEVKGGKATGKTLLEAIDSIEPPKRPTDKPLRLPLQDVYKIGGIGTVPVGRIETGIL 271          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_PODAN (Elongation factor 1-alpha OS=Podospora anserina GN=TEF PE=3 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 1.427e-70
Identity = 131/191 (68.59%), Postives = 154/191 (80.63%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T KYY    DAP H+DF+KNMITGTSQA+CA+LII + TG FEAGISKDGQTREHALLA+TLGVKQ+I   NKMD T  K+S+AR++EI+KE S+++KKVGYNP+ V FVPISGF GDNM+E STN  WYK            G TLL+A+D+I  PKRP+DKPLRLPLQDVYKIGGIGTVPVGR+ETG+L
Sbjct:   83 TPKYYVTVIDAPGHRDFIKNMITGTSQADCAILIIAAGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAINKMDTT--KWSEARFNEIIKETSNFIKKVGYNPKTVAFVPISGFNGDNMLEASTNCPWYKGWEKEVKGGKATGKTLLEAIDSIEPPKRPTDKPLRLPLQDVYKIGGIGTVPVGRIETGIL 271          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_DANRE (Elongation factor 1-alpha OS=Danio rerio GN=eef1a PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 1.427e-70
Identity = 132/191 (69.11%), Postives = 152/191 (79.58%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T+KYY    DAP H+DF+KNMITGTSQA+CAVLI+    G FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P YS+AR++EI KEVS+Y+KK+GYNP  V FVPISG+ GDNM+E S+N+ W+K            G TLLDALD I  P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETGVL
Sbjct:   82 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAGGVGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSQARFEEITKEVSAYIKKIGYNPASVAFVPISGWHGDNMLEASSNMGWFKGWKIERKEGNASGTTLLDALDAILPPSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 272          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A3_OSCTI (Elongation factor 1-alpha 3 OS=Oscheius tipulae GN=eft-3 PE=3 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 1.427e-70
Identity = 130/191 (68.06%), Postives = 152/191 (79.58%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T K+Y    DAP H+DF+KNMITGTSQA+CAVL++   TG FEAGISK+GQTREHALLA TLGVKQMI  CNKMD+T P +S+ R+DEIV EV S+LKKVGYNP  +PFVPISGF GDNM+E S+N+ WYK            G TL++ALD I  P+RP+D+PLRLPLQDVYKIGGIGTVPVGRVETGV+
Sbjct:   83 TAKFYVTIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQMIVACNKMDSTEPPFSEKRFDEIVTEVKSFLKKVGYNPATIPFVPISGFNGDNMLEPSSNMSWYKGWSVERKEGNASGKTLIEALDCIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGVI 273          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_CHICK (Elongation factor 1-alpha 1 OS=Gallus gallus GN=EEF1A PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 2.721e-70
Identity = 131/191 (68.59%), Postives = 154/191 (80.63%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T+KYY    DAP H+DF+KNMITGTSQA+CAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RY+EIVKEVS+Y+KK+GYNP+ V FVPISG+ GDNM+E S+N+ W+K            G TLL+ALD I  P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETGVL
Sbjct:   82 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSSNMPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 272          

HSP 2 Score: 22.7126 bits (47), Expect = 2.721e-70
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  538 QPGMVVTFGPLD 573
            +PGMVVTF P++
Sbjct:  273 KPGMVVTFAPVN 284          
The following BLAST results are available for this feature:
BLAST of FC931613 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A2_MOUSE3.252e-7169.11Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef... [more]
EF1A2_HUMAN3.252e-7169.11Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF... [more]
EF1A2_BOVIN3.252e-7169.11Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A... [more]
EF1A_ONCVO4.903e-7167.02Elongation factor 1-alpha OS=Onchocerca volvulus P... [more]
EF1A_ENTHI8.363e-7170.95Elongation factor 1-alpha OS=Entamoeba histolytica... [more]
EF1A_PODCU1.427e-7068.59Elongation factor 1-alpha OS=Podospora curvicolla ... [more]
EF1A_PODAN1.427e-7068.59Elongation factor 1-alpha OS=Podospora anserina GN... [more]
EF1A_DANRE1.427e-7069.11Elongation factor 1-alpha OS=Danio rerio GN=eef1a ... [more]
EF1A3_OSCTI1.427e-7068.06Elongation factor 1-alpha 3 OS=Oscheius tipulae GN... [more]
EF1A_CHICK2.721e-7068.59Elongation factor 1-alpha 1 OS=Gallus gallus GN=EE... [more]

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Properties
Property NameValue
Genbank descriptionC34107B01EF PostHarvP1 Citrus clementina cDNA clone C34107B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931613 ID=FC931613; Name=FC931613; organism=Citrus clementina; type=EST; length=573bp
GACCACCAAGTACTACTGCGCCGGCTTTGATGCTCCCGAACATCAGGACT
TTGTCAAGAACATGATTACCGGTACCTCACAGGCTGAGTGTGCCGTCCTC
ATCATTGACTCCACCACCGGCAGTTTTGAAGCTGGTATCTCCAAGGATGG
TCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGA
TGATTTGCTGCTGTAACAAGATGGACGCCACCACCCCCAAGTATTCAAAG
GCTAGGTACGATGAAATTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGT
TGGATACAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGG
GTGACAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGTCCA
ACCCTGCTGGACGCTCTTGACAATATCAATGAGCCGAAGAGGCCCTCAGA
CAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCATTG
GAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAGCCTGGTATGG
TGGTGACGTTTGGCCCTCTGGAT
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