FC931613

Overview
NameFC931613
Unique NameFC931613
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length573
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_HYDAT (Elongation factor 1-alpha OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 3.178e-70
Identity = 132/192 (68.75%), Postives = 153/192 (79.69%), Query Frame = 2 
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK-------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            TTKY     DAP H+DF+KNMITGTSQA+CAVLI+ S+TG FEAGISK+GQTREHALLAFTLGVKQMI   NK+D T P YS+AR++EI KE+S+Y+KKVGY+P+ VP +P+SG+ GDNMIE S N+ WYK             G TLL+ALDNI  P RPS KPLRLPLQDVYKIGGIGTVPVGRVETG+L
Sbjct:   83 TTKYVVTIIDAPGHRDFIKNMITGTSQADCAVLIVASSTGEFEAGISKNGQTREHALLAFTLGVKQMIVAVNKIDNTEPPYSEARFNEIKKEISAYVKKVGYDPKTVPVLPVSGWHGDNMIEPSPNMSWYKGWEVEYKDTGKHTGKTLLEALDNIPLPARPSSKPLRLPLQDVYKIGGIGTVPVGRVETGIL 274
[Close]
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A1_DROME (Elongation factor 1-alpha 1 OS=Drosophila melanogaster GN=Ef1alpha48D PE=1 SV=2)

HSP 1 Score: 264.233 bits (674), Expect = 3.178e-70
Identity = 133/191 (69.63%), Postives = 152/191 (79.58%), Query Frame = 2 
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T KYY    DAP H+DF+KNMITGTSQA+CAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD++ P YS+ARY+EI KEVSSY+KK+GYNP  V FVPISG+ GDNM+E STN+ W+K            G TL+DALD I  P RP+DK LRLPLQDVYKIGGIGTVPVGRVETGVL
Sbjct:   82 TAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSSEPPYSEARYEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTNMPWFKGWKVERKEGNADGKTLIDALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGVL 272
[Close]
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A3_HUMAN (Putative elongation factor 1-alpha-like 3 OS=Homo sapiens GN=EEF1AL3 PE=5 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 3.548e-70
Identity = 131/191 (68.59%), Postives = 153/191 (80.10%), Query Frame = 2 
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T+KYY    DAP H+DF+KNMITGTSQA+CAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RY+EIVKEVS+Y+KK+GYNP+ V FVPISG+ GDNM+E S N+ W+K            G TLL+ALD I  P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETGVL
Sbjct:   82 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 272

HSP 2 Score: 22.7126 bits (47), Expect = 3.548e-70
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:  538 QPGMVVTFGPLD 573
            +PGMVVTF P++
Sbjct:  273 KPGMVVTFAPVN 284
[Close]
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A1_RAT (Elongation factor 1-alpha 1 OS=Rattus norvegicus GN=Eef1a1 PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 3.548e-70
Identity = 131/191 (68.59%), Postives = 153/191 (80.10%), Query Frame = 2 
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T+KYY    DAP H+DF+KNMITGTSQA+CAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RY+EIVKEVS+Y+KK+GYNP+ V FVPISG+ GDNM+E S N+ W+K            G TLL+ALD I  P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETGVL
Sbjct:   82 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGSASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 272

HSP 2 Score: 22.7126 bits (47), Expect = 3.548e-70
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:  538 QPGMVVTFGPLD 573
            +PGMVVTF P++
Sbjct:  273 KPGMVVTFAPVN 284
[Close]
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A1_RABIT (Elongation factor 1-alpha 1 OS=Oryctolagus cuniculus GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 3.548e-70
Identity = 131/191 (68.59%), Postives = 153/191 (80.10%), Query Frame = 2 
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T+KYY    DAP H+DF+KNMITGTSQA+CAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RY+EIVKEVS+Y+KK+GYNP+ V FVPISG+ GDNM+E S N+ W+K            G TLL+ALD I  P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETGVL
Sbjct:   82 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 272

HSP 2 Score: 22.7126 bits (47), Expect = 3.548e-70
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:  538 QPGMVVTFGPLD 573
            +PGMVVTF P++
Sbjct:  273 KPGMVVTFAPVN 284
[Close]
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A1_PONAB (Elongation factor 1-alpha 1 OS=Pongo abelii GN=EEF1A1 PE=2 SV=2)

HSP 1 Score: 263.462 bits (672), Expect = 3.548e-70
Identity = 131/191 (68.59%), Postives = 153/191 (80.10%), Query Frame = 2 
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T+KYY    DAP H+DF+KNMITGTSQA+CAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RY+EIVKEVS+Y+KK+GYNP+ V FVPISG+ GDNM+E S N+ W+K            G TLL+ALD I  P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETGVL
Sbjct:   82 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 272

HSP 2 Score: 22.7126 bits (47), Expect = 3.548e-70
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:  538 QPGMVVTFGPLD 573
            +PGMVVTF P++
Sbjct:  273 KPGMVVTFAPVN 284
[Close]
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A1_PANTR (Elongation factor 1-alpha 1 OS=Pan troglodytes GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 3.548e-70
Identity = 131/191 (68.59%), Postives = 153/191 (80.10%), Query Frame = 2 
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T+KYY    DAP H+DF+KNMITGTSQA+CAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RY+EIVKEVS+Y+KK+GYNP+ V FVPISG+ GDNM+E S N+ W+K            G TLL+ALD I  P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETGVL
Sbjct:   82 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 272

HSP 2 Score: 22.7126 bits (47), Expect = 3.548e-70
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:  538 QPGMVVTFGPLD 573
            +PGMVVTF P++
Sbjct:  273 KPGMVVTFAPVN 284
[Close]
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A1_MOUSE (Elongation factor 1-alpha 1 OS=Mus musculus GN=Eef1a1 PE=1 SV=3)

HSP 1 Score: 263.462 bits (672), Expect = 3.548e-70
Identity = 131/191 (68.59%), Postives = 153/191 (80.10%), Query Frame = 2 
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T+KYY    DAP H+DF+KNMITGTSQA+CAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RY+EIVKEVS+Y+KK+GYNP+ V FVPISG+ GDNM+E S N+ W+K            G TLL+ALD I  P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETGVL
Sbjct:   82 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGSASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 272

HSP 2 Score: 22.7126 bits (47), Expect = 3.548e-70
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:  538 QPGMVVTFGPLD 573
            +PGMVVTF P++
Sbjct:  273 KPGMVVTFAPVN 284
[Close]
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A1_HUMAN (Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 3.548e-70
Identity = 131/191 (68.59%), Postives = 153/191 (80.10%), Query Frame = 2 
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T+KYY    DAP H+DF+KNMITGTSQA+CAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RY+EIVKEVS+Y+KK+GYNP+ V FVPISG+ GDNM+E S N+ W+K            G TLL+ALD I  P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETGVL
Sbjct:   82 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 272

HSP 2 Score: 22.7126 bits (47), Expect = 3.548e-70
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:  538 QPGMVVTFGPLD 573
            +PGMVVTF P++
Sbjct:  273 KPGMVVTFAPVN 284
[Close]
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A1_HORSE (Elongation factor 1-alpha 1 OS=Equus caballus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 3.548e-70
Identity = 131/191 (68.59%), Postives = 153/191 (80.10%), Query Frame = 2 
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T+KYY    DAP H+DF+KNMITGTSQA+CAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RY+EIVKEVS+Y+KK+GYNP+ V FVPISG+ GDNM+E S N+ W+K            G TLL+ALD I  P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETGVL
Sbjct:   82 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 272

HSP 2 Score: 22.7126 bits (47), Expect = 3.548e-70
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:  538 QPGMVVTFGPLD 573
            +PGMVVTF P++
Sbjct:  273 KPGMVVTFAPVN 284
The following BLAST results are available for this feature:
BLAST of FC931613 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_HYDAT3.178e-7068.75Elongation factor 1-alpha OS=Hydra attenuata PE=2 ... [more]
EF1A1_DROME3.178e-7069.63Elongation factor 1-alpha 1 OS=Drosophila melanoga... [more]
EF1A3_HUMAN3.548e-7068.59Putative elongation factor 1-alpha-like 3 OS=Homo ... [more]
EF1A1_RAT3.548e-7068.59Elongation factor 1-alpha 1 OS=Rattus norvegicus G... [more]
EF1A1_RABIT3.548e-7068.59Elongation factor 1-alpha 1 OS=Oryctolagus cunicul... [more]
EF1A1_PONAB3.548e-7068.59Elongation factor 1-alpha 1 OS=Pongo abelii GN=EEF... [more]
EF1A1_PANTR3.548e-7068.59Elongation factor 1-alpha 1 OS=Pan troglodytes GN=... [more]
EF1A1_MOUSE3.548e-7068.59Elongation factor 1-alpha 1 OS=Mus musculus GN=Eef... [more]
EF1A1_HUMAN3.548e-7068.59Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF... [more]
EF1A1_HORSE3.548e-7068.59Elongation factor 1-alpha 1 OS=Equus caballus GN=E... [more]

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Properties
Property NameValue
Genbank descriptionC34107B01EF PostHarvP1 Citrus clementina cDNA clone C34107B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931613 ID=FC931613; Name=FC931613; organism=Citrus clementina; type=EST; length=573bp
GACCACCAAGTACTACTGCGCCGGCTTTGATGCTCCCGAACATCAGGACT
TTGTCAAGAACATGATTACCGGTACCTCACAGGCTGAGTGTGCCGTCCTC
ATCATTGACTCCACCACCGGCAGTTTTGAAGCTGGTATCTCCAAGGATGG
TCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGA
TGATTTGCTGCTGTAACAAGATGGACGCCACCACCCCCAAGTATTCAAAG
GCTAGGTACGATGAAATTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGT
TGGATACAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGG
GTGACAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGTCCA
ACCCTGCTGGACGCTCTTGACAATATCAATGAGCCGAAGAGGCCCTCAGA
CAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCATTG
GAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAGCCTGGTATGG
TGGTGACGTTTGGCCCTCTGGAT
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