FC931767

Overview
NameFC931767
Unique NameFC931767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RICFE (30S ribosomal protein S16 OS=Rickettsia felis GN=rpsP PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.888e-17
Identity = 39/82 (47.56%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V+IRLAR G K +PFYRV+ A++ +PRDG  LE +G YNP+   D+ +R+ L  DR++YWL  GA+P++ V + + +AG+
Sbjct:    1 MAVKIRLARGGAKKRPFYRVVVANATAPRDGDFLEKVGTYNPMLASDNSERVVLKKDRIEYWLGTGAKPTERVAKFIEQAGV 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_LACLM (30S ribosomal protein S16 OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=rpsP PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.888e-17
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSR+PRDGK +E +G YNPL  ++   ++ L  +RV  WLS GAQPSD V+ +L +AG++
Sbjct:    1 MSVKIRLTRMGSKKKPFYRINVADSRAPRDGKFIETVGTYNPLVTEN---QVTLKEERVLEWLSNGAQPSDTVRNLLSKAGVM 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_EHRCJ (30S ribosomal protein S16 OS=Ehrlichia canis (strain Jake) GN=rpsP PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.888e-17
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPV 649
            M V+IRLARFG K +PFYRV+ ADSR  RDGK +E LG+YNP+  ++    + +  DR+KYWLSVGAQ +D V
Sbjct:    1 MSVKIRLARFGAKKRPFYRVVVADSRVSRDGKFIESLGFYNPMLPKEHELFVKVKVDRLKYWLSVGAQATDRV 73          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_CLOBB (30S ribosomal protein S16 OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=rpsP PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.888e-17
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V+IRL R GCK  PFYR++ ADSRSPRDG+ +E +GYYNP+      K   +N ++   WL  GAQP+D V+++  +AGL
Sbjct:    1 MAVKIRLRRMGCKKAPFYRIVVADSRSPRDGRFIEEIGYYNPITEPAEVK---INEEKASKWLQDGAQPTDVVKKLFTQAGL 79          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_CLOBA (30S ribosomal protein S16 OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=rpsP PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.888e-17
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V+IRL R GCK  PFYR++ ADSRSPRDG+ +E +GYYNP+      K   +N ++   WL  GAQP+D V+++  +AGL
Sbjct:    1 MAVKIRLRRMGCKKAPFYRIVVADSRSPRDGRFIEEIGYYNPITEPAEVK---INEEKASKWLQDGAQPTDVVKKLFTQAGL 79          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RT16_YEAST (37S ribosomal protein S16, mitochondrial OS=Saccharomyces cerevisiae GN=MRPS16 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.690e-17
Identity = 46/92 (50.00%), Postives = 60/92 (65.22%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLP----------GQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            +VRIRLARFG KN P Y ++ A+SR  RD K +EVLG Y P+P          G    K + L+FDR KYW+ VGAQPS+ V ++L +AG+L
Sbjct:    5 LVRIRLARFGRKNSPVYNIVVANSRKARDAKPIEVLGTYVPVPSPVTKRELKRGVVPIKDVKLDFDRTKYWIGVGAQPSETVTKLLRKAGIL 96          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RICPR (30S ribosomal protein S16 OS=Rickettsia prowazekii GN=rpsP PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.690e-17
Identity = 39/82 (47.56%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V+IRLAR G K +PFYRV+ A++ +PRDG  LE +G YNP+   D+ +R+ L  DR++YWL  GA+P++ V + + +AG+
Sbjct:    1 MAVKIRLARGGAKKRPFYRVVIANATAPRDGDFLEKVGTYNPMLASDNSERVILKKDRIEYWLGTGAKPTERVAKFIEKAGV 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_LACLS (30S ribosomal protein S16 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rpsP PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.690e-17
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSR+PRDGK +E +G YNPL  ++   ++ L  +RV  WLS GAQPSD V+ +L +AG++
Sbjct:    1 MSVKIRLTRMGSKKKPFYRINVADSRAPRDGKFIETVGTYNPLLTEN---QVTLKEERVLEWLSNGAQPSDTVRNLLSKAGVM 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_EHRCR (30S ribosomal protein S16 OS=Ehrlichia chaffeensis (strain Arkansas) GN=rpsP PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.690e-17
Identity = 41/73 (56.16%), Postives = 54/73 (73.97%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPV 649
            M V+IRLARFG K +PFYRV+ ADSR  RDGK +E LG+YNP+  ++    + +  DR+KYWLSVGAQ +D +
Sbjct:    1 MSVKIRLARFGAKKRPFYRVVVADSRVARDGKFIESLGFYNPMLPKEHELFVKVKVDRLKYWLSVGAQATDRI 73          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RT16_BOVIN (28S ribosomal protein S16, mitochondrial OS=Bos taurus GN=MRPS16 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.004e-16
Identity = 37/80 (46.25%), Postives = 55/80 (68.75%), Query Frame = 2
Query:  443 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLP 682
            IRLA  GC N+PFYR++AA ++ PRDG+ +E LG Y+P+P     K + LN DR+++W+  GA  S PV+++L  +G  P
Sbjct:   19 IRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPMPNSHGEKLVALNLDRIRHWIGCGAHLSKPVEKLLGLSGFFP 98          
The following BLAST results are available for this feature:
BLAST of FC931767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_RICFE5.888e-1747.5630S ribosomal protein S16 OS=Rickettsia felis GN=r... [more]
RS16_LACLM5.888e-1753.0130S ribosomal protein S16 OS=Lactococcus lactis su... [more]
RS16_EHRCJ5.888e-1757.5330S ribosomal protein S16 OS=Ehrlichia canis (stra... [more]
RS16_CLOBB5.888e-1750.0030S ribosomal protein S16 OS=Clostridium botulinum... [more]
RS16_CLOBA5.888e-1750.0030S ribosomal protein S16 OS=Clostridium botulinum... [more]
RT16_YEAST7.690e-1750.0037S ribosomal protein S16, mitochondrial OS=Saccha... [more]
RS16_RICPR7.690e-1747.5630S ribosomal protein S16 OS=Rickettsia prowazekii... [more]
RS16_LACLS7.690e-1753.0130S ribosomal protein S16 OS=Lactococcus lactis su... [more]
RS16_EHRCR7.690e-1756.1630S ribosomal protein S16 OS=Ehrlichia chaffeensis... [more]
RT16_BOVIN1.004e-1646.2528S ribosomal protein S16, mitochondrial OS=Bos ta... [more]

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Properties
Property NameValue
Genbank descriptionC34201A03EF PostHarveN Citrus clementina cDNA clone C34201A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931767 ID=FC931767; Name=FC931767; organism=Citrus clementina; type=EST; length=692bp
AACAAATCAAACAAACCCTGAAGCAGAAAGCCTGGAACTATCTTGCGGTT
TCTCCTCTCTGCCCACTGAAGACAGAAGGTGCCGGTGCCGGCTGCCGCTA
AAAATACCCACGCCACGACACAGCTGCGCCACGTTCTAGCCGCTGATAGC
CTCACGCGTCACCACGACAGGCACGAGCCGCCGACAGCCTCTGAGCCTCA
GCCCAAAACAGTCGCAGTTCTGCCGACGGCCTCACCACACGTCAGCCTCA
TCTCTCCTCTCTCAAATCAGCGTCAGTCCACAACAACCGTACCACAGCAG
CCTCAATCGACTACAGAAACCCACGACCGCAGCTCACGGCAGCAGGCCAG
CAGCCCACGAGTCCACGACAACAACCTCAGCGAACCAGCCTCAGCAAAAA
AAGCGCAGAGGGTATCCAGGAAAAGAAAAGATGGTGGTGAGGATTCGATT
GGCGAGATTCGGATGTAAGAACAAACCTTTCTATCGGGTGATGGCTGCTG
ATAGCCGATCACCCAGAGATGGTAAGCATCTTGAAGTCTTGGGCTATTAC
AACCCCTTGCCAGGTCAAGACAGCGGCAAAAGAATGGGTCTGAATTTTGA
TAGAGTGAAGTATTGGCTATCAGTTGGTGCTCAACCATCGGACCCTGTCC
AGCGCATTCTTTTCAGGGCAGGGTTGCTACCCCACCTCCTAT
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