FC931767
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_ROSDO (30S ribosomal protein S16 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rpsP PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.336e-20 Identity = 47/82 (57.32%), Postives = 63/82 (76.83%), Query Frame = 2 Query: 431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676 M ++IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL +DS +R+ ++ +RV+YWL GAQP+D V R+L AGL Sbjct: 1 MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDAERVQYWLGQGAQPTDRVARMLEAAGL 82
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_SPHWW (30S ribosomal protein S16 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rpsP PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.357e-20 Identity = 47/82 (57.32%), Postives = 60/82 (73.17%), Query Frame = 2 Query: 431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676 M V IRLAR G K +P+YR++ AD+RSPRDG +E +G YNPL +D KR+ L+ DR K+WLSVGAQP+D V R L AG+ Sbjct: 1 MAVSIRLARGGAKKRPYYRIVVADARSPRDGAFIEKIGAYNPLLAKDDPKRVVLDTDRAKHWLSVGAQPTDRVARFLDAAGV 82
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_DINSH (30S ribosomal protein S16 OS=Dinoroseobacter shibae (strain DFL 12) GN=rpsP PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 9.705e-20 Identity = 46/84 (54.76%), Postives = 63/84 (75.00%), Query Frame = 2 Query: 431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLP 682 M ++IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL +DS R+ ++ +RV+YWL GA+P+D V R+L A +LP Sbjct: 1 MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEDRVKMDLERVQYWLGEGAKPTDRVARMLEAAEVLP 84
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_SILPO (30S ribosomal protein S16 OS=Silicibacter pomeroyi GN=rpsP PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19 Identity = 46/83 (55.42%), Postives = 64/83 (77.11%), Query Frame = 2 Query: 431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679 M ++IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL +DS +R+ ++ +RV+YWLS GAQ +D V R+L AG++ Sbjct: 1 MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDVERVQYWLSQGAQTTDRVARMLEAAGVV 83
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RHOS5 (30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rpsP PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19 Identity = 47/82 (57.32%), Postives = 60/82 (73.17%), Query Frame = 2 Query: 431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676 M ++IRLAR G K +P Y ++A+DSR PRDG+ LE LG YNPL +DS R+ +N +RV+YWLS GAQP+D V R L AGL Sbjct: 1 MAMKIRLARGGSKKRPHYSIVASDSRMPRDGRFLEKLGTYNPLLAKDSEDRIKMNVERVQYWLSQGAQPTDRVARFLEAAGL 82
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RHOS4 (30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rpsP PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.162e-19 Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 2 Query: 431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676 M ++IRLAR G K +P Y ++A+DSR PRDG+ LE LG YNPL +DS R+ +N +RV+YWL+ GAQP+D V R L AGL Sbjct: 1 MAMKIRLARGGSKKRPHYSIVASDSRMPRDGRFLEKLGTYNPLLAKDSEDRIKMNLERVQYWLAQGAQPTDRVARFLEAAGL 82
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RHOS1 (30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rpsP PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.162e-19 Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 2 Query: 431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676 M ++IRLAR G K +P Y ++A+DSR PRDG+ LE LG YNPL +DS R+ +N +RV+YWL+ GAQP+D V R L AGL Sbjct: 1 MAMKIRLARGGSKKRPHYSIVASDSRMPRDGRFLEKLGTYNPLLAKDSEDRIKMNLERVQYWLAQGAQPTDRVARFLEAAGL 82
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RHOPS (30S ribosomal protein S16 OS=Rhodopseudomonas palustris (strain BisB5) GN=rpsP PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.688e-19 Identity = 47/82 (57.32%), Postives = 59/82 (71.95%), Query Frame = 2 Query: 431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676 M V IRLAR G K +PFY V+ ADSR PRDG+ +E LGY+NPL +D+ R+ L+ D+VK WL+ GAQPSD V R L AG+ Sbjct: 1 MSVVIRLARAGTKKRPFYHVVVADSRFPRDGRFIERLGYFNPLMAKDNEARLKLDLDKVKDWLAKGAQPSDRVARFLDTAGI 82
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RHIME (30S ribosomal protein S16 OS=Rhizobium meliloti GN=rpsP PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.688e-19 Identity = 43/82 (52.44%), Postives = 63/82 (76.83%), Query Frame = 2 Query: 431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676 M ++IRLAR G K +P+Y+++ AD+RSPRDG+ LE LG +NP+ +D KR+ LN +RV++W++ GAQP+D V R L +AGL Sbjct: 1 MALKIRLARGGSKKRPYYQIVVADARSPRDGRFLEKLGSWNPMLAKDDEKRIELNAERVQHWIAQGAQPTDRVMRFLDQAGL 82
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RHOPT (30S ribosomal protein S16 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rpsP PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19 Identity = 47/82 (57.32%), Postives = 59/82 (71.95%), Query Frame = 2 Query: 431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676 M V IRLAR G K +PFY V+ ADSR PRDG+ +E LGY+NPL +D+ R+ L+ D+VK WL+ GAQPSD V R L AG+ Sbjct: 1 MSVVIRLARAGTKKRPFYHVVVADSRFPRDGRFIERLGYFNPLMAKDNEARLKLDLDKVKDWLAKGAQPSDRVARFLDTAGV 82 The following BLAST results are available for this feature:
BLAST of FC931767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931767 ID=FC931767; Name=FC931767; organism=Citrus clementina; type=EST; length=692bpback to top |