FC931767

Overview
NameFC931767
Unique NameFC931767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_PELUB (30S ribosomal protein S16 OS=Pelagibacter ubique GN=rpsP PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.004e-16
Identity = 39/82 (47.56%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            +++IRL+R G K +P Y+V+ ADSR  RDG+ +E +G++NPL  +D  +R+GL  +R+KYWL  GAQP+  V RIL   G++
Sbjct:    1 MIKIRLSRGGTKKRPVYKVVIADSRRARDGRFIEKVGFFNPLLPKDKKERVGLEAERIKYWLGQGAQPTTRVARILGENGII 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_LACAC (30S ribosomal protein S16 OS=Lactobacillus acidophilus GN=rpsP PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.004e-16
Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPHL 688
            M V+IR+ R G K KPFYR++ ADSR PRDG+ +E +GYYNP+      K + L+ D++  WL  GAQPSD V+ +L  AGL+  L
Sbjct:    1 MSVKIRMHRAGAKRKPFYRIVVADSRMPRDGRFIEQVGYYNPV---SQPKELKLDEDKIFEWLQKGAQPSDTVRSLLSGAGLMAKL 83          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_GLUOX (30S ribosomal protein S16 OS=Gluconobacter oxydans GN=rpsP PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.004e-16
Identity = 42/84 (50.00%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLP 682
            M ++IRLAR G K +P+Y ++ ADSRSPRDG+ +E +G YNP+   D   R+ L  +R+K+WLS GA  +D V R L  AGL P
Sbjct:    1 MSLKIRLARAGAKKRPYYHIVVADSRSPRDGRFIEKVGSYNPMLPADHADRIRLVDERIKHWLSNGALATDRVARFLGNAGLAP 84          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BLOFL (30S ribosomal protein S16 OS=Blochmannia floridanus GN=rpsP PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.004e-16
Identity = 41/72 (56.94%), Postives = 54/72 (75.00%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPV 649
            +VRIRLAR GCK  PFY ++  DSR+ RDG+ +E +G++NP+   D  KR+ +N DRV+YWLS GAQPSD V
Sbjct:    1 MVRIRLARGGCKKSPFYYIVVTDSRNSRDGRFIERIGFFNPVE-LDIKKRLRVNLDRVRYWLSNGAQPSDRV 71          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_AGRT5 (30S ribosomal protein S16 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rpsP PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.004e-16
Identity = 40/82 (48.78%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M ++IRLAR G K +P+Y+++ AD+RSPRDG+ LE +G +NP+  +D+  R+ L  D +K W++ GAQP+D V R L  AGL
Sbjct:    1 MALKIRLARGGSKKRPYYQIVVADARSPRDGRFLEKVGSWNPMLAKDNPLRVELKADLIKEWIAKGAQPTDRVLRFLAEAGL 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RT16_MOUSE (28S ribosomal protein S16, mitochondrial OS=Mus musculus GN=Mrps16 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 37/80 (46.25%), Postives = 55/80 (68.75%), Query Frame = 2
Query:  443 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLP 682
            IRLA  GC N+PFYR++AA ++ PRDG+ +E LG Y+PLP     K + LN DR+++W+  GA  S P++++L  +G  P
Sbjct:   19 IRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCGAHLSKPMEKLLGLSGFFP 98          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRTD (30S ribosomal protein S16 OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rpsP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ L  +RV  WLS GAQPSD V+ IL + G++
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVEEN---QVTLKEERVLEWLSKGAQPSDTVRNILSKEGVM 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRT2 (30S ribosomal protein S16 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rpsP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ L  +RV  WLS GAQPSD V+ IL + G++
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVEEN---QVTLKEERVLEWLSKGAQPSDTVRNILSKEGVM 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRT1 (30S ribosomal protein S16 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rpsP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ L  +RV  WLS GAQPSD V+ IL + G++
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVEEN---QVTLKEERVLEWLSKGAQPSDTVRNILSKEGVM 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_ROSS1 (30S ribosomal protein S16 OS=Roseiflexus sp. (strain RS-1) GN=rpsP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 42/82 (51.22%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            +V IRL R G   +P YR++ ADSR+PRDGK +E++G+YNP+      K + +  DRV+YWLSVGAQPS+ V R+L + G+L
Sbjct:    1 MVTIRLRRMGKTKQPSYRLVVADSRAPRDGKFIEIVGHYNPV---RQPKELHVKADRVRYWLSVGAQPSETVVRLLKQVGVL 79          
The following BLAST results are available for this feature:
BLAST of FC931767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_PELUB1.004e-1647.5630S ribosomal protein S16 OS=Pelagibacter ubique G... [more]
RS16_LACAC1.004e-1650.0030S ribosomal protein S16 OS=Lactobacillus acidoph... [more]
RS16_GLUOX1.004e-1650.0030S ribosomal protein S16 OS=Gluconobacter oxydans... [more]
RS16_BLOFL1.004e-1656.9430S ribosomal protein S16 OS=Blochmannia floridanu... [more]
RS16_AGRT51.004e-1648.7830S ribosomal protein S16 OS=Agrobacterium tumefac... [more]
RT16_MOUSE1.312e-1646.2528S ribosomal protein S16, mitochondrial OS=Mus mu... [more]
RS16_STRTD1.312e-1651.8130S ribosomal protein S16 OS=Streptococcus thermop... [more]
RS16_STRT21.312e-1651.8130S ribosomal protein S16 OS=Streptococcus thermop... [more]
RS16_STRT11.312e-1651.8130S ribosomal protein S16 OS=Streptococcus thermop... [more]
RS16_ROSS11.312e-1651.2230S ribosomal protein S16 OS=Roseiflexus sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionC34201A03EF PostHarveN Citrus clementina cDNA clone C34201A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931767 ID=FC931767; Name=FC931767; organism=Citrus clementina; type=EST; length=692bp
AACAAATCAAACAAACCCTGAAGCAGAAAGCCTGGAACTATCTTGCGGTT
TCTCCTCTCTGCCCACTGAAGACAGAAGGTGCCGGTGCCGGCTGCCGCTA
AAAATACCCACGCCACGACACAGCTGCGCCACGTTCTAGCCGCTGATAGC
CTCACGCGTCACCACGACAGGCACGAGCCGCCGACAGCCTCTGAGCCTCA
GCCCAAAACAGTCGCAGTTCTGCCGACGGCCTCACCACACGTCAGCCTCA
TCTCTCCTCTCTCAAATCAGCGTCAGTCCACAACAACCGTACCACAGCAG
CCTCAATCGACTACAGAAACCCACGACCGCAGCTCACGGCAGCAGGCCAG
CAGCCCACGAGTCCACGACAACAACCTCAGCGAACCAGCCTCAGCAAAAA
AAGCGCAGAGGGTATCCAGGAAAAGAAAAGATGGTGGTGAGGATTCGATT
GGCGAGATTCGGATGTAAGAACAAACCTTTCTATCGGGTGATGGCTGCTG
ATAGCCGATCACCCAGAGATGGTAAGCATCTTGAAGTCTTGGGCTATTAC
AACCCCTTGCCAGGTCAAGACAGCGGCAAAAGAATGGGTCTGAATTTTGA
TAGAGTGAAGTATTGGCTATCAGTTGGTGCTCAACCATCGGACCCTGTCC
AGCGCATTCTTTTCAGGGCAGGGTTGCTACCCCACCTCCTAT
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