FC931767

Overview
NameFC931767
Unique NameFC931767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_METS4 (30S ribosomal protein S16 OS=Methylobacterium sp. (strain 4-46) GN=rpsP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 39/82 (47.56%), Postives = 58/82 (70.73%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M ++IRL R G K +P+YR++ ADSRSPRDG+ +E +G Y+P+  +D   R+ L  ++++ WL+ GAQP+D V R L  AGL
Sbjct:    1 MSLKIRLTRGGAKKRPYYRIVVADSRSPRDGRFIEKVGVYDPMKPKDDPARVSLESEKIQAWLAKGAQPTDRVLRFLDAAGL 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_LACH4 (30S ribosomal protein S16 OS=Lactobacillus helveticus (strain DPC 4571) GN=rpsP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPHL 688
            M V+IR+ R G K KPFYR++ ADSR PRDG+ +E +GYYNP+      K + L+ D++  WL  GAQPSD V+ +L  AGL+  L
Sbjct:    1 MSVKIRMHRAGAKRKPFYRIVVADSRMPRDGRFIEQVGYYNPV---SQPKELKLDEDKIFDWLQKGAQPSDTVRSLLSGAGLMTKL 83          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_LACCB (30S ribosomal protein S16 OS=Lactobacillus casei (strain BL23) GN=rpsP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 43/83 (51.81%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR++ ADSRSPRDG+ +E +GYYNPL      K   LN + +  WL  GAQPSD V+ +L   G++
Sbjct:    1 MAVKIRLKRMGSKRKPFYRIVVADSRSPRDGRFIEAVGYYNPLTNPVDLK---LNEEDILNWLQKGAQPSDTVRNLLGSKGIM 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_LACC3 (30S ribosomal protein S16 OS=Lactobacillus casei (strain ATCC 334) GN=rpsP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 43/83 (51.81%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR++ ADSRSPRDG+ +E +GYYNPL      K   LN + +  WL  GAQPSD V+ +L   G++
Sbjct:    1 MAVKIRLKRMGSKRKPFYRIVVADSRSPRDGRFIEAVGYYNPLTNPVDLK---LNEEDILNWLQKGAQPSDTVRNLLGSKGIM 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_COPPD (30S ribosomal protein S16 OS=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) GN=rpsP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 41/83 (49.40%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V++RL R G K +P YRV+ AD RSPRDG+ +E++G+YNP   +   + + L  DRVKYWLSVG +P+D V+ +L +A +L
Sbjct:    1 MAVKMRLLRVGAKGQPSYRVVVADERSPRDGRFIEIVGFYNP---RTEPETIQLKEDRVKYWLSVGVKPTDSVRILLRKANML 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RICRS (30S ribosomal protein S16 OS=Rickettsia rickettsii (strain Sheila Smith) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.237e-16
Identity = 38/82 (46.34%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V+IRLAR G K +PFYRV+ A++ +PRDG  LE +G Y+P+   D+ +R+ L  DR++YWL  GA+P++ V + + +AG+
Sbjct:    1 MAVKIRLARGGAKKRPFYRVVVANATAPRDGDFLEKVGTYDPMLASDNSERVVLKKDRIEYWLGTGAKPTERVAKFIEQAGV 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RICRO (30S ribosomal protein S16 OS=Rickettsia rickettsii (strain Iowa) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.237e-16
Identity = 38/82 (46.34%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V+IRLAR G K +PFYRV+ A++ +PRDG  LE +G Y+P+   D+ +R+ L  DR++YWL  GA+P++ V + + +AG+
Sbjct:    1 MAVKIRLARGGAKKRPFYRVVVANATAPRDGDFLEKVGTYDPMLASDNSERVVLKKDRIEYWLGTGAKPTERVAKFIEQAGV 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RICPU (30S ribosomal protein S16 OS=Rickettsia peacockii (strain Rustic) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.237e-16
Identity = 38/82 (46.34%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V+IRLAR G K +PFYRV+ A++ +PRDG  LE +G Y+P+   D+ +R+ L  DR++YWL  GA+P++ V + + +AG+
Sbjct:    1 MAVKIRLARGGAKKRPFYRVVVANATAPRDGDFLEKVGTYDPMLASDNSERVVLKKDRIEYWLGTGAKPTERVAKFIEQAGV 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RICCN (30S ribosomal protein S16 OS=Rickettsia conorii GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.237e-16
Identity = 38/82 (46.34%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V+IRLAR G K +PFYRV+ A++ +PRDG  LE +G Y+P+   D+ +R+ L  DR++YWL  GA+P++ V + + +AG+
Sbjct:    1 MAVKIRLARGGAKKRPFYRVVVANATAPRDGDFLEKVGTYDPMLASDNSERVVLKKDRIEYWLGTGAKPTERVAKFIEQAGV 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RICAE (30S ribosomal protein S16 OS=Rickettsia africae (strain ESF-5) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.237e-16
Identity = 38/82 (46.34%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V+IRLAR G K +PFYRV+ A++ +PRDG  LE +G Y+P+   D+ +R+ L  DR++YWL  GA+P++ V + + +AG+
Sbjct:    1 MAVKIRLARGGAKKRPFYRVVVANATAPRDGDFLEKVGTYDPMLASDNSERVVLKKDRIEYWLGTGAKPTERVAKFIEQAGV 82          
The following BLAST results are available for this feature:
BLAST of FC931767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_METS41.312e-1647.5630S ribosomal protein S16 OS=Methylobacterium sp. ... [more]
RS16_LACH41.312e-1650.0030S ribosomal protein S16 OS=Lactobacillus helveti... [more]
RS16_LACCB1.312e-1651.8130S ribosomal protein S16 OS=Lactobacillus casei (... [more]
RS16_LACC31.312e-1651.8130S ribosomal protein S16 OS=Lactobacillus casei (... [more]
RS16_COPPD1.312e-1649.4030S ribosomal protein S16 OS=Coprothermobacter pro... [more]
RS16_RICRS2.237e-1646.3430S ribosomal protein S16 OS=Rickettsia rickettsii... [more]
RS16_RICRO2.237e-1646.3430S ribosomal protein S16 OS=Rickettsia rickettsii... [more]
RS16_RICPU2.237e-1646.3430S ribosomal protein S16 OS=Rickettsia peacockii ... [more]
RS16_RICCN2.237e-1646.3430S ribosomal protein S16 OS=Rickettsia conorii GN... [more]
RS16_RICAE2.237e-1646.3430S ribosomal protein S16 OS=Rickettsia africae (s... [more]

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Properties
Property NameValue
Genbank descriptionC34201A03EF PostHarveN Citrus clementina cDNA clone C34201A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931767 ID=FC931767; Name=FC931767; organism=Citrus clementina; type=EST; length=692bp
AACAAATCAAACAAACCCTGAAGCAGAAAGCCTGGAACTATCTTGCGGTT
TCTCCTCTCTGCCCACTGAAGACAGAAGGTGCCGGTGCCGGCTGCCGCTA
AAAATACCCACGCCACGACACAGCTGCGCCACGTTCTAGCCGCTGATAGC
CTCACGCGTCACCACGACAGGCACGAGCCGCCGACAGCCTCTGAGCCTCA
GCCCAAAACAGTCGCAGTTCTGCCGACGGCCTCACCACACGTCAGCCTCA
TCTCTCCTCTCTCAAATCAGCGTCAGTCCACAACAACCGTACCACAGCAG
CCTCAATCGACTACAGAAACCCACGACCGCAGCTCACGGCAGCAGGCCAG
CAGCCCACGAGTCCACGACAACAACCTCAGCGAACCAGCCTCAGCAAAAA
AAGCGCAGAGGGTATCCAGGAAAAGAAAAGATGGTGGTGAGGATTCGATT
GGCGAGATTCGGATGTAAGAACAAACCTTTCTATCGGGTGATGGCTGCTG
ATAGCCGATCACCCAGAGATGGTAAGCATCTTGAAGTCTTGGGCTATTAC
AACCCCTTGCCAGGTCAAGACAGCGGCAAAAGAATGGGTCTGAATTTTGA
TAGAGTGAAGTATTGGCTATCAGTTGGTGCTCAACCATCGGACCCTGTCC
AGCGCATTCTTTTCAGGGCAGGGTTGCTACCCCACCTCCTAT
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