FC931767

Overview
NameFC931767
Unique NameFC931767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15503 contig Ccv1_Contig15503:27..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_GEMAT (30S ribosomal protein S16 OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.237e-16
Identity = 41/83 (49.40%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K  P YR++ ADS++PRDG+ +E+LG Y P  G+++   + L  DRV +WL+VGA P+D V+ +L RAG+L
Sbjct:    1 MAVKIRLRREGRKKTPMYRIVVADSKAPRDGRFIEILGQYQPRGGENA---IALKADRVNHWLNVGALPTDTVRSLLRRAGIL 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_CLOD6 (30S ribosomal protein S16 OS=Clostridium difficile (strain 630) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.237e-16
Identity = 38/83 (45.78%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G   KPFYR++ ADSR+PRDGK +E +GYYNP+      K++ +N ++   WL+ GAQP++ V+++L + G++
Sbjct:    1 MAVKIRLKRMGANKKPFYRIVVADSRAPRDGKFIEEIGYYNPI---SEPKQVRINDEKAIKWLATGAQPTEVVKKLLVKNGVI 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_CHLTE (30S ribosomal protein S16 OS=Chlorobium tepidum GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.237e-16
Identity = 43/82 (52.44%), Postives = 57/82 (69.51%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            +V+IRL R G K  PFY+++AAD R+PRDGK LEVLG+YNP     +   + +  DRV YWL+VGAQP+D V  ++   GLL
Sbjct:    1 MVKIRLKRAGRKKMPFYQIVAADGRAPRDGKFLEVLGHYNPTAKPHT---VTIEKDRVAYWLNVGAQPTDTVHSLIRGTGLL 79          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_THERP (30S ribosomal protein S16 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 38/83 (45.78%), Postives = 60/83 (72.29%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLP 682
            ++++RL R G K +P YR++AA++R PRDG+ +EV+GYYNP   +     + +N +R ++WL  GAQP+D V+ +L RAG+LP
Sbjct:    1 MIKLRLRRMGKKRQPHYRIVAAEARWPRDGRFIEVIGYYNP---RTDPYTLEVNVERARWWLEHGAQPTDTVRALLVRAGVLP 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_ROSCS (30S ribosomal protein S16 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 41/82 (50.00%), Postives = 58/82 (70.73%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            +V IRL R G   KP YR++ ADSR+PRDG+ +E++G+YNP+      K + +  DRV+YWL VGAQPS+ V R+L + G+L
Sbjct:    1 MVTIRLRRTGKTKKPSYRLVVADSRAPRDGRFIEIVGHYNPV---RQPKELNVKADRVRYWLGVGAQPSETVVRLLKQVGVL 79          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_OCHA4 (30S ribosomal protein S16 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 39/82 (47.56%), Postives = 62/82 (75.61%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M ++IRLAR G K +P+Y ++ AD RSPRDG+ +E +G +NP+  +D+ +R+ L+ DR+++W++ GAQP+D V R L +AGL
Sbjct:    1 MSLKIRLARAGSKKRPYYHIVVADVRSPRDGRFIETVGAWNPMLAKDA-ERVKLDADRIQHWIAQGAQPTDRVLRFLDQAGL 81          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_METNO (30S ribosomal protein S16 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 38/82 (46.34%), Postives = 58/82 (70.73%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M ++IRL R G K +P+YR++ ADSRSPRDG+ ++ +G Y+P+  +D   R+ L  ++++ WL+ GAQP+D V R L  AGL
Sbjct:    1 MSLKIRLTRGGAKKRPYYRIVVADSRSPRDGRFIDKVGVYDPMKPKDDPARVSLEAEKIQAWLAKGAQPTDRVLRFLDAAGL 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_CLOBM (30S ribosomal protein S16 OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 40/82 (48.78%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V+IRL R G K  PFYRV+ ADSRSPRDG+ +E +GYYNP+    + K   L+ ++V+ W+  GAQP+D V++++ +AG+
Sbjct:    1 MAVKIRLKRMGAKKAPFYRVVVADSRSPRDGRFVEEIGYYNPITEPSTIK---LDEEKVQKWIKNGAQPTDTVKKLIEKAGI 79          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_CLOBL (30S ribosomal protein S16 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 40/82 (48.78%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V+IRL R G K  PFYRV+ ADSRSPRDG+ +E +GYYNP+    + K   L+ ++V+ W+  GAQP+D V++++ +AG+
Sbjct:    1 MAVKIRLKRMGAKKAPFYRVVVADSRSPRDGRFVEEIGYYNPITEPSTIK---LDEEKVQKWIKNGAQPTDTVKKLIEKAGI 79          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_CLOBK (30S ribosomal protein S16 OS=Clostridium botulinum (strain Okra / Type B1) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 40/82 (48.78%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V+IRL R G K  PFYRV+ ADSRSPRDG+ +E +GYYNP+    + K   L+ ++V+ W+  GAQP+D V++++ +AG+
Sbjct:    1 MAVKIRLKRMGAKKAPFYRVVVADSRSPRDGRFVEEIGYYNPITEPSTIK---LDEEKVQKWIKNGAQPTDTVKKLIEKAGI 79          
The following BLAST results are available for this feature:
BLAST of FC931767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_GEMAT2.237e-1649.4030S ribosomal protein S16 OS=Gemmatimonas aurantia... [more]
RS16_CLOD62.237e-1645.7830S ribosomal protein S16 OS=Clostridium difficile... [more]
RS16_CHLTE2.237e-1652.4430S ribosomal protein S16 OS=Chlorobium tepidum GN... [more]
RS16_THERP2.922e-1645.7830S ribosomal protein S16 OS=Thermomicrobium roseu... [more]
RS16_ROSCS2.922e-1650.0030S ribosomal protein S16 OS=Roseiflexus castenhol... [more]
RS16_OCHA42.922e-1647.5630S ribosomal protein S16 OS=Ochrobactrum anthropi... [more]
RS16_METNO2.922e-1646.3430S ribosomal protein S16 OS=Methylobacterium nodu... [more]
RS16_CLOBM2.922e-1648.7830S ribosomal protein S16 OS=Clostridium botulinum... [more]
RS16_CLOBL2.922e-1648.7830S ribosomal protein S16 OS=Clostridium botulinum... [more]
RS16_CLOBK2.922e-1648.7830S ribosomal protein S16 OS=Clostridium botulinum... [more]

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Properties
Property NameValue
Genbank descriptionC34201A03EF PostHarveN Citrus clementina cDNA clone C34201A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931767 ID=FC931767; Name=FC931767; organism=Citrus clementina; type=EST; length=692bp
AACAAATCAAACAAACCCTGAAGCAGAAAGCCTGGAACTATCTTGCGGTT
TCTCCTCTCTGCCCACTGAAGACAGAAGGTGCCGGTGCCGGCTGCCGCTA
AAAATACCCACGCCACGACACAGCTGCGCCACGTTCTAGCCGCTGATAGC
CTCACGCGTCACCACGACAGGCACGAGCCGCCGACAGCCTCTGAGCCTCA
GCCCAAAACAGTCGCAGTTCTGCCGACGGCCTCACCACACGTCAGCCTCA
TCTCTCCTCTCTCAAATCAGCGTCAGTCCACAACAACCGTACCACAGCAG
CCTCAATCGACTACAGAAACCCACGACCGCAGCTCACGGCAGCAGGCCAG
CAGCCCACGAGTCCACGACAACAACCTCAGCGAACCAGCCTCAGCAAAAA
AAGCGCAGAGGGTATCCAGGAAAAGAAAAGATGGTGGTGAGGATTCGATT
GGCGAGATTCGGATGTAAGAACAAACCTTTCTATCGGGTGATGGCTGCTG
ATAGCCGATCACCCAGAGATGGTAAGCATCTTGAAGTCTTGGGCTATTAC
AACCCCTTGCCAGGTCAAGACAGCGGCAAAAGAATGGGTCTGAATTTTGA
TAGAGTGAAGTATTGGCTATCAGTTGGTGCTCAACCATCGGACCCTGTCC
AGCGCATTCTTTTCAGGGCAGGGTTGCTACCCCACCTCCTAT
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