FC931767
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_THET2 (30S ribosomal protein S16 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rpsP PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16 Identity = 38/81 (46.91%), Postives = 60/81 (74.07%), Query Frame = 2 Query: 434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676 +V+IRLARFG K+ P YR++ D+R RDGK++E +GYY+ P + + + ++ +R +YWLSVGAQP+D +R+L +AG+ Sbjct: 1 MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYD--PRKTTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAGV 79
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_NEOSM (30S ribosomal protein S16 OS=Neorickettsia sennetsu (strain Miyayama) GN=rpsP PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16 Identity = 36/76 (47.37%), Postives = 58/76 (76.32%), Query Frame = 2 Query: 434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661 +++IRLARFG K +P+Y+++ A+S SPRDGK LE +G Y+PL +D R+ L+ +R++YW SVGA+P++ V + + Sbjct: 7 MLKIRLARFGRKKRPYYKIVVANSSSPRDGKFLEQVGSYDPLLSKDDPLRVCLDIERIRYWTSVGAKPTERVAKFV 82
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_METRJ (30S ribosomal protein S16 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=rpsP PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16 Identity = 36/82 (43.90%), Postives = 60/82 (73.17%), Query Frame = 2 Query: 431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676 M ++IRL R G K +P+YR++ AD+R+PRDG+ ++ +G Y+P+ +D R+ L+ ++++ WL+ GAQP+D V R L +AGL Sbjct: 1 MALKIRLTRGGAKKRPYYRIVVADARAPRDGRFIDKVGAYDPMKAKDDPARIVLDNEKIQSWLAKGAQPTDRVLRFLDQAGL 82
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_MARMM (30S ribosomal protein S16 OS=Maricaulis maris (strain MCS10) GN=rpsP PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16 Identity = 38/77 (49.35%), Postives = 59/77 (76.62%), Query Frame = 2 Query: 431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661 M ++IRLAR G K +P+YR++ ADSRSPRDG+ +E +G YNP+ +D G+R+ L+ ++VK W++ GA+P+D V R + Sbjct: 1 MSLKIRLARGGAKKRPYYRIVVADSRSPRDGRFIEKIGSYNPMLPKD-GQRVELDMEKVKAWIAKGAKPTDRVGRFI 76
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_CLOB8 (30S ribosomal protein S16 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rpsP PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16 Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 2 Query: 431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676 M V+IRL R G K PFYR++ ADSR+PRDGK ++ +GYYNPL K +N ++ WLS GAQP++ V+R+ AGL Sbjct: 1 MAVKIRLRRMGAKKAPFYRIIVADSRAPRDGKFIDEIGYYNPLTEPVEVK---INEEKANEWLSNGAQPTEVVKRLFNNAGL 79
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BARQU (30S ribosomal protein S16 OS=Bartonella quintana GN=rpsP PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16 Identity = 40/82 (48.78%), Postives = 59/82 (71.95%), Query Frame = 2 Query: 431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676 M ++IRL+R G K +P+Y ++ AD+RSPRDG+ LE +G ++P+ +D G R+ LN +R++YWL GAQP+D V R L GL Sbjct: 1 MALKIRLSRGGSKKRPYYHIVVADARSPRDGRFLERVGAWDPMLPKD-GPRVKLNEERIQYWLGQGAQPTDRVLRFLDAVGL 81
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_LACF3 (30S ribosomal protein S16 OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=rpsP PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.110e-15 Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 2 Query: 431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679 M V+IRL R G K +PFYR++ ADSRSPRDG+ + LG YNPL + K++ + D V WL GAQPSD V+ +L +AG++ Sbjct: 1 MSVKIRLKRMGSKKRPFYRIVVADSRSPRDGRFITSLGTYNPL---TTPKQVKFDEDAVMEWLQKGAQPSDTVRNMLQKAGVM 80
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_PORGI (30S ribosomal protein S16 OS=Porphyromonas gingivalis GN=rpsP PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.450e-15 Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 2 Query: 431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL--PHLL 691 M +IRL R G K FY+++ ADSR+PRDGK +E +G YNP + + LNF+R YW+ VGAQP+D + IL R G+L HLL Sbjct: 1 MATKIRLQRHGRKGYAFYKIVVADSRAPRDGKFIERIGSYNP---NTNPATIDLNFERALYWIGVGAQPTDTARNILSREGVLMMKHLL 86
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_PORG3 (30S ribosomal protein S16 OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=rpsP PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.450e-15 Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 2 Query: 431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL--PHLL 691 M +IRL R G K FY+++ ADSR+PRDGK +E +G YNP + + LNF+R YW+ VGAQP+D + IL R G+L HLL Sbjct: 1 MATKIRLQRHGRKGYAFYKIVVADSRAPRDGKFIERIGSYNP---NTNPATIDLNFERALYWIGVGAQPTDTARNILSREGVLMMKHLL 86
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_HELMI (30S ribosomal protein S16 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rpsP PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.450e-15 Identity = 42/83 (50.60%), Postives = 55/83 (66.27%), Query Frame = 2 Query: 431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679 M RIRL R G K PFYRV+ ADSRSPRDG+ +E +GYYNP + ++ ++ WLS GAQPSD V+ +L +AG+L Sbjct: 1 MATRIRLKRLGMKKAPFYRVVVADSRSPRDGRFIEEIGYYNP---TKEPAILQIDEEKAIKWLSSGAQPSDTVKALLNKAGIL 80 The following BLAST results are available for this feature:
BLAST of FC931767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931767 ID=FC931767; Name=FC931767; organism=Citrus clementina; type=EST; length=692bpback to top |