FC931767

Overview
NameFC931767
Unique NameFC931767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_THET2 (30S ribosomal protein S16 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rpsP PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16
Identity = 38/81 (46.91%), Postives = 60/81 (74.07%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            +V+IRLARFG K+ P YR++  D+R  RDGK++E +GYY+  P + +   + ++ +R +YWLSVGAQP+D  +R+L +AG+
Sbjct:    1 MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYD--PRKTTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAGV 79          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_NEOSM (30S ribosomal protein S16 OS=Neorickettsia sennetsu (strain Miyayama) GN=rpsP PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16
Identity = 36/76 (47.37%), Postives = 58/76 (76.32%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            +++IRLARFG K +P+Y+++ A+S SPRDGK LE +G Y+PL  +D   R+ L+ +R++YW SVGA+P++ V + +
Sbjct:    7 MLKIRLARFGRKKRPYYKIVVANSSSPRDGKFLEQVGSYDPLLSKDDPLRVCLDIERIRYWTSVGAKPTERVAKFV 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_METRJ (30S ribosomal protein S16 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=rpsP PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16
Identity = 36/82 (43.90%), Postives = 60/82 (73.17%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M ++IRL R G K +P+YR++ AD+R+PRDG+ ++ +G Y+P+  +D   R+ L+ ++++ WL+ GAQP+D V R L +AGL
Sbjct:    1 MALKIRLTRGGAKKRPYYRIVVADARAPRDGRFIDKVGAYDPMKAKDDPARIVLDNEKIQSWLAKGAQPTDRVLRFLDQAGL 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_MARMM (30S ribosomal protein S16 OS=Maricaulis maris (strain MCS10) GN=rpsP PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16
Identity = 38/77 (49.35%), Postives = 59/77 (76.62%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            M ++IRLAR G K +P+YR++ ADSRSPRDG+ +E +G YNP+  +D G+R+ L+ ++VK W++ GA+P+D V R +
Sbjct:    1 MSLKIRLARGGAKKRPYYRIVVADSRSPRDGRFIEKIGSYNPMLPKD-GQRVELDMEKVKAWIAKGAKPTDRVGRFI 76          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_CLOB8 (30S ribosomal protein S16 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rpsP PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V+IRL R G K  PFYR++ ADSR+PRDGK ++ +GYYNPL      K   +N ++   WLS GAQP++ V+R+   AGL
Sbjct:    1 MAVKIRLRRMGAKKAPFYRIIVADSRAPRDGKFIDEIGYYNPLTEPVEVK---INEEKANEWLSNGAQPTEVVKRLFNNAGL 79          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BARQU (30S ribosomal protein S16 OS=Bartonella quintana GN=rpsP PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16
Identity = 40/82 (48.78%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M ++IRL+R G K +P+Y ++ AD+RSPRDG+ LE +G ++P+  +D G R+ LN +R++YWL  GAQP+D V R L   GL
Sbjct:    1 MALKIRLSRGGSKKRPYYHIVVADARSPRDGRFLERVGAWDPMLPKD-GPRVKLNEERIQYWLGQGAQPTDRVLRFLDAVGL 81          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_LACF3 (30S ribosomal protein S16 OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=rpsP PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.110e-15
Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K +PFYR++ ADSRSPRDG+ +  LG YNPL    + K++  + D V  WL  GAQPSD V+ +L +AG++
Sbjct:    1 MSVKIRLKRMGSKKRPFYRIVVADSRSPRDGRFITSLGTYNPL---TTPKQVKFDEDAVMEWLQKGAQPSDTVRNMLQKAGVM 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_PORGI (30S ribosomal protein S16 OS=Porphyromonas gingivalis GN=rpsP PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.450e-15
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL--PHLL 691
            M  +IRL R G K   FY+++ ADSR+PRDGK +E +G YNP     +   + LNF+R  YW+ VGAQP+D  + IL R G+L   HLL
Sbjct:    1 MATKIRLQRHGRKGYAFYKIVVADSRAPRDGKFIERIGSYNP---NTNPATIDLNFERALYWIGVGAQPTDTARNILSREGVLMMKHLL 86          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_PORG3 (30S ribosomal protein S16 OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=rpsP PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.450e-15
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL--PHLL 691
            M  +IRL R G K   FY+++ ADSR+PRDGK +E +G YNP     +   + LNF+R  YW+ VGAQP+D  + IL R G+L   HLL
Sbjct:    1 MATKIRLQRHGRKGYAFYKIVVADSRAPRDGKFIERIGSYNP---NTNPATIDLNFERALYWIGVGAQPTDTARNILSREGVLMMKHLL 86          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_HELMI (30S ribosomal protein S16 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rpsP PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.450e-15
Identity = 42/83 (50.60%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M  RIRL R G K  PFYRV+ ADSRSPRDG+ +E +GYYNP         + ++ ++   WLS GAQPSD V+ +L +AG+L
Sbjct:    1 MATRIRLKRLGMKKAPFYRVVVADSRSPRDGRFIEEIGYYNP---TKEPAILQIDEEKAIKWLSSGAQPSDTVKALLNKAGIL 80          
The following BLAST results are available for this feature:
BLAST of FC931767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_THET28.502e-1646.9130S ribosomal protein S16 OS=Thermus thermophilus ... [more]
RS16_NEOSM8.502e-1647.3730S ribosomal protein S16 OS=Neorickettsia sennets... [more]
RS16_METRJ8.502e-1643.9030S ribosomal protein S16 OS=Methylobacterium radi... [more]
RS16_MARMM8.502e-1649.3530S ribosomal protein S16 OS=Maricaulis maris (str... [more]
RS16_CLOB88.502e-1650.0030S ribosomal protein S16 OS=Clostridium beijerinc... [more]
RS16_BARQU8.502e-1648.7830S ribosomal protein S16 OS=Bartonella quintana G... [more]
RS16_LACF31.110e-1550.6030S ribosomal protein S16 OS=Lactobacillus ferment... [more]
RS16_PORGI1.450e-1548.3130S ribosomal protein S16 OS=Porphyromonas gingiva... [more]
RS16_PORG31.450e-1548.3130S ribosomal protein S16 OS=Porphyromonas gingiva... [more]
RS16_HELMI1.450e-1550.6030S ribosomal protein S16 OS=Heliobacterium modest... [more]

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Properties
Property NameValue
Genbank descriptionC34201A03EF PostHarveN Citrus clementina cDNA clone C34201A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931767 ID=FC931767; Name=FC931767; organism=Citrus clementina; type=EST; length=692bp
AACAAATCAAACAAACCCTGAAGCAGAAAGCCTGGAACTATCTTGCGGTT
TCTCCTCTCTGCCCACTGAAGACAGAAGGTGCCGGTGCCGGCTGCCGCTA
AAAATACCCACGCCACGACACAGCTGCGCCACGTTCTAGCCGCTGATAGC
CTCACGCGTCACCACGACAGGCACGAGCCGCCGACAGCCTCTGAGCCTCA
GCCCAAAACAGTCGCAGTTCTGCCGACGGCCTCACCACACGTCAGCCTCA
TCTCTCCTCTCTCAAATCAGCGTCAGTCCACAACAACCGTACCACAGCAG
CCTCAATCGACTACAGAAACCCACGACCGCAGCTCACGGCAGCAGGCCAG
CAGCCCACGAGTCCACGACAACAACCTCAGCGAACCAGCCTCAGCAAAAA
AAGCGCAGAGGGTATCCAGGAAAAGAAAAGATGGTGGTGAGGATTCGATT
GGCGAGATTCGGATGTAAGAACAAACCTTTCTATCGGGTGATGGCTGCTG
ATAGCCGATCACCCAGAGATGGTAAGCATCTTGAAGTCTTGGGCTATTAC
AACCCCTTGCCAGGTCAAGACAGCGGCAAAAGAATGGGTCTGAATTTTGA
TAGAGTGAAGTATTGGCTATCAGTTGGTGCTCAACCATCGGACCCTGTCC
AGCGCATTCTTTTCAGGGCAGGGTTGCTACCCCACCTCCTAT
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