FC931767

Overview
NameFC931767
Unique NameFC931767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_CHLAD (30S ribosomal protein S16 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rpsP PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.474e-15
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            +V+IRL R G   +P YR++ ADSRSPRDGK +E +GYY P       K + +N DR +YWL VGAQP+D V ++L R  +L
Sbjct:    1 MVKIRLRRTGKTKQPSYRIVVADSRSPRDGKFIETIGYYLP---TRQPKVLEVNADRARYWLGVGAQPTDVVVKLLKRVNIL 79          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_METEP (30S ribosomal protein S16 OS=Methylobacterium extorquens (strain PA1) GN=rpsP PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.231e-15
Identity = 36/82 (43.90%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M ++IRL R G K +P+YR++ AD+R+PRDG+ ++ +G Y+P+  +D   R+ L+ ++++ WL+ GAQP+D V R L  AGL
Sbjct:    1 MSLKIRLTRGGAKKRPYYRIVIADARAPRDGRFIDKVGAYDPMKAKDDPARIVLDNEKIQSWLAKGAQPTDRVLRFLDAAGL 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_METC4 (30S ribosomal protein S16 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=rpsP PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.231e-15
Identity = 36/82 (43.90%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M ++IRL R G K +P+YR++ AD+R+PRDG+ ++ +G Y+P+  +D   R+ L+ ++++ WL+ GAQP+D V R L  AGL
Sbjct:    1 MSLKIRLTRGGAKKRPYYRIVIADARAPRDGRFIDKVGAYDPMKAKDDPARIVLDNEKIQSWLAKGAQPTDRVLRFLDAAGL 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_LARHH (30S ribosomal protein S16 OS=Laribacter hongkongensis (strain HLHK9) GN=rpsP PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.231e-15
Identity = 39/76 (51.32%), Postives = 55/76 (72.37%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            +V IRLAR G KN+PFY ++  DSR+ RDG+ +E +G+YNP+  + S +R+ LN DR+ YW  VGAQ SD V ++L
Sbjct:    1 MVVIRLARGGAKNRPFYNIVVTDSRNRRDGRFIERVGFYNPVAAEGS-ERIRLNSDRLAYWTGVGAQVSDAVAKLL 75          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BRUSU (30S ribosomal protein S16 OS=Brucella suis GN=rpsP PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.231e-15
Identity = 37/82 (45.12%), Postives = 62/82 (75.61%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M ++IRLAR G K +P+Y V+ AD R+PRDG+ +E +G +NP+  +D+ +R+ L+ +R+++W++ GAQP+D V R L +AG+
Sbjct:    1 MALKIRLARAGSKKRPYYHVVVADVRAPRDGRFIETVGSWNPVLPKDA-ERVKLDAERIQHWIAQGAQPTDRVLRFLDQAGI 81          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BRUO2 (30S ribosomal protein S16 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rpsP PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.231e-15
Identity = 37/82 (45.12%), Postives = 62/82 (75.61%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M ++IRLAR G K +P+Y V+ AD R+PRDG+ +E +G +NP+  +D+ +R+ L+ +R+++W++ GAQP+D V R L +AG+
Sbjct:    1 MALKIRLARAGSKKRPYYHVVVADVRAPRDGRFIETVGSWNPVLPKDA-ERVKLDAERIQHWIAQGAQPTDRVLRFLDQAGI 81          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BRUME (30S ribosomal protein S16 OS=Brucella melitensis GN=rpsP PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.231e-15
Identity = 37/82 (45.12%), Postives = 62/82 (75.61%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M ++IRLAR G K +P+Y V+ AD R+PRDG+ +E +G +NP+  +D+ +R+ L+ +R+++W++ GAQP+D V R L +AG+
Sbjct:    1 MALKIRLARAGSKKRPYYHVVVADVRAPRDGRFIETVGSWNPVLPKDA-ERVKLDAERIQHWIAQGAQPTDRVLRFLDQAGI 81          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BRUMB (30S ribosomal protein S16 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rpsP PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.231e-15
Identity = 37/82 (45.12%), Postives = 62/82 (75.61%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M ++IRLAR G K +P+Y V+ AD R+PRDG+ +E +G +NP+  +D+ +R+ L+ +R+++W++ GAQP+D V R L +AG+
Sbjct:    1 MALKIRLARAGSKKRPYYHVVVADVRAPRDGRFIETVGSWNPVLPKDA-ERVKLDAERIQHWIAQGAQPTDRVLRFLDQAGI 81          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BRUC2 (30S ribosomal protein S16 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rpsP PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.231e-15
Identity = 37/82 (45.12%), Postives = 62/82 (75.61%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M ++IRLAR G K +P+Y V+ AD R+PRDG+ +E +G +NP+  +D+ +R+ L+ +R+++W++ GAQP+D V R L +AG+
Sbjct:    1 MALKIRLARAGSKKRPYYHVVVADVRAPRDGRFIETVGSWNPVLPKDA-ERVKLDAERIQHWIAQGAQPTDRVLRFLDQAGI 81          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BRUAB (30S ribosomal protein S16 OS=Brucella abortus GN=rpsP PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.231e-15
Identity = 37/82 (45.12%), Postives = 62/82 (75.61%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M ++IRLAR G K +P+Y V+ AD R+PRDG+ +E +G +NP+  +D+ +R+ L+ +R+++W++ GAQP+D V R L +AG+
Sbjct:    1 MALKIRLARAGSKKRPYYHVVVADVRAPRDGRFIETVGSWNPVLPKDA-ERVKLDAERIQHWIAQGAQPTDRVLRFLDQAGI 81          
The following BLAST results are available for this feature:
BLAST of FC931767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_CHLAD2.474e-1550.0030S ribosomal protein S16 OS=Chloroflexus aggregan... [more]
RS16_METEP3.231e-1543.9030S ribosomal protein S16 OS=Methylobacterium exto... [more]
RS16_METC43.231e-1543.9030S ribosomal protein S16 OS=Methylobacterium chlo... [more]
RS16_LARHH3.231e-1551.3230S ribosomal protein S16 OS=Laribacter hongkongen... [more]
RS16_BRUSU3.231e-1545.1230S ribosomal protein S16 OS=Brucella suis GN=rpsP... [more]
RS16_BRUO23.231e-1545.1230S ribosomal protein S16 OS=Brucella ovis (strain... [more]
RS16_BRUME3.231e-1545.1230S ribosomal protein S16 OS=Brucella melitensis G... [more]
RS16_BRUMB3.231e-1545.1230S ribosomal protein S16 OS=Brucella melitensis b... [more]
RS16_BRUC23.231e-1545.1230S ribosomal protein S16 OS=Brucella canis (strai... [more]
RS16_BRUAB3.231e-1545.1230S ribosomal protein S16 OS=Brucella abortus GN=r... [more]

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Properties
Property NameValue
Genbank descriptionC34201A03EF PostHarveN Citrus clementina cDNA clone C34201A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931767 ID=FC931767; Name=FC931767; organism=Citrus clementina; type=EST; length=692bp
AACAAATCAAACAAACCCTGAAGCAGAAAGCCTGGAACTATCTTGCGGTT
TCTCCTCTCTGCCCACTGAAGACAGAAGGTGCCGGTGCCGGCTGCCGCTA
AAAATACCCACGCCACGACACAGCTGCGCCACGTTCTAGCCGCTGATAGC
CTCACGCGTCACCACGACAGGCACGAGCCGCCGACAGCCTCTGAGCCTCA
GCCCAAAACAGTCGCAGTTCTGCCGACGGCCTCACCACACGTCAGCCTCA
TCTCTCCTCTCTCAAATCAGCGTCAGTCCACAACAACCGTACCACAGCAG
CCTCAATCGACTACAGAAACCCACGACCGCAGCTCACGGCAGCAGGCCAG
CAGCCCACGAGTCCACGACAACAACCTCAGCGAACCAGCCTCAGCAAAAA
AAGCGCAGAGGGTATCCAGGAAAAGAAAAGATGGTGGTGAGGATTCGATT
GGCGAGATTCGGATGTAAGAACAAACCTTTCTATCGGGTGATGGCTGCTG
ATAGCCGATCACCCAGAGATGGTAAGCATCTTGAAGTCTTGGGCTATTAC
AACCCCTTGCCAGGTCAAGACAGCGGCAAAAGAATGGGTCTGAATTTTGA
TAGAGTGAAGTATTGGCTATCAGTTGGTGCTCAACCATCGGACCCTGTCC
AGCGCATTCTTTTCAGGGCAGGGTTGCTACCCCACCTCCTAT
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