FC931767

Overview
NameFC931767
Unique NameFC931767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BRUA2 (30S ribosomal protein S16 OS=Brucella abortus (strain 2308) GN=rpsP PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.231e-15
Identity = 37/82 (45.12%), Postives = 62/82 (75.61%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M ++IRLAR G K +P+Y V+ AD R+PRDG+ +E +G +NP+  +D+ +R+ L+ +R+++W++ GAQP+D V R L +AG+
Sbjct:    1 MALKIRLARAGSKKRPYYHVVVADVRAPRDGRFIETVGSWNPVLPKDA-ERVKLDAERIQHWIAQGAQPTDRVLRFLDQAGI 81          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BRUA1 (30S ribosomal protein S16 OS=Brucella abortus (strain S19) GN=rpsP PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.231e-15
Identity = 37/82 (45.12%), Postives = 62/82 (75.61%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M ++IRLAR G K +P+Y V+ AD R+PRDG+ +E +G +NP+  +D+ +R+ L+ +R+++W++ GAQP+D V R L +AG+
Sbjct:    1 MALKIRLARAGSKKRPYYHVVVADVRAPRDGRFIETVGSWNPVLPKDA-ERVKLDAERIQHWIAQGAQPTDRVLRFLDQAGI 81          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BACHD (30S ribosomal protein S16 OS=Bacillus halodurans GN=rpsP PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.231e-15
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPHL 688
            M V+IRL R G K  PFYRV+ ADSRSPRDG+ +E +G YNPL       ++ L  DR   W+  GA+PSD V+ +  +AGL+  L
Sbjct:    1 MAVKIRLKRMGSKKAPFYRVVVADSRSPRDGRFIEEIGTYNPL---TQPAKVELKEDRALDWMLKGAKPSDTVRNLFSKAGLMEKL 83          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_ALKOO (30S ribosomal protein S16 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rpsP PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.231e-15
Identity = 37/83 (44.58%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G   KPFYR++ AD+RSPRDG+ +E +GYYNP+      K + +N ++ + WL  GAQP+D V+ +  + G++
Sbjct:    1 MAVKIRLKRMGAHKKPFYRIVVADARSPRDGRFIEEIGYYNPV---SEPKEIKINNEKAEKWLKNGAQPTDTVKDLFKKNGII 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_LEUCK (30S ribosomal protein S16 OS=Leuconostoc citreum (strain KM20) GN=rpsP PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.220e-15
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K +PFYRV+ ADSRSPRDG+ +E +G YNP+        + L+  ++  WLS GAQPSD  + +L  AG+L
Sbjct:    1 MSVKIRLKRMGAKKRPFYRVVIADSRSPRDGRFIETVGTYNPIA---QPAEIKLDEAKILTWLSNGAQPSDTARNLLSNAGIL 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_EXISA (30S ribosomal protein S16 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rpsP PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.220e-15
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K  PFYR++ ADSRSPRDG+ +E +G+YNP+   ++  R  +N +    WL+ GA+PSD V+ +  +AG++
Sbjct:    1 MAVKIRLKRMGAKKSPFYRIVVADSRSPRDGRFIEQVGHYNPVAKPEAEVR--INEELALKWLADGAKPSDTVRNLFSKAGIM 81          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_EXIS2 (30S ribosomal protein S16 OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=rpsP PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.220e-15
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G    PFYRV+ ADSR+PRDG+ +E +GYYNP+   ++   + LN +    WL+ GA+PSD V+ +  +AG++
Sbjct:    1 MAVKIRLKRMGANKSPFYRVVVADSRAPRDGRFIEQIGYYNPVAKPEA--EVKLNEELALKWLAEGAKPSDTVRNLFSKAGIM 81          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_CLONN (30S ribosomal protein S16 OS=Clostridium novyi (strain NT) GN=rpsP PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.220e-15
Identity = 39/82 (47.56%), Postives = 55/82 (67.07%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V+IRL R G K  PFYRV+ ADSRSPRDG+ +E +GYYNP+      K + ++ ++   W+  GAQP+D V+R+   AG+
Sbjct:    1 MAVKIRLRRMGAKKAPFYRVVVADSRSPRDGRFVEEIGYYNPI---SEPKAIKIDEEKAIKWVKNGAQPTDVVKRLFKEAGI 79          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BEII9 (30S ribosomal protein S16 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rpsP PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.220e-15
Identity = 36/77 (46.75%), Postives = 58/77 (75.32%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            M ++IRLAR G K +PFYR++ AD+R+PRDG+ +E +G ++PL  +++  R+ L+ ++ K WL+ GAQP+D V R+L
Sbjct:    1 MSLKIRLARGGAKKRPFYRIVVADARAPRDGRFIERIGTFDPLKAKNAPDRIVLDAEKAKDWLAKGAQPTDRVARLL 77          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_PEDPA (30S ribosomal protein S16 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rpsP PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.511e-15
Identity = 42/83 (50.60%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K +PFYRV+ ADSRSPRDG+ +  +G YNPL    S K   L  + +  WL+ GAQPSD V+ I  +AG++
Sbjct:    1 MSVKIRLKRMGSKKRPFYRVVVADSRSPRDGRFIAQVGTYNPLTEPASVK---LEEEEILNWLNNGAQPSDTVKNIFSKAGIM 80          
The following BLAST results are available for this feature:
BLAST of FC931767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_BRUA23.231e-1545.1230S ribosomal protein S16 OS=Brucella abortus (str... [more]
RS16_BRUA13.231e-1545.1230S ribosomal protein S16 OS=Brucella abortus (str... [more]
RS16_BACHD3.231e-1548.8430S ribosomal protein S16 OS=Bacillus halodurans G... [more]
RS16_ALKOO3.231e-1544.5830S ribosomal protein S16 OS=Alkaliphilus oremland... [more]
RS16_LEUCK4.220e-1549.4030S ribosomal protein S16 OS=Leuconostoc citreum (... [more]
RS16_EXISA4.220e-1545.7830S ribosomal protein S16 OS=Exiguobacterium sp. (... [more]
RS16_EXIS24.220e-1545.7830S ribosomal protein S16 OS=Exiguobacterium sibir... [more]
RS16_CLONN4.220e-1547.5630S ribosomal protein S16 OS=Clostridium novyi (st... [more]
RS16_BEII94.220e-1546.7530S ribosomal protein S16 OS=Beijerinckia indica s... [more]
RS16_PEDPA5.511e-1550.6030S ribosomal protein S16 OS=Pediococcus pentosace... [more]

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Properties
Property NameValue
Genbank descriptionC34201A03EF PostHarveN Citrus clementina cDNA clone C34201A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931767 ID=FC931767; Name=FC931767; organism=Citrus clementina; type=EST; length=692bp
AACAAATCAAACAAACCCTGAAGCAGAAAGCCTGGAACTATCTTGCGGTT
TCTCCTCTCTGCCCACTGAAGACAGAAGGTGCCGGTGCCGGCTGCCGCTA
AAAATACCCACGCCACGACACAGCTGCGCCACGTTCTAGCCGCTGATAGC
CTCACGCGTCACCACGACAGGCACGAGCCGCCGACAGCCTCTGAGCCTCA
GCCCAAAACAGTCGCAGTTCTGCCGACGGCCTCACCACACGTCAGCCTCA
TCTCTCCTCTCTCAAATCAGCGTCAGTCCACAACAACCGTACCACAGCAG
CCTCAATCGACTACAGAAACCCACGACCGCAGCTCACGGCAGCAGGCCAG
CAGCCCACGAGTCCACGACAACAACCTCAGCGAACCAGCCTCAGCAAAAA
AAGCGCAGAGGGTATCCAGGAAAAGAAAAGATGGTGGTGAGGATTCGATT
GGCGAGATTCGGATGTAAGAACAAACCTTTCTATCGGGTGATGGCTGCTG
ATAGCCGATCACCCAGAGATGGTAAGCATCTTGAAGTCTTGGGCTATTAC
AACCCCTTGCCAGGTCAAGACAGCGGCAAAAGAATGGGTCTGAATTTTGA
TAGAGTGAAGTATTGGCTATCAGTTGGTGCTCAACCATCGGACCCTGTCC
AGCGCATTCTTTTCAGGGCAGGGTTGCTACCCCACCTCCTAT
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