FC931767

Overview
NameFC931767
Unique NameFC931767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_LACSS (30S ribosomal protein S16 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rpsP PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 39/83 (46.99%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IR+ R G K +PFYR++ ADSRSPRDG+ ++ +GYYNPL      K   L  + +  WL  GAQPSD V+ +L + G++
Sbjct:    1 MSVKIRMKRMGSKKRPFYRIVVADSRSPRDGRFIQQVGYYNPLTEPVDLK---LEEEVIMDWLQKGAQPSDTVRNLLSKQGIM 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_LACBA (30S ribosomal protein S16 OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rpsP PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K +PFYRV+ ADSRSPRDG+ +E +G YNP+       ++ L  + +  WL+ GAQPSD V+ +L  AG++
Sbjct:    1 MSVKIRLKRMGSKKRPFYRVVVADSRSPRDGRFIEQVGTYNPV---TEPAQVTLKEESILNWLNNGAQPSDTVKTLLSNAGIM 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_CLOPS (30S ribosomal protein S16 OS=Clostridium perfringens (strain SM101 / Type A) GN=rpsP PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 37/82 (45.12%), Postives = 56/82 (68.29%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V+IRL R G    PFYRV+ ADSRSPRDG+ +E +GYYNP+   ++   + ++ ++   WL  GAQP+D V+++  +AG+
Sbjct:    1 MAVKIRLRRMGAHKAPFYRVVVADSRSPRDGRFIEEIGYYNPIAKPEA--EVKIDAEKAAKWLGNGAQPTDIVKKLFNQAGI 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_CLOPE (30S ribosomal protein S16 OS=Clostridium perfringens GN=rpsP PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 37/82 (45.12%), Postives = 56/82 (68.29%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V+IRL R G    PFYRV+ ADSRSPRDG+ +E +GYYNP+   ++   + ++ ++   WL  GAQP+D V+++  +AG+
Sbjct:    1 MAVKIRLRRMGAHKAPFYRVVVADSRSPRDGRFIEEIGYYNPIAKPEA--EVKIDAEKAAKWLGNGAQPTDIVKKLFNQAGI 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_CLOP1 (30S ribosomal protein S16 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rpsP PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 37/82 (45.12%), Postives = 56/82 (68.29%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V+IRL R G    PFYRV+ ADSRSPRDG+ +E +GYYNP+   ++   + ++ ++   WL  GAQP+D V+++  +AG+
Sbjct:    1 MAVKIRLRRMGAHKAPFYRVVVADSRSPRDGRFIEEIGYYNPIAKPEA--EVKIDAEKAAKWLGNGAQPTDIVKKLFNQAGI 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BACFR (30S ribosomal protein S16 OS=Bacteroides fragilis GN=rpsP PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 44/89 (49.44%), Postives = 56/89 (62.92%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAG--LLPHLL 691
            M  RIRL R G K+  FY ++ ADSR+PRDGK  E +G YNP     +   + LNF+R  +W+ VGAQPSD V+ IL R G  +  HLL
Sbjct:    1 MATRIRLQRHGRKSYAFYSIVIADSRAPRDGKFTEKIGTYNP---NTNPATVDLNFERALHWVLVGAQPSDTVRNILSREGVYMKKHLL 86          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BACFN (30S ribosomal protein S16 OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=rpsP PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 44/89 (49.44%), Postives = 56/89 (62.92%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAG--LLPHLL 691
            M  RIRL R G K+  FY ++ ADSR+PRDGK  E +G YNP     +   + LNF+R  +W+ VGAQPSD V+ IL R G  +  HLL
Sbjct:    1 MATRIRLQRHGRKSYAFYSIVIADSRAPRDGKFTEKIGTYNP---NTNPATVDLNFERALHWVLVGAQPSDTVRNILSREGVYMKKHLL 86          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_ANOFW (30S ribosomal protein S16 OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rpsP PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K  PFYR++ ADSRSPRDG+ +E +G YNPL        + +N +    WL  GA+PSD V+ +L + G+L
Sbjct:    1 MAVKIRLKRMGAKKSPFYRIVVADSRSPRDGRFIETIGTYNPL---TEPAEIKINEELALKWLQNGAKPSDTVRNLLSKQGIL 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_ALKMQ (30S ribosomal protein S16 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rpsP PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 35/83 (42.17%), Postives = 57/83 (68.67%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K +PFYR++ AD+R+PRDG+ +E +GYYNP+      K + ++ ++ + WL  GAQP+D V+ +  + G++
Sbjct:    1 MAVKIRLKRMGAKKRPFYRIVVADARAPRDGRFIEEIGYYNPV---SEPKEIKIDGEKAEKWLGNGAQPTDTVKYLFKKNGII 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_LACRJ (30S ribosomal protein S16 OS=Lactobacillus reuteri (strain JCM 1112) GN=rpsP PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K +PFYR++ ADSR+PRDG+ +  +G YNPL    + K +  + D V  WL  GAQPSD V+ +L  AG++
Sbjct:    1 MSVKIRLKRMGSKKRPFYRIVVADSRAPRDGRFITSVGTYNPL---TTPKEVKFDEDAVMEWLQKGAQPSDTVRNMLQAAGVM 80          
The following BLAST results are available for this feature:
BLAST of FC931767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_LACSS1.228e-1446.9930S ribosomal protein S16 OS=Lactobacillus sakei s... [more]
RS16_LACBA1.228e-1448.1930S ribosomal protein S16 OS=Lactobacillus brevis ... [more]
RS16_CLOPS1.228e-1445.1230S ribosomal protein S16 OS=Clostridium perfringe... [more]
RS16_CLOPE1.228e-1445.1230S ribosomal protein S16 OS=Clostridium perfringe... [more]
RS16_CLOP11.228e-1445.1230S ribosomal protein S16 OS=Clostridium perfringe... [more]
RS16_BACFR1.228e-1449.4430S ribosomal protein S16 OS=Bacteroides fragilis ... [more]
RS16_BACFN1.228e-1449.4430S ribosomal protein S16 OS=Bacteroides fragilis ... [more]
RS16_ANOFW1.228e-1446.9930S ribosomal protein S16 OS=Anoxybacillus flavith... [more]
RS16_ALKMQ1.228e-1442.1730S ribosomal protein S16 OS=Alkaliphilus metallir... [more]
RS16_LACRJ1.603e-1448.1930S ribosomal protein S16 OS=Lactobacillus reuteri... [more]

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Properties
Property NameValue
Genbank descriptionC34201A03EF PostHarveN Citrus clementina cDNA clone C34201A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931767 ID=FC931767; Name=FC931767; organism=Citrus clementina; type=EST; length=692bp
AACAAATCAAACAAACCCTGAAGCAGAAAGCCTGGAACTATCTTGCGGTT
TCTCCTCTCTGCCCACTGAAGACAGAAGGTGCCGGTGCCGGCTGCCGCTA
AAAATACCCACGCCACGACACAGCTGCGCCACGTTCTAGCCGCTGATAGC
CTCACGCGTCACCACGACAGGCACGAGCCGCCGACAGCCTCTGAGCCTCA
GCCCAAAACAGTCGCAGTTCTGCCGACGGCCTCACCACACGTCAGCCTCA
TCTCTCCTCTCTCAAATCAGCGTCAGTCCACAACAACCGTACCACAGCAG
CCTCAATCGACTACAGAAACCCACGACCGCAGCTCACGGCAGCAGGCCAG
CAGCCCACGAGTCCACGACAACAACCTCAGCGAACCAGCCTCAGCAAAAA
AAGCGCAGAGGGTATCCAGGAAAAGAAAAGATGGTGGTGAGGATTCGATT
GGCGAGATTCGGATGTAAGAACAAACCTTTCTATCGGGTGATGGCTGCTG
ATAGCCGATCACCCAGAGATGGTAAGCATCTTGAAGTCTTGGGCTATTAC
AACCCCTTGCCAGGTCAAGACAGCGGCAAAAGAATGGGTCTGAATTTTGA
TAGAGTGAAGTATTGGCTATCAGTTGGTGCTCAACCATCGGACCCTGTCC
AGCGCATTCTTTTCAGGGCAGGGTTGCTACCCCACCTCCTAT
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