FC931767

Overview
NameFC931767
Unique NameFC931767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15503 contig Ccv1_Contig15503:27..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RHILO (30S ribosomal protein S16 OS=Rhizobium loti GN=rpsP PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.122e-18
Identity = 46/82 (56.10%), Postives = 62/82 (75.61%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M ++IRLAR G K +P+Y V+ AD+RSPRDG+ +E LG +NPL  +D G+R+ ++ DRVK+WLS GAQP+D V R L  AGL
Sbjct:    1 MALKIRLARAGSKKRPYYHVVVADARSPRDGRFIESLGSWNPLLPKD-GERVKVDADRVKHWLSHGAQPTDRVLRFLDEAGL 81          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_NITWN (30S ribosomal protein S16 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rpsP PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.122e-18
Identity = 46/82 (56.10%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V IRLAR G K +P Y V+AADSR PRDG+ +E LG++NPL  +D+  R+ L+ D+VK WL+ GAQPSD V R L  AG+
Sbjct:    1 MPVVIRLARAGTKKRPVYHVVAADSRYPRDGRFIERLGHFNPLMPKDNADRLKLDLDKVKAWLAKGAQPSDRVARFLDAAGV 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_OLICO (30S ribosomal protein S16 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rpsP PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.078e-18
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V IRLAR G K +P Y V+ ADSR PRDG+ +E LGY+NPL  +D+  R+ L+ D+VK WL+ GAQPSD V R L  AG+
Sbjct:    1 MSVVIRLARAGTKKRPVYHVVVADSRFPRDGRFIERLGYFNPLLPKDNEARLKLDMDKVKAWLAKGAQPSDRVMRFLDAAGV 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_NITHX (30S ribosomal protein S16 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rpsP PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.078e-18
Identity = 45/82 (54.88%), Postives = 58/82 (70.73%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V IRLAR G K +P Y V+ ADSR PRDG+ +E LGY+NPL  +D+  R+ ++ D+VK WL+ GAQPSD V R L  AG+
Sbjct:    1 MPVVIRLARAGTKKRPVYHVVVADSRYPRDGRFIERLGYFNPLMPKDNADRLKIDLDKVKAWLAKGAQPSDRVARFLDAAGV 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_AZOC5 (30S ribosomal protein S16 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rpsP PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.078e-18
Identity = 42/83 (50.60%), Postives = 61/83 (73.49%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M ++IRLAR G K +P+YR++ AD+RSPRDG+ +E +G +NPL  +D+ +R+ L+ ++ K WL  GAQP+D V R L  AGLL
Sbjct:    1 MSLKIRLARGGAKKRPYYRIVVADARSPRDGRFIEKIGTFNPLLAKDAAERVTLDTEKAKAWLEKGAQPTDRVARFLDAAGLL 83          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_ACICJ (30S ribosomal protein S16 OS=Acidiphilium cryptum (strain JF-5) GN=rpsP PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.078e-18
Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLP 682
            M ++IRLAR G K +PFY ++ ADSRSPRDGK +E +G YNP+   D   R+ L  DRV +WLS GAQ +D V R + +AGL P
Sbjct:    1 MSLKIRLARAGAKKRPFYHIVVADSRSPRDGKFIERIGTYNPMLPADHEDRIRLVTDRVTHWLSQGAQATDRVARFIGKAGLAP 84          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_THETN (30S ribosomal protein S16 OS=Thermoanaerobacter tengcongensis GN=rpsP PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.955e-18
Identity = 41/83 (49.40%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M VRIRL RFG K +PFYR++ ADSRSPRDG+ ++ +GYYNP+        + ++ ++ K WLSVGAQPSD V+ +  + G++
Sbjct:    1 MAVRIRLKRFGAKKRPFYRIVVADSRSPRDGRFIDEIGYYNPIA---EPAEIKIDVEKAKKWLSVGAQPSDTVKSLFRKEGII 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_THEPX (30S ribosomal protein S16 OS=Thermoanaerobacter sp. (strain X514) GN=rpsP PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.955e-18
Identity = 41/83 (49.40%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M VRIRL RFG K +PFYR++ ADSRSPRDG+ ++ +GYYNP+        + ++ ++ K WLSVGAQPSD V+ +  + G++
Sbjct:    1 MAVRIRLKRFGAKKRPFYRIVVADSRSPRDGRFIDEIGYYNPIA---QPAEIKIDVEKAKKWLSVGAQPSDTVKSLFKKEGII 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_THEP3 (30S ribosomal protein S16 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rpsP PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.955e-18
Identity = 41/83 (49.40%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M VRIRL RFG K +PFYR++ ADSRSPRDG+ ++ +GYYNP+        + ++ ++ K WLSVGAQPSD V+ +  + G++
Sbjct:    1 MAVRIRLKRFGAKKRPFYRIVVADSRSPRDGRFIDEIGYYNPIA---QPAEIKIDVEKAKKWLSVGAQPSDTVKSLFKKEGII 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_XANP2 (30S ribosomal protein S16 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rpsP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.084e-18
Identity = 42/83 (50.60%), Postives = 60/83 (72.29%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M ++IRLAR G K +P+YR++ AD+RSPRDG+ +E +G +NPL  +D+  R+ L+ D+ K WL  GAQP+D V R L  AGL+
Sbjct:    1 MSLKIRLARGGAKKRPYYRIVIADARSPRDGRFIEKIGTFNPLLAKDAENRVVLDADKAKAWLEKGAQPTDRVARFLDAAGLM 83          
The following BLAST results are available for this feature:
BLAST of FC931767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_RHILO3.122e-1856.1030S ribosomal protein S16 OS=Rhizobium loti GN=rps... [more]
RS16_NITWN3.122e-1856.1030S ribosomal protein S16 OS=Nitrobacter winograds... [more]
RS16_OLICO4.078e-1856.1030S ribosomal protein S16 OS=Oligotropha carboxido... [more]
RS16_NITHX4.078e-1854.8830S ribosomal protein S16 OS=Nitrobacter hamburgen... [more]
RS16_AZOC54.078e-1850.6030S ribosomal protein S16 OS=Azorhizobium caulinod... [more]
RS16_ACICJ4.078e-1853.5730S ribosomal protein S16 OS=Acidiphilium cryptum ... [more]
RS16_THETN6.955e-1849.4030S ribosomal protein S16 OS=Thermoanaerobacter te... [more]
RS16_THEPX6.955e-1849.4030S ribosomal protein S16 OS=Thermoanaerobacter sp... [more]
RS16_THEP36.955e-1849.4030S ribosomal protein S16 OS=Thermoanaerobacter ps... [more]
RS16_XANP29.084e-1850.6030S ribosomal protein S16 OS=Xanthobacter autotrop... [more]

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Properties
Property NameValue
Genbank descriptionC34201A03EF PostHarveN Citrus clementina cDNA clone C34201A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931767 ID=FC931767; Name=FC931767; organism=Citrus clementina; type=EST; length=692bp
AACAAATCAAACAAACCCTGAAGCAGAAAGCCTGGAACTATCTTGCGGTT
TCTCCTCTCTGCCCACTGAAGACAGAAGGTGCCGGTGCCGGCTGCCGCTA
AAAATACCCACGCCACGACACAGCTGCGCCACGTTCTAGCCGCTGATAGC
CTCACGCGTCACCACGACAGGCACGAGCCGCCGACAGCCTCTGAGCCTCA
GCCCAAAACAGTCGCAGTTCTGCCGACGGCCTCACCACACGTCAGCCTCA
TCTCTCCTCTCTCAAATCAGCGTCAGTCCACAACAACCGTACCACAGCAG
CCTCAATCGACTACAGAAACCCACGACCGCAGCTCACGGCAGCAGGCCAG
CAGCCCACGAGTCCACGACAACAACCTCAGCGAACCAGCCTCAGCAAAAA
AAGCGCAGAGGGTATCCAGGAAAAGAAAAGATGGTGGTGAGGATTCGATT
GGCGAGATTCGGATGTAAGAACAAACCTTTCTATCGGGTGATGGCTGCTG
ATAGCCGATCACCCAGAGATGGTAAGCATCTTGAAGTCTTGGGCTATTAC
AACCCCTTGCCAGGTCAAGACAGCGGCAAAAGAATGGGTCTGAATTTTGA
TAGAGTGAAGTATTGGCTATCAGTTGGTGCTCAACCATCGGACCCTGTCC
AGCGCATTCTTTTCAGGGCAGGGTTGCTACCCCACCTCCTAT
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