FC931767

Overview
NameFC931767
Unique NameFC931767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15503 contig Ccv1_Contig15503:27..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_PSEU2 (30S ribosomal protein S16 OS=Pseudomonas syringae pv. syringae (strain B728a) GN=rpsP PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 37/77 (48.05%), Postives = 53/77 (68.83%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLP-GQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            ++ IRLA  G K +PFY +   DSR+ RDG H E +G++NP+  GQ+   R+ +N +RV YWLSVGAQ S+ V ++L
Sbjct:    1 MLTIRLALGGSKKRPFYHLTVTDSRNARDGSHKEQVGFFNPVARGQEI--RLSVNEERVNYWLSVGAQTSERVAQLL 75          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_PSE14 (30S ribosomal protein S16 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=rpsP PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 37/77 (48.05%), Postives = 53/77 (68.83%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLP-GQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            ++ IRLA  G K +PFY +   DSR+ RDG H E +G++NP+  GQ+   R+ +N +RV YWLSVGAQ S+ V ++L
Sbjct:    1 MLTIRLALGGSKKRPFYHLTVTDSRNARDGSHKEQVGFFNPVARGQEI--RLSVNEERVNYWLSVGAQTSERVAQLL 75          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_POLSJ (30S ribosomal protein S16 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=rpsP PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 36/77 (46.75%), Postives = 54/77 (70.13%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPL-PGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            +V IRLAR G K++PF+ ++ AD R  RDG+ +E +G+YNP+  G + G R+    DR+ +WL VGAQPS  V+R++
Sbjct:    1 MVVIRLARGGSKHRPFFNIVVADKRVRRDGRFIERIGFYNPIAKGGEEGLRIAQ--DRLTHWLGVGAQPSPTVERLV 75          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_MYCSK (30S ribosomal protein S16 OS=Mycobacterium sp. (strain KMS) GN=rpsP PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            M V+I+L R G    P YR++ AD+R+ RDG+ +EV+G Y+P   ++    + LN +R +YWL VGAQP++PV ++L
Sbjct:    1 MAVKIKLTRLGKIRNPQYRIVVADARTRRDGRSIEVIGRYHP---KEEPSLIELNSERAQYWLGVGAQPTEPVLQLL 74          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_MYCSJ (30S ribosomal protein S16 OS=Mycobacterium sp. (strain JLS) GN=rpsP PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            M V+I+L R G    P YR++ AD+R+ RDG+ +EV+G Y+P   ++    + LN +R +YWL VGAQP++PV ++L
Sbjct:    1 MAVKIKLTRLGKIRNPQYRIVVADARTRRDGRSIEVIGRYHP---KEEPSLIELNSERAQYWLGVGAQPTEPVLQLL 74          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_MYCPA (30S ribosomal protein S16 OS=Mycobacterium paratuberculosis GN=rpsP PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 33/77 (42.86%), Postives = 53/77 (68.83%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            M V+I+L R G    P YR+  AD+R+ RDG+ +E++G Y+P   ++    + +N +R +YWLSVGAQP++PV ++L
Sbjct:    1 MAVKIKLTRLGKIRNPQYRIAVADARTRRDGRSIEIIGRYHP---KEDPSLIEINSERAQYWLSVGAQPTEPVLKLL 74          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_MYCA1 (30S ribosomal protein S16 OS=Mycobacterium avium (strain 104) GN=rpsP PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 33/77 (42.86%), Postives = 53/77 (68.83%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            M V+I+L R G    P YR+  AD+R+ RDG+ +E++G Y+P   ++    + +N +R +YWLSVGAQP++PV ++L
Sbjct:    1 MAVKIKLTRLGKIRNPQYRIAVADARTRRDGRSIEIIGRYHP---KEDPSLIEINSERAQYWLSVGAQPTEPVLKLL 74          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_DESDA (30S ribosomal protein S16 OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=rpsP PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 35/77 (45.45%), Postives = 51/77 (66.23%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            M V+++L R G K  PFYRV+AA   + RDG+ LE LGYYNP+      K   L+ D++K WL+ GA+P+D V+ ++
Sbjct:    1 MAVKLKLTRLGSKKHPFYRVVAATDETRRDGRPLEFLGYYNPMTDPVEVK---LDADKIKEWLARGAEPTDTVRALI 74          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BUCAT (30S ribosomal protein S16 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=rpsP PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 31/76 (40.79%), Postives = 56/76 (73.68%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            +V+IRLAR+G K +PFY+++ ADSR  R+G+ +E LGY+NP+  +   + + LN +R+++W + GAQ S+  ++++
Sbjct:    1 MVKIRLARYGTKKRPFYKLVVADSRFSRNGRFIERLGYFNPI-AKGKSEILKLNLERIEHWTNQGAQMSERTKKLI 75          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BUCAI (30S ribosomal protein S16 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rpsP PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 31/76 (40.79%), Postives = 56/76 (73.68%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            +V+IRLAR+G K +PFY+++ ADSR  R+G+ +E LGY+NP+  +   + + LN +R+++W + GAQ S+  ++++
Sbjct:    1 MVKIRLARYGTKKRPFYKLVVADSRFSRNGRFIERLGYFNPI-AKGKSEILKLNLERIEHWTNQGAQMSERTKKLI 75          
The following BLAST results are available for this feature:
BLAST of FC931767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_PSEU21.501e-1248.0530S ribosomal protein S16 OS=Pseudomonas syringae ... [more]
RS16_PSE141.501e-1248.0530S ribosomal protein S16 OS=Pseudomonas syringae ... [more]
RS16_POLSJ1.501e-1246.7530S ribosomal protein S16 OS=Polaromonas sp. (stra... [more]
RS16_MYCSK1.501e-1244.1630S ribosomal protein S16 OS=Mycobacterium sp. (st... [more]
RS16_MYCSJ1.501e-1244.1630S ribosomal protein S16 OS=Mycobacterium sp. (st... [more]
RS16_MYCPA1.501e-1242.8630S ribosomal protein S16 OS=Mycobacterium paratub... [more]
RS16_MYCA11.501e-1242.8630S ribosomal protein S16 OS=Mycobacterium avium (... [more]
RS16_DESDA1.501e-1245.4530S ribosomal protein S16 OS=Desulfovibrio desulfu... [more]
RS16_BUCAT1.501e-1240.7930S ribosomal protein S16 OS=Buchnera aphidicola s... [more]
RS16_BUCAI1.501e-1240.7930S ribosomal protein S16 OS=Buchnera aphidicola s... [more]

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Properties
Property NameValue
Genbank descriptionC34201A03EF PostHarveN Citrus clementina cDNA clone C34201A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931767 ID=FC931767; Name=FC931767; organism=Citrus clementina; type=EST; length=692bp
AACAAATCAAACAAACCCTGAAGCAGAAAGCCTGGAACTATCTTGCGGTT
TCTCCTCTCTGCCCACTGAAGACAGAAGGTGCCGGTGCCGGCTGCCGCTA
AAAATACCCACGCCACGACACAGCTGCGCCACGTTCTAGCCGCTGATAGC
CTCACGCGTCACCACGACAGGCACGAGCCGCCGACAGCCTCTGAGCCTCA
GCCCAAAACAGTCGCAGTTCTGCCGACGGCCTCACCACACGTCAGCCTCA
TCTCTCCTCTCTCAAATCAGCGTCAGTCCACAACAACCGTACCACAGCAG
CCTCAATCGACTACAGAAACCCACGACCGCAGCTCACGGCAGCAGGCCAG
CAGCCCACGAGTCCACGACAACAACCTCAGCGAACCAGCCTCAGCAAAAA
AAGCGCAGAGGGTATCCAGGAAAAGAAAAGATGGTGGTGAGGATTCGATT
GGCGAGATTCGGATGTAAGAACAAACCTTTCTATCGGGTGATGGCTGCTG
ATAGCCGATCACCCAGAGATGGTAAGCATCTTGAAGTCTTGGGCTATTAC
AACCCCTTGCCAGGTCAAGACAGCGGCAAAAGAATGGGTCTGAATTTTGA
TAGAGTGAAGTATTGGCTATCAGTTGGTGCTCAACCATCGGACCCTGTCC
AGCGCATTCTTTTCAGGGCAGGGTTGCTACCCCACCTCCTAT
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