FC931767

Overview
NameFC931767
Unique NameFC931767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15503 contig Ccv1_Contig15503:27..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_CARHZ (30S ribosomal protein S16 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rpsP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 35/83 (42.17%), Postives = 54/83 (65.06%), Query Frame = 2 
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G KN PFYRV+ AD+RSPRDG+ ++ +GYY+P+        + +N ++   WL  GAQ ++  + +  +AG+L
Sbjct:    1 MAVKIRLKRMGAKNNPFYRVVVADARSPRDGRVIDEIGYYDPV---KQPAAVVINEEKALDWLKKGAQLTETARALFRKAGVL 80
[Close]
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BURTA (30S ribosomal protein S16 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rpsP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 2 
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 670
            +V IRLAR G K +PFY ++A DSR+ RDG+ +E +G+YNP+     G+ + +  DR+ YW  VGAQ S  V+R++ +A
Sbjct:    1 MVIIRLARGGSKKRPFYNIVATDSRNRRDGRFIERVGFYNPV--ATKGEALRIAQDRLTYWQGVGAQLSPTVERLVKQA 77
[Close]
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BURPS (30S ribosomal protein S16 OS=Burkholderia pseudomallei GN=rpsP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 2 
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 670
            +V IRLAR G K +PFY ++A DSR+ RDG+ +E +G+YNP+     G+ + +  DR+ YW  VGAQ S  V+R++ +A
Sbjct:    1 MVIIRLARGGSKKRPFYNIVATDSRNRRDGRFIERVGFYNPV--ATKGEALRIAQDRLTYWQGVGAQLSPTVERLVKQA 77
[Close]
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BURP6 (30S ribosomal protein S16 OS=Burkholderia pseudomallei (strain 668) GN=rpsP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 2 
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 670
            +V IRLAR G K +PFY ++A DSR+ RDG+ +E +G+YNP+     G+ + +  DR+ YW  VGAQ S  V+R++ +A
Sbjct:    1 MVIIRLARGGSKKRPFYNIVATDSRNRRDGRFIERVGFYNPV--ATKGEALRIAQDRLTYWQGVGAQLSPTVERLVKQA 77
[Close]
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BURP1 (30S ribosomal protein S16 OS=Burkholderia pseudomallei (strain 1710b) GN=rpsP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 2 
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 670
            +V IRLAR G K +PFY ++A DSR+ RDG+ +E +G+YNP+     G+ + +  DR+ YW  VGAQ S  V+R++ +A
Sbjct:    1 MVIIRLARGGSKKRPFYNIVATDSRNRRDGRFIERVGFYNPV--ATKGEALRIAQDRLTYWQGVGAQLSPTVERLVKQA 77
[Close]
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BURP0 (30S ribosomal protein S16 OS=Burkholderia pseudomallei (strain 1106a) GN=rpsP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 2 
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 670
            +V IRLAR G K +PFY ++A DSR+ RDG+ +E +G+YNP+     G+ + +  DR+ YW  VGAQ S  V+R++ +A
Sbjct:    1 MVIIRLARGGSKKRPFYNIVATDSRNRRDGRFIERVGFYNPV--ATKGEALRIAQDRLTYWQGVGAQLSPTVERLVKQA 77
[Close]
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BURMS (30S ribosomal protein S16 OS=Burkholderia mallei (strain SAVP1) GN=rpsP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 2 
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 670
            +V IRLAR G K +PFY ++A DSR+ RDG+ +E +G+YNP+     G+ + +  DR+ YW  VGAQ S  V+R++ +A
Sbjct:    1 MVIIRLARGGSKKRPFYNIVATDSRNRRDGRFIERVGFYNPV--ATKGEALRIAQDRLTYWQGVGAQLSPTVERLVKQA 77
[Close]
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BURMA (30S ribosomal protein S16 OS=Burkholderia mallei GN=rpsP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 2 
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 670
            +V IRLAR G K +PFY ++A DSR+ RDG+ +E +G+YNP+     G+ + +  DR+ YW  VGAQ S  V+R++ +A
Sbjct:    1 MVIIRLARGGSKKRPFYNIVATDSRNRRDGRFIERVGFYNPV--ATKGEALRIAQDRLTYWQGVGAQLSPTVERLVKQA 77
[Close]
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BURM9 (30S ribosomal protein S16 OS=Burkholderia mallei (strain NCTC 10229) GN=rpsP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 2 
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 670
            +V IRLAR G K +PFY ++A DSR+ RDG+ +E +G+YNP+     G+ + +  DR+ YW  VGAQ S  V+R++ +A
Sbjct:    1 MVIIRLARGGSKKRPFYNIVATDSRNRRDGRFIERVGFYNPV--ATKGEALRIAQDRLTYWQGVGAQLSPTVERLVKQA 77
[Close]
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BURM7 (30S ribosomal protein S16 OS=Burkholderia mallei (strain NCTC 10247) GN=rpsP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 2 
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 670
            +V IRLAR G K +PFY ++A DSR+ RDG+ +E +G+YNP+     G+ + +  DR+ YW  VGAQ S  V+R++ +A
Sbjct:    1 MVIIRLARGGSKKRPFYNIVATDSRNRRDGRFIERVGFYNPV--ATKGEALRIAQDRLTYWQGVGAQLSPTVERLVKQA 77
The following BLAST results are available for this feature:
BLAST of FC931767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_CARHZ1.960e-1242.1730S ribosomal protein S16 OS=Carboxydothermus hydr... [more]
RS16_BURTA1.960e-1245.5730S ribosomal protein S16 OS=Burkholderia thailand... [more]
RS16_BURPS1.960e-1245.5730S ribosomal protein S16 OS=Burkholderia pseudoma... [more]
RS16_BURP61.960e-1245.5730S ribosomal protein S16 OS=Burkholderia pseudoma... [more]
RS16_BURP11.960e-1245.5730S ribosomal protein S16 OS=Burkholderia pseudoma... [more]
RS16_BURP01.960e-1245.5730S ribosomal protein S16 OS=Burkholderia pseudoma... [more]
RS16_BURMS1.960e-1245.5730S ribosomal protein S16 OS=Burkholderia mallei (... [more]
RS16_BURMA1.960e-1245.5730S ribosomal protein S16 OS=Burkholderia mallei G... [more]
RS16_BURM91.960e-1245.5730S ribosomal protein S16 OS=Burkholderia mallei (... [more]
RS16_BURM71.960e-1245.5730S ribosomal protein S16 OS=Burkholderia mallei (... [more]

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Properties
Property NameValue
Genbank descriptionC34201A03EF PostHarveN Citrus clementina cDNA clone C34201A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931767 ID=FC931767; Name=FC931767; organism=Citrus clementina; type=EST; length=692bp
AACAAATCAAACAAACCCTGAAGCAGAAAGCCTGGAACTATCTTGCGGTT
TCTCCTCTCTGCCCACTGAAGACAGAAGGTGCCGGTGCCGGCTGCCGCTA
AAAATACCCACGCCACGACACAGCTGCGCCACGTTCTAGCCGCTGATAGC
CTCACGCGTCACCACGACAGGCACGAGCCGCCGACAGCCTCTGAGCCTCA
GCCCAAAACAGTCGCAGTTCTGCCGACGGCCTCACCACACGTCAGCCTCA
TCTCTCCTCTCTCAAATCAGCGTCAGTCCACAACAACCGTACCACAGCAG
CCTCAATCGACTACAGAAACCCACGACCGCAGCTCACGGCAGCAGGCCAG
CAGCCCACGAGTCCACGACAACAACCTCAGCGAACCAGCCTCAGCAAAAA
AAGCGCAGAGGGTATCCAGGAAAAGAAAAGATGGTGGTGAGGATTCGATT
GGCGAGATTCGGATGTAAGAACAAACCTTTCTATCGGGTGATGGCTGCTG
ATAGCCGATCACCCAGAGATGGTAAGCATCTTGAAGTCTTGGGCTATTAC
AACCCCTTGCCAGGTCAAGACAGCGGCAAAAGAATGGGTCTGAATTTTGA
TAGAGTGAAGTATTGGCTATCAGTTGGTGCTCAACCATCGGACCCTGTCC
AGCGCATTCTTTTCAGGGCAGGGTTGCTACCCCACCTCCTAT
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