FC931767

Overview
NameFC931767
Unique NameFC931767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15503 contig Ccv1_Contig15503:27..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BORBZ (30S ribosomal protein S16 OS=Borrelia burgdorferi (strain ZS7) GN=rpsP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V+IRL R G K +P+YRV+  +S SPRDG+ +E LGYY+P+  Q+  K   +  DR+K W+S GA  SD V+ +L +  L
Sbjct:    1 MSVKIRLKRMGAKKRPYYRVVVMNSTSPRDGRAIEELGYYHPVEKQNQIK---IKEDRMKDWISKGAILSDTVKMLLNKNNL 79          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BORBU (30S ribosomal protein S16 OS=Borrelia burgdorferi GN=rpsP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V+IRL R G K +P+YRV+  +S SPRDG+ +E LGYY+P+  Q+  K   +  DR+K W+S GA  SD V+ +L +  L
Sbjct:    1 MSVKIRLKRMGAKKRPYYRVVVMNSTSPRDGRAIEELGYYHPVEKQNQIK---IKEDRMKDWISKGAILSDTVKMLLNKNNL 79          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_ACIBY (30S ribosomal protein S16 OS=Acinetobacter baumannii (strain AYE) GN=rpsP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 34/79 (43.04%), Postives = 54/79 (68.35%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 670
            +V IRLAR G K +PFY+++  DSR+ RDG+ +E +G++NP   Q   +++ L+ DR  +W+S GAQPS+ V  +  +A
Sbjct:    1 MVVIRLARGGAKKRPFYQIVVTDSRNARDGRFIERIGFFNP-TAQGQAEKLRLDADRFAHWVSQGAQPSERVASLAAQA 78          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_ACIBT (30S ribosomal protein S16 OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=rpsP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 34/79 (43.04%), Postives = 54/79 (68.35%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 670
            +V IRLAR G K +PFY+++  DSR+ RDG+ +E +G++NP   Q   +++ L+ DR  +W+S GAQPS+ V  +  +A
Sbjct:    1 MVVIRLARGGAKKRPFYQIVVTDSRNARDGRFIERIGFFNP-TAQGQAEKLRLDADRFAHWVSQGAQPSERVASLAAQA 78          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_ACIBS (30S ribosomal protein S16 OS=Acinetobacter baumannii (strain SDF) GN=rpsP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 34/79 (43.04%), Postives = 54/79 (68.35%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 670
            +V IRLAR G K +PFY+++  DSR+ RDG+ +E +G++NP   Q   +++ L+ DR  +W+S GAQPS+ V  +  +A
Sbjct:    1 MVVIRLARGGAKKRPFYQIVVTDSRNARDGRFIERIGFFNP-TAQGQAEKLRLDADRFAHWVSQGAQPSERVASLAAQA 78          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_ACIBC (30S ribosomal protein S16 OS=Acinetobacter baumannii (strain ACICU) GN=rpsP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 34/79 (43.04%), Postives = 54/79 (68.35%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 670
            +V IRLAR G K +PFY+++  DSR+ RDG+ +E +G++NP   Q   +++ L+ DR  +W+S GAQPS+ V  +  +A
Sbjct:    1 MVVIRLARGGAKKRPFYQIVVTDSRNARDGRFIERIGFFNP-TAQGQAEKLRLDADRFAHWVSQGAQPSERVASLAAQA 78          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_ACIB5 (30S ribosomal protein S16 OS=Acinetobacter baumannii (strain AB0057) GN=rpsP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 34/79 (43.04%), Postives = 54/79 (68.35%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 670
            +V IRLAR G K +PFY+++  DSR+ RDG+ +E +G++NP   Q   +++ L+ DR  +W+S GAQPS+ V  +  +A
Sbjct:    1 MVVIRLARGGAKKRPFYQIVVTDSRNARDGRFIERIGFFNP-TAQGQAEKLRLDADRFAHWVSQGAQPSERVASLAAQA 78          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_ACIB3 (30S ribosomal protein S16 OS=Acinetobacter baumannii (strain AB307-0294) GN=rpsP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 34/79 (43.04%), Postives = 54/79 (68.35%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 670
            +V IRLAR G K +PFY+++  DSR+ RDG+ +E +G++NP   Q   +++ L+ DR  +W+S GAQPS+ V  +  +A
Sbjct:    1 MVVIRLARGGAKKRPFYQIVVTDSRNARDGRFIERIGFFNP-TAQGQAEKLRLDADRFAHWVSQGAQPSERVASLAAQA 78          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_ACIAD (30S ribosomal protein S16 OS=Acinetobacter sp. (strain ADP1) GN=rpsP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 34/79 (43.04%), Postives = 54/79 (68.35%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 670
            +V IRLAR G K +PFY+++  DSR+ RDG+ +E +G++NP   Q   +++ L+ DR  +W+S GAQPS+ V  +  +A
Sbjct:    1 MVVIRLARGGAKKRPFYQIVVTDSRNARDGRFIERIGFFNP-TAQGQAEKLRLDADRFAHWVSQGAQPSERVASLAAQA 78          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_SHEFN (30S ribosomal protein S16 OS=Shewanella frigidimarina (strain NCIMB 400) GN=rpsP PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 35/77 (45.45%), Postives = 55/77 (71.43%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLP-GQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            +V IRLAR G K +PFY ++ ADSR+ RDG+ +E +G++NPL  GQ+   R  L+ DRV++W++ GA  S+ V +++
Sbjct:    1 MVTIRLARGGAKKRPFYNIVVADSRNARDGRFIERVGFFNPLARGQEETLR--LDLDRVEHWVATGAATSERVAKLI 75          
The following BLAST results are available for this feature:
BLAST of FC931767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_BORBZ1.960e-1246.3430S ribosomal protein S16 OS=Borrelia burgdorferi ... [more]
RS16_BORBU1.960e-1246.3430S ribosomal protein S16 OS=Borrelia burgdorferi ... [more]
RS16_ACIBY1.960e-1243.0430S ribosomal protein S16 OS=Acinetobacter baumann... [more]
RS16_ACIBT1.960e-1243.0430S ribosomal protein S16 OS=Acinetobacter baumann... [more]
RS16_ACIBS1.960e-1243.0430S ribosomal protein S16 OS=Acinetobacter baumann... [more]
RS16_ACIBC1.960e-1243.0430S ribosomal protein S16 OS=Acinetobacter baumann... [more]
RS16_ACIB51.960e-1243.0430S ribosomal protein S16 OS=Acinetobacter baumann... [more]
RS16_ACIB31.960e-1243.0430S ribosomal protein S16 OS=Acinetobacter baumann... [more]
RS16_ACIAD1.960e-1243.0430S ribosomal protein S16 OS=Acinetobacter sp. (st... [more]
RS16_SHEFN2.560e-1245.4530S ribosomal protein S16 OS=Shewanella frigidimar... [more]

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Properties
Property NameValue
Genbank descriptionC34201A03EF PostHarveN Citrus clementina cDNA clone C34201A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931767 ID=FC931767; Name=FC931767; organism=Citrus clementina; type=EST; length=692bp
AACAAATCAAACAAACCCTGAAGCAGAAAGCCTGGAACTATCTTGCGGTT
TCTCCTCTCTGCCCACTGAAGACAGAAGGTGCCGGTGCCGGCTGCCGCTA
AAAATACCCACGCCACGACACAGCTGCGCCACGTTCTAGCCGCTGATAGC
CTCACGCGTCACCACGACAGGCACGAGCCGCCGACAGCCTCTGAGCCTCA
GCCCAAAACAGTCGCAGTTCTGCCGACGGCCTCACCACACGTCAGCCTCA
TCTCTCCTCTCTCAAATCAGCGTCAGTCCACAACAACCGTACCACAGCAG
CCTCAATCGACTACAGAAACCCACGACCGCAGCTCACGGCAGCAGGCCAG
CAGCCCACGAGTCCACGACAACAACCTCAGCGAACCAGCCTCAGCAAAAA
AAGCGCAGAGGGTATCCAGGAAAAGAAAAGATGGTGGTGAGGATTCGATT
GGCGAGATTCGGATGTAAGAACAAACCTTTCTATCGGGTGATGGCTGCTG
ATAGCCGATCACCCAGAGATGGTAAGCATCTTGAAGTCTTGGGCTATTAC
AACCCCTTGCCAGGTCAAGACAGCGGCAAAAGAATGGGTCTGAATTTTGA
TAGAGTGAAGTATTGGCTATCAGTTGGTGCTCAACCATCGGACCCTGTCC
AGCGCATTCTTTTCAGGGCAGGGTTGCTACCCCACCTCCTAT
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