FC931767

Overview
NameFC931767
Unique NameFC931767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15503 contig Ccv1_Contig15503:27..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_PSEPW (30S ribosomal protein S16 OS=Pseudomonas putida (strain W619) GN=rpsP PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 34/76 (44.74%), Postives = 53/76 (69.74%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            +V IRLAR G K +PFY +   +SR+ RDG+ +E +G++NP+    +  ++ +N +RV YWLS GAQPS+ V ++L
Sbjct:    1 MVTIRLARGGSKKRPFYHLTVTNSRNARDGRFVERVGFFNPI-AAGAEVKLSVNQERVSYWLSQGAQPSERVAQLL 75          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_PSEPK (30S ribosomal protein S16 OS=Pseudomonas putida (strain KT2440) GN=rpsP PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 670
            +V IRLAR G K +PFY +   +SR+ RDG+ +E +G++NP+    +  ++ +N +RV YWLS GAQPS+ V ++L  A
Sbjct:    1 MVTIRLARGGSKKRPFYHLTVTNSRNARDGRFVERVGFFNPI-AAGAEVKLSVNQERVTYWLSQGAQPSERVAQLLKEA 78          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_PSEPG (30S ribosomal protein S16 OS=Pseudomonas putida (strain GB-1) GN=rpsP PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 670
            +V IRLAR G K +PFY +   +SR+ RDG+ +E +G++NP+    +  ++ +N +RV YWLS GAQPS+ V ++L  A
Sbjct:    1 MVTIRLARGGSKKRPFYHLTVTNSRNARDGRFVERVGFFNPI-AAGAEVKLSVNQERVTYWLSQGAQPSERVAQLLKEA 78          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_PSEP1 (30S ribosomal protein S16 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rpsP PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 670
            +V IRLAR G K +PFY +   +SR+ RDG+ +E +G++NP+    +  ++ +N +RV YWLS GAQPS+ V ++L  A
Sbjct:    1 MVTIRLARGGSKKRPFYHLTVTNSRNARDGRFVERVGFFNPI-AAGAEVKLSVNQERVTYWLSQGAQPSERVAQLLKEA 78          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_DEIRA (30S ribosomal protein S16 OS=Deinococcus radiodurans GN=rpsP PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 33/81 (40.74%), Postives = 55/81 (67.90%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            +V+IRL+RFG  + P YR++ AD R PRDG ++E LG+Y+  P + S   + ++ +R  +W++ GAQP+D  +R+L   G+
Sbjct:    1 MVKIRLSRFGSAHNPHYRIVVADVRRPRDGGYIESLGHYD--PRKTSENFLKIDVERANHWIAQGAQPTDTARRLLRSQGV 79          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_COXBU (30S ribosomal protein S16 OS=Coxiella burnetii GN=rpsP PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLP-GQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            +V IRLAR G K  PFY ++ AD R PRDG+ +E +GYYNP+  GQD   R+ L  +R+ +WL+ GAQ S  V+ ++
Sbjct:    1 MVVIRLARGGSKKNPFYHIVVADRRKPRDGRFIERVGYYNPMARGQDI--RLQLEKERISHWLNQGAQTSLRVKHLI 75          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_COXBR (30S ribosomal protein S16 OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=rpsP PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLP-GQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            +V IRLAR G K  PFY ++ AD R PRDG+ +E +GYYNP+  GQD   R+ L  +R+ +WL+ GAQ S  V+ ++
Sbjct:    1 MVVIRLARGGSKKNPFYHIVVADRRKPRDGRFIERVGYYNPMARGQDI--RLQLEKERISHWLNQGAQTSLRVKHLI 75          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_COXBN (30S ribosomal protein S16 OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rpsP PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLP-GQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            +V IRLAR G K  PFY ++ AD R PRDG+ +E +GYYNP+  GQD   R+ L  +R+ +WL+ GAQ S  V+ ++
Sbjct:    1 MVVIRLARGGSKKNPFYHIVVADRRKPRDGRFIERVGYYNPMARGQDI--RLQLEKERISHWLNQGAQTSLRVKHLI 75          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BURXL (30S ribosomal protein S16 OS=Burkholderia xenovorans (strain LB400) GN=rpsP PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 670
            +V IRLAR G K +PFY ++A DSR+ RDG+ +E +G+YNP+     G+ + +  DR+ YW  VGAQ S  V+R++  A
Sbjct:    1 MVIIRLARGGSKKRPFYNIVATDSRNRRDGRFIERVGFYNPV--ATKGESLRIAQDRLTYWQGVGAQLSPTVERLVKEA 77          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BURPP (30S ribosomal protein S16 OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=rpsP PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 670
            +V IRLAR G K +PFY ++A DSR+ RDG+ +E +G+YNP+     G+ + +  DR+ YW  VGAQ S  V+R++  A
Sbjct:    1 MVIIRLARGGSKKRPFYNIVATDSRNRRDGRFIERVGFYNPV--ATKGESLRIAQDRLTYWQGVGAQLSPTVERLVKEA 77          
The following BLAST results are available for this feature:
BLAST of FC931767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_PSEPW2.560e-1244.7430S ribosomal protein S16 OS=Pseudomonas putida (s... [more]
RS16_PSEPK2.560e-1244.3030S ribosomal protein S16 OS=Pseudomonas putida (s... [more]
RS16_PSEPG2.560e-1244.3030S ribosomal protein S16 OS=Pseudomonas putida (s... [more]
RS16_PSEP12.560e-1244.3030S ribosomal protein S16 OS=Pseudomonas putida (s... [more]
RS16_DEIRA2.560e-1240.7430S ribosomal protein S16 OS=Deinococcus radiodura... [more]
RS16_COXBU2.560e-1248.0530S ribosomal protein S16 OS=Coxiella burnetii GN=... [more]
RS16_COXBR2.560e-1248.0530S ribosomal protein S16 OS=Coxiella burnetii (st... [more]
RS16_COXBN2.560e-1248.0530S ribosomal protein S16 OS=Coxiella burnetii (st... [more]
RS16_BURXL2.560e-1245.5730S ribosomal protein S16 OS=Burkholderia xenovora... [more]
RS16_BURPP2.560e-1245.5730S ribosomal protein S16 OS=Burkholderia phytofir... [more]

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Properties
Property NameValue
Genbank descriptionC34201A03EF PostHarveN Citrus clementina cDNA clone C34201A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931767 ID=FC931767; Name=FC931767; organism=Citrus clementina; type=EST; length=692bp
AACAAATCAAACAAACCCTGAAGCAGAAAGCCTGGAACTATCTTGCGGTT
TCTCCTCTCTGCCCACTGAAGACAGAAGGTGCCGGTGCCGGCTGCCGCTA
AAAATACCCACGCCACGACACAGCTGCGCCACGTTCTAGCCGCTGATAGC
CTCACGCGTCACCACGACAGGCACGAGCCGCCGACAGCCTCTGAGCCTCA
GCCCAAAACAGTCGCAGTTCTGCCGACGGCCTCACCACACGTCAGCCTCA
TCTCTCCTCTCTCAAATCAGCGTCAGTCCACAACAACCGTACCACAGCAG
CCTCAATCGACTACAGAAACCCACGACCGCAGCTCACGGCAGCAGGCCAG
CAGCCCACGAGTCCACGACAACAACCTCAGCGAACCAGCCTCAGCAAAAA
AAGCGCAGAGGGTATCCAGGAAAAGAAAAGATGGTGGTGAGGATTCGATT
GGCGAGATTCGGATGTAAGAACAAACCTTTCTATCGGGTGATGGCTGCTG
ATAGCCGATCACCCAGAGATGGTAAGCATCTTGAAGTCTTGGGCTATTAC
AACCCCTTGCCAGGTCAAGACAGCGGCAAAAGAATGGGTCTGAATTTTGA
TAGAGTGAAGTATTGGCTATCAGTTGGTGCTCAACCATCGGACCCTGTCC
AGCGCATTCTTTTCAGGGCAGGGTTGCTACCCCACCTCCTAT
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