FC931767

Overview
NameFC931767
Unique NameFC931767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_PSEA6 (30S ribosomal protein S16 OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=rpsP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 35/76 (46.05%), Postives = 52/76 (68.42%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            +V IRL R G K +PFY+V+ ADSR  RDG+ +E +G++NP   Q   +R+ L+ DRV++W+  GA  SD V R++
Sbjct:    1 MVTIRLQRGGAKKRPFYQVVVADSRRSRDGRFIENIGFFNP-TAQGQEERLRLDLDRVEHWVGNGAGLSDRVARLV 75          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_HERAR (30S ribosomal protein S16 OS=Herminiimonas arsenicoxydans GN=rpsP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 37/81 (45.68%), Postives = 54/81 (66.67%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPL-PGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAG 673
            +V IRLAR G K +PF+ ++A DSR+ RDG+ +E +G+YNP+  G +   R+    DR+ YW  VGAQ S  V R++ +AG
Sbjct:    1 MVVIRLARGGAKKRPFFNIVATDSRNRRDGRFIERIGFYNPVASGAEESVRIAQ--DRLAYWQGVGAQLSPTVARLVAQAG 79          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_EDWI9 (30S ribosomal protein S16 OS=Edwardsiella ictaluri (strain 93-146) GN=rpsP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 35/79 (44.30%), Postives = 53/79 (67.09%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 670
            +V IRLAR G K +PFY+V+  DSR+ RDG+ +E +G++NP+    S + + L+ DRV +W+S GA  SD V  ++  A
Sbjct:    1 MVTIRLARGGAKKRPFYQVVVTDSRNARDGRFIERVGFFNPI-ATGSAEGLRLDLDRVSHWVSQGATVSDRVAALIKEA 78          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BIFLI (30S ribosomal protein S16 OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rpsP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            M  +IRL R G K   FYRV+  DSR  RDGK +E +G YNP         + +  DR +YWL VGAQPS+PV ++L
Sbjct:    1 MATKIRLKRQGKKFYAFYRVVVVDSRKKRDGKVIEEIGIYNP---NTQPSTIQIKSDRAQYWLGVGAQPSEPVFKLL 74          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_ANASK (30S ribosomal protein S16 OS=Anaeromyxobacter sp. (strain K) GN=rpsP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 37/80 (46.25%), Postives = 51/80 (63.75%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 670
            M V +RL+R G    PFY V+A DSR+ RDGK+LE +G Y+P    +   R+ L  +R+++WL  GA+PS  V  IL RA
Sbjct:    1 MAVVLRLSRAGTHKAPFYHVVATDSRNARDGKYLEDVGIYDPTKRPE---RIELKVERIEHWLKAGAKPSQTVAMILKRA 77          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_ANADF (30S ribosomal protein S16 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=rpsP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 37/80 (46.25%), Postives = 51/80 (63.75%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 670
            M V +RL+R G    PFY V+A DSR+ RDGK++E +G Y+P       +R+ L  +R+++WL VGA PS  V  IL RA
Sbjct:    1 MAVVLRLSRAGTHKAPFYHVVATDSRNARDGKYIEDVGIYDP---TQQPERIELKAERIEHWLKVGATPSQTVAMILKRA 77          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_ANADE (30S ribosomal protein S16 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=rpsP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 37/80 (46.25%), Postives = 51/80 (63.75%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 670
            M V +RL+R G    PFY V+A DSR+ RDGK+LE +G Y+P    +   R+ L  +R+++WL  GA+PS  V  IL RA
Sbjct:    1 MAVVLRLSRAGTHKAPFYHVVATDSRNARDGKYLEDVGIYDPTKRPE---RIELKVERIEHWLKAGAKPSQTVAMILKRA 77          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_ANAD2 (30S ribosomal protein S16 OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=rpsP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 37/80 (46.25%), Postives = 51/80 (63.75%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 670
            M V +RL+R G    PFY V+A DSR+ RDGK+LE +G Y+P    +   R+ L  +R+++WL  GA+PS  V  IL RA
Sbjct:    1 MAVVLRLSRAGTHKAPFYHVVATDSRNARDGKYLEDVGIYDPTKRPE---RIELKVERIEHWLKAGAKPSQTVAMILKRA 77          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_ACIAC (30S ribosomal protein S16 OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=rpsP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 670
            +V IRL+R G K +PF+ ++ AD R  RDG+ +E LG+YNP   ++  + + +  DR+ YW SVGAQ SD V+R++ +A
Sbjct:    1 MVVIRLSRGGSKGRPFFNIVVADKRVRRDGRFIERLGFYNP-TAKEGEEGLRIAQDRLTYWKSVGAQVSDTVERLIKQA 78          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_XANCP (30S ribosomal protein S16 OS=Xanthomonas campestris pv. campestris GN=rpsP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 34/75 (45.33%), Postives = 51/75 (68.00%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRI 658
            +V+IRL R G K +PFY ++  D RS RDG+++E LGYYNP+  Q +  R+ L+  RV +W+  GAQ +D V+ +
Sbjct:    1 MVKIRLTRGGAKKRPFYHIIVTDVRSARDGRNIERLGYYNPV-AQGAEPRVVLDVARVDHWVGQGAQLTDKVRNL 74          
The following BLAST results are available for this feature:
BLAST of FC931767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_PSEA64.367e-1246.0530S ribosomal protein S16 OS=Pseudoalteromonas atl... [more]
RS16_HERAR4.367e-1245.6830S ribosomal protein S16 OS=Herminiimonas arsenic... [more]
RS16_EDWI94.367e-1244.3030S ribosomal protein S16 OS=Edwardsiella ictaluri... [more]
RS16_BIFLI4.367e-1248.0530S ribosomal protein S16 OS=Bifidobacterium longu... [more]
RS16_ANASK4.367e-1246.2530S ribosomal protein S16 OS=Anaeromyxobacter sp. ... [more]
RS16_ANADF4.367e-1246.2530S ribosomal protein S16 OS=Anaeromyxobacter sp. ... [more]
RS16_ANADE4.367e-1246.2530S ribosomal protein S16 OS=Anaeromyxobacter deha... [more]
RS16_ANAD24.367e-1246.2530S ribosomal protein S16 OS=Anaeromyxobacter deha... [more]
RS16_ACIAC4.367e-1244.3030S ribosomal protein S16 OS=Acidovorax avenae sub... [more]
RS16_XANCP5.703e-1245.3330S ribosomal protein S16 OS=Xanthomonas campestri... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34201A03EF PostHarveN Citrus clementina cDNA clone C34201A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931767 ID=FC931767; Name=FC931767; organism=Citrus clementina; type=EST; length=692bp
AACAAATCAAACAAACCCTGAAGCAGAAAGCCTGGAACTATCTTGCGGTT
TCTCCTCTCTGCCCACTGAAGACAGAAGGTGCCGGTGCCGGCTGCCGCTA
AAAATACCCACGCCACGACACAGCTGCGCCACGTTCTAGCCGCTGATAGC
CTCACGCGTCACCACGACAGGCACGAGCCGCCGACAGCCTCTGAGCCTCA
GCCCAAAACAGTCGCAGTTCTGCCGACGGCCTCACCACACGTCAGCCTCA
TCTCTCCTCTCTCAAATCAGCGTCAGTCCACAACAACCGTACCACAGCAG
CCTCAATCGACTACAGAAACCCACGACCGCAGCTCACGGCAGCAGGCCAG
CAGCCCACGAGTCCACGACAACAACCTCAGCGAACCAGCCTCAGCAAAAA
AAGCGCAGAGGGTATCCAGGAAAAGAAAAGATGGTGGTGAGGATTCGATT
GGCGAGATTCGGATGTAAGAACAAACCTTTCTATCGGGTGATGGCTGCTG
ATAGCCGATCACCCAGAGATGGTAAGCATCTTGAAGTCTTGGGCTATTAC
AACCCCTTGCCAGGTCAAGACAGCGGCAAAAGAATGGGTCTGAATTTTGA
TAGAGTGAAGTATTGGCTATCAGTTGGTGCTCAACCATCGGACCCTGTCC
AGCGCATTCTTTTCAGGGCAGGGTTGCTACCCCACCTCCTAT
back to top