FC931767

Overview
NameFC931767
Unique NameFC931767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15503 contig Ccv1_Contig15503:27..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_XANCB (30S ribosomal protein S16 OS=Xanthomonas campestris pv. campestris (strain B100) GN=rpsP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 34/75 (45.33%), Postives = 51/75 (68.00%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRI 658
            +V+IRL R G K +PFY ++  D RS RDG+++E LGYYNP+  Q +  R+ L+  RV +W+  GAQ +D V+ +
Sbjct:    1 MVKIRLTRGGAKKRPFYHIIVTDVRSARDGRNIERLGYYNPV-AQGAEPRVVLDVARVDHWVGQGAQLTDKVRNL 74          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_XANC8 (30S ribosomal protein S16 OS=Xanthomonas campestris pv. campestris (strain 8004) GN=rpsP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 34/75 (45.33%), Postives = 51/75 (68.00%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRI 658
            +V+IRL R G K +PFY ++  D RS RDG+++E LGYYNP+  Q +  R+ L+  RV +W+  GAQ +D V+ +
Sbjct:    1 MVKIRLTRGGAKKRPFYHIIVTDVRSARDGRNIERLGYYNPV-AQGAEPRVVLDVARVDHWVGQGAQLTDKVRNL 74          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_SHEPA (30S ribosomal protein S16 OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rpsP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 34/77 (44.16%), Postives = 55/77 (71.43%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLP-GQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            +V IRLAR G K +PFY ++ ADSR+ RDG+ +E +G++NP+  GQ+   R  L+ DRV++W++ GA  +D V +++
Sbjct:    1 MVTIRLARGGAKKRPFYNIVVADSRNARDGRFIERVGFFNPVARGQEEALR--LDLDRVEHWVANGAATTDRVAKLI 75          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_SHEHH (30S ribosomal protein S16 OS=Shewanella halifaxensis (strain HAW-EB4) GN=rpsP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 34/77 (44.16%), Postives = 55/77 (71.43%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLP-GQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            +V IRLAR G K +PFY ++ ADSR+ RDG+ +E +G++NP+  GQ+   R  L+ DRV++W++ GA  +D V +++
Sbjct:    1 MVTIRLARGGAKKRPFYNIVVADSRNARDGRFIERVGFFNPVARGQEEALR--LDLDRVEHWVANGAATTDRVAKLI 75          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RHOFD (30S ribosomal protein S16 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=rpsP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 670
            +V IRLAR G K +PF+ ++ AD R+ RDG+ +E LG+YNP+   +  + + +  DR+ YW SVGAQ S  V+R++ +A
Sbjct:    1 MVVIRLARGGAKARPFFNIVVADKRTRRDGRFIERLGFYNPIATANE-ESIRIAQDRLTYWRSVGAQASPTVERLISQA 78          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_PECCP (30S ribosomal protein S16 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rpsP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 32/76 (42.11%), Postives = 52/76 (68.42%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            +V IRLAR G K +PFY+V+  DSR+ RDG+ +E +G++NP+      + + L+ DR+++WL +GA  SD V  ++
Sbjct:    1 MVTIRLARGGAKKRPFYQVVVTDSRNARDGRFIERVGFFNPI-AAGQAEALRLDLDRIEHWLGLGATVSDRVSSLI 75          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_MARMS (30S ribosomal protein S16 OS=Marinomonas sp. (strain MWYL1) GN=rpsP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 35/77 (45.45%), Postives = 55/77 (71.43%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLP-GQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            +V IRL+R G K +PFY +  ADSR  RDG+++E LG++NP+  GQ+  +R+ ++ DRV +W+S GAQ SD   +++
Sbjct:    1 MVTIRLSRGGSKKRPFYHLNVADSRRARDGRYIERLGFFNPVARGQE--ERLRIDLDRVNHWVSQGAQLSDRAAQLV 75          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_IDILO (30S ribosomal protein S16 OS=Idiomarina loihiensis GN=rpsP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 33/77 (42.86%), Postives = 58/77 (75.32%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLP-GQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            +V IRL R G K +PFY+++ ADSR+ RDG+ +E +G++NP+  GQ+  +++ ++ DR+++W+S GAQ SD V +++
Sbjct:    1 MVTIRLQRGGAKKRPFYQMVVADSRNARDGRFIEKVGFFNPVARGQE--EKLRVDVDRIEHWVSKGAQLSDRVAKLV 75          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_HELPH (30S ribosomal protein S16 OS=Helicobacter pylori (strain HPAG1) GN=rpsP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 2
Query:  443 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 670
            IRL R G K KPFYRV+  DSR  RDG  +E +GYYNPL      K + ++ +R+ YW SVGA+ S+ V+++  +A
Sbjct:    4 IRLTRIGRKKKPFYRVVVTDSRKRRDGGWIESIGYYNPL---SEPKDIKIDKERLNYWKSVGAKMSERVEKLSQKA 76          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_ERWCT (30S ribosomal protein S16 OS=Erwinia carotovora subsp. atroseptica GN=rpsP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 32/76 (42.11%), Postives = 52/76 (68.42%), Query Frame = 2
Query:  434 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 661
            +V IRLAR G K +PFY+V+  DSR+ RDG+ +E +G++NP+      + + L+ DR+++WL +GA  SD V  ++
Sbjct:    1 MVTIRLARGGAKKRPFYQVVVTDSRNARDGRFIERVGFFNPI-ATGQAEALRLDLDRIEHWLGLGATVSDRVSSLI 75          
The following BLAST results are available for this feature:
BLAST of FC931767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_XANCB5.703e-1245.3330S ribosomal protein S16 OS=Xanthomonas campestri... [more]
RS16_XANC85.703e-1245.3330S ribosomal protein S16 OS=Xanthomonas campestri... [more]
RS16_SHEPA5.703e-1244.1630S ribosomal protein S16 OS=Shewanella pealeana (... [more]
RS16_SHEHH5.703e-1244.1630S ribosomal protein S16 OS=Shewanella halifaxens... [more]
RS16_RHOFD5.703e-1244.3030S ribosomal protein S16 OS=Rhodoferax ferrireduc... [more]
RS16_PECCP5.703e-1242.1130S ribosomal protein S16 OS=Pectobacterium caroto... [more]
RS16_MARMS5.703e-1245.4530S ribosomal protein S16 OS=Marinomonas sp. (stra... [more]
RS16_IDILO5.703e-1242.8630S ribosomal protein S16 OS=Idiomarina loihiensis... [more]
RS16_HELPH5.703e-1247.3730S ribosomal protein S16 OS=Helicobacter pylori (... [more]
RS16_ERWCT5.703e-1242.1130S ribosomal protein S16 OS=Erwinia carotovora su... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34201A03EF PostHarveN Citrus clementina cDNA clone C34201A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931767 ID=FC931767; Name=FC931767; organism=Citrus clementina; type=EST; length=692bp
AACAAATCAAACAAACCCTGAAGCAGAAAGCCTGGAACTATCTTGCGGTT
TCTCCTCTCTGCCCACTGAAGACAGAAGGTGCCGGTGCCGGCTGCCGCTA
AAAATACCCACGCCACGACACAGCTGCGCCACGTTCTAGCCGCTGATAGC
CTCACGCGTCACCACGACAGGCACGAGCCGCCGACAGCCTCTGAGCCTCA
GCCCAAAACAGTCGCAGTTCTGCCGACGGCCTCACCACACGTCAGCCTCA
TCTCTCCTCTCTCAAATCAGCGTCAGTCCACAACAACCGTACCACAGCAG
CCTCAATCGACTACAGAAACCCACGACCGCAGCTCACGGCAGCAGGCCAG
CAGCCCACGAGTCCACGACAACAACCTCAGCGAACCAGCCTCAGCAAAAA
AAGCGCAGAGGGTATCCAGGAAAAGAAAAGATGGTGGTGAGGATTCGATT
GGCGAGATTCGGATGTAAGAACAAACCTTTCTATCGGGTGATGGCTGCTG
ATAGCCGATCACCCAGAGATGGTAAGCATCTTGAAGTCTTGGGCTATTAC
AACCCCTTGCCAGGTCAAGACAGCGGCAAAAGAATGGGTCTGAATTTTGA
TAGAGTGAAGTATTGGCTATCAGTTGGTGCTCAACCATCGGACCCTGTCC
AGCGCATTCTTTTCAGGGCAGGGTTGCTACCCCACCTCCTAT
back to top