FC931767

Overview
NameFC931767
Unique NameFC931767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15503 contig Ccv1_Contig15503:27..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_BRAJA (30S ribosomal protein S16 OS=Bradyrhizobium japonicum GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.643e-17
Identity = 44/82 (53.66%), Postives = 58/82 (70.73%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V IRLAR G K +P Y V+ ADSR PRDG+ +E LGY+NPL  +D+  R+ L+ ++VK W++ GAQPSD V R L  AG+
Sbjct:    1 MSVVIRLARAGTKKRPVYHVVVADSRFPRDGRFIERLGYFNPLLPKDNEARLKLDMEKVKAWVAKGAQPSDRVSRFLDAAGV 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_WOLPP (30S ribosomal protein S16 OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.452e-17
Identity = 39/73 (53.42%), Postives = 57/73 (78.08%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPV 649
            M V+IRLARFG K +PFYR++ ADSR+PRDG+ +E +G Y+P+  +D+  R+ +  DR+K+WLSVGAQ ++ V
Sbjct:    1 MAVKIRLARFGAKKRPFYRIVVADSRAPRDGRFIERIGQYDPMLPKDNKNRVVVKADRLKHWLSVGAQATERV 73          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRSV (30S ribosomal protein S16 OS=Streptococcus sanguinis (strain SK36) GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.452e-17
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSRSPRDG+ +E +G YNPL  ++   ++ L  DR+  WL  GAQPSD V+ IL + G+L
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRSPRDGRFIETVGTYNPLVAEN---QVTLKEDRILEWLGNGAQPSDTVRNILSKEGVL 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_RICAH (30S ribosomal protein S16 OS=Rickettsia akari (strain Hartford) GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.452e-17
Identity = 40/82 (48.78%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 676
            M V+IRLAR G K +PFYRV+ A++ +PRDG  LE +G YNP+   D+ +R+ L  DR++YWL  GA+P++ V + + +AGL
Sbjct:    1 MAVKIRLARGGAKKRPFYRVVIANAAAPRDGDFLEKVGTYNPMLASDNSERVVLKKDRIEYWLGTGAKPTERVAKFIEQAGL 82          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_METSB (30S ribosomal protein S16 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.452e-17
Identity = 41/83 (49.40%), Postives = 61/83 (73.49%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M ++IRL+R G K +PFYRV+ ADSR PRDG+ +E LG ++PL  +DS +R+ L+ ++ K W++ GAQP+D V R+L   G+L
Sbjct:    1 MPLKIRLSRGGAKKRPFYRVVVADSRMPRDGRFIERLGVFDPLKAKDSAERVVLDAEKAKEWIAKGAQPTDRVARLLDGLGVL 83          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_LACLA (30S ribosomal protein S16 OS=Lactococcus lactis subsp. lactis GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.452e-17
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSR+PRDGK +E +G YNPL  ++   ++ L  +RV  WLS GAQPSD V+ +L +AG++
Sbjct:    1 MSVKIRLTRMGSKKKPFYRINVADSRAPRDGKFIETVGTYNPLVTEE---QVTLKEERVLEWLSKGAQPSDTVRNLLSKAGVM 80          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_LACDB (30S ribosomal protein S16 OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.452e-17
Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPHL 688
            M V+IR+ R G K KPFYR++ ADSR+PRDG+ +E +GYYNP+      K + L+ D++  WL  GAQPSD V+  L  AGL+  L
Sbjct:    1 MSVKIRMRRMGAKRKPFYRIVVADSRAPRDGRFIEEVGYYNPV---SQPKELKLDEDKIFEWLKKGAQPSDTVRSFLSSAGLMAKL 83          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_LACDA (30S ribosomal protein S16 OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.452e-17
Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPHL 688
            M V+IR+ R G K KPFYR++ ADSR+PRDG+ +E +GYYNP+      K + L+ D++  WL  GAQPSD V+  L  AGL+  L
Sbjct:    1 MSVKIRMRRMGAKRKPFYRIVVADSRAPRDGRFIEEVGYYNPV---SQPKELKLDEDKIFEWLKKGAQPSDTVRSFLSSAGLMAKL 83          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_WOLTR (30S ribosomal protein S16 OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.508e-17
Identity = 39/73 (53.42%), Postives = 56/73 (76.71%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPV 649
            M V+IRLARFG K +PFYR++ ADSR+PRDG+ +E +G Y+P+  +D+   + +  DR+KYWL+VGAQ S+ V
Sbjct:    1 MAVKIRLARFGAKKRPFYRIVVADSRAPRDGRFIERIGQYDPMLSKDNKNCVVVKADRLKYWLNVGAQASERV 73          
BLAST of FC931767 vs. ExPASy Swiss-Prot
Match: RS16_STRMU (30S ribosomal protein S16 OS=Streptococcus mutans GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.508e-17
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 2
Query:  431 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 679
            M V+IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ L  DR+  WL  GAQPSD V+ IL +AG++
Sbjct:    1 MAVKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVTEN---QVTLKEDRILEWLGNGAQPSDTVRNILSKAGIM 80          
The following BLAST results are available for this feature:
BLAST of FC931767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_BRAJA2.643e-1753.6630S ribosomal protein S16 OS=Bradyrhizobium japoni... [more]
RS16_WOLPP3.452e-1753.4230S ribosomal protein S16 OS=Wolbachia pipientis s... [more]
RS16_STRSV3.452e-1753.0130S ribosomal protein S16 OS=Streptococcus sanguin... [more]
RS16_RICAH3.452e-1748.7830S ribosomal protein S16 OS=Rickettsia akari (str... [more]
RS16_METSB3.452e-1749.4030S ribosomal protein S16 OS=Methylocella silvestr... [more]
RS16_LACLA3.452e-1753.0130S ribosomal protein S16 OS=Lactococcus lactis su... [more]
RS16_LACDB3.452e-1750.0030S ribosomal protein S16 OS=Lactobacillus delbrue... [more]
RS16_LACDA3.452e-1750.0030S ribosomal protein S16 OS=Lactobacillus delbrue... [more]
RS16_WOLTR4.508e-1753.4230S ribosomal protein S16 OS=Wolbachia sp. subsp. ... [more]
RS16_STRMU4.508e-1751.8130S ribosomal protein S16 OS=Streptococcus mutans ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34201A03EF PostHarveN Citrus clementina cDNA clone C34201A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931767 ID=FC931767; Name=FC931767; organism=Citrus clementina; type=EST; length=692bp
AACAAATCAAACAAACCCTGAAGCAGAAAGCCTGGAACTATCTTGCGGTT
TCTCCTCTCTGCCCACTGAAGACAGAAGGTGCCGGTGCCGGCTGCCGCTA
AAAATACCCACGCCACGACACAGCTGCGCCACGTTCTAGCCGCTGATAGC
CTCACGCGTCACCACGACAGGCACGAGCCGCCGACAGCCTCTGAGCCTCA
GCCCAAAACAGTCGCAGTTCTGCCGACGGCCTCACCACACGTCAGCCTCA
TCTCTCCTCTCTCAAATCAGCGTCAGTCCACAACAACCGTACCACAGCAG
CCTCAATCGACTACAGAAACCCACGACCGCAGCTCACGGCAGCAGGCCAG
CAGCCCACGAGTCCACGACAACAACCTCAGCGAACCAGCCTCAGCAAAAA
AAGCGCAGAGGGTATCCAGGAAAAGAAAAGATGGTGGTGAGGATTCGATT
GGCGAGATTCGGATGTAAGAACAAACCTTTCTATCGGGTGATGGCTGCTG
ATAGCCGATCACCCAGAGATGGTAAGCATCTTGAAGTCTTGGGCTATTAC
AACCCCTTGCCAGGTCAAGACAGCGGCAAAAGAATGGGTCTGAATTTTGA
TAGAGTGAAGTATTGGCTATCAGTTGGTGCTCAACCATCGGACCCTGTCC
AGCGCATTCTTTTCAGGGCAGGGTTGCTACCCCACCTCCTAT
back to top