FC931789

Overview
NameFC931789
Unique NameFC931789
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12223 contig Ccv1_Contig12223:20..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931789 vs. ExPASy Swiss-Prot
Match: YVN1_AZOVI (UPF0076 protein in vnfA 5'region OS=Azotobacter vinelandii PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.039e-20
Identity = 51/124 (41.13%), Postives = 76/124 (61.29%), Query Frame = 2
Query:  239 KEAVVTNKAPAALGPYSQAIKANNLFFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIVAL 610
            K  + T+KAPAA+G YSQAI+A +  ++SG + L P T + V    E QT +V +N+  +++A+G  ++ +VK  I L DL  F   NE   +YF  P PARA    A+LP  A+VE++ I+ L
Sbjct:    3 KSVINTDKAPAAIGTYSQAIRAGDTVYLSGQIPLDPGTMELVEGDFEAQTVRVFENLKAVVEAAGGSFADIVKLNIFLTDLAHFANGNECMGRYFAQPYPARAAIACASLPRGAQVEMDGILVL 126          
BLAST of FC931789 vs. ExPASy Swiss-Prot
Match: TDCF_SHIFL (Protein tdcF OS=Shigella flexneri GN=tdcF PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20
Identity = 46/125 (36.80%), Postives = 77/125 (61.60%), Query Frame = 2
Query:  236 LKEAVVTNKAPAALGPYSQAIKANNLFFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYF---PSPAPARATYQVAALPLDARVEIECI 601
            +K+ + T +AP A+GPY Q +   ++ F SG + + P+TG+  +D ++DQ    L+N+  I+ A+G     ++K T+ + DL DF T+NE+Y ++F    +  P R+  QVA LP D ++EIE I
Sbjct:    1 MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPAD-VQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATYPTRSCVQVARLPKDVKLEIEAI 124          
BLAST of FC931789 vs. ExPASy Swiss-Prot
Match: TDCF_ECOLI (Protein tdcF OS=Escherichia coli (strain K12) GN=tdcF PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20
Identity = 46/125 (36.80%), Postives = 77/125 (61.60%), Query Frame = 2
Query:  236 LKEAVVTNKAPAALGPYSQAIKANNLFFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYF---PSPAPARATYQVAALPLDARVEIECI 601
            +K+ + T +AP A+GPY Q +   ++ F SG + + P+TG+  +D ++DQ    L+N+  I+ A+G     ++K T+ + DL DF T+NE+Y ++F    +  P R+  QVA LP D ++EIE I
Sbjct:    1 MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPAD-VQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATYPTRSCVQVARLPKDVKLEIEAI 124          
BLAST of FC931789 vs. ExPASy Swiss-Prot
Match: TDCF_ECOL6 (Protein tdcF OS=Escherichia coli O6 GN=tdcF PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20
Identity = 46/125 (36.80%), Postives = 77/125 (61.60%), Query Frame = 2
Query:  236 LKEAVVTNKAPAALGPYSQAIKANNLFFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYF---PSPAPARATYQVAALPLDARVEIECI 601
            +K+ + T +AP A+GPY Q +   ++ F SG + + P+TG+  +D ++DQ    L+N+  I+ A+G     ++K T+ + DL DF T+NE+Y ++F    +  P R+  QVA LP D ++EIE I
Sbjct:    1 MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPAD-VQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATYPTRSCVQVARLPKDVKLEIEAI 124          
BLAST of FC931789 vs. ExPASy Swiss-Prot
Match: MMF1_YEAST (Protein MMF1, mitochondrial OS=Saccharomyces cerevisiae GN=MMF1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19
Identity = 51/123 (41.46%), Postives = 74/123 (60.16%), Query Frame = 2
Query:  248 VVTNKAPAALGPYSQAIKANNLFFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIVALPN 616
            V T  AP A   YSQA+KANN  +VSG +   P+  K V  +I ++ EQV +N+  IL  S +   ++VK  + LAD+K+F   N +YAK+F +  PAR+   VA+LPL+  +E+E I    N
Sbjct:   24 VSTKLAPPAAASYSQAMKANNFVYVSGQIPYTPDN-KPVQGSISEKAEQVFQNVKNILAESNSSLDNIVKVNVFLADMKNFAEFNSVYAKHFHTHKPARSCVGVASLPLNVDLEMEVIAVEKN 145          
BLAST of FC931789 vs. ExPASy Swiss-Prot
Match: MMF1_SCHPO (Protein mmf1, mitochondrial OS=Schizosaccharomyces pombe GN=mmf1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19
Identity = 47/114 (41.23%), Postives = 70/114 (61.40%), Query Frame = 2
Query:  269 AALGPYSQAIKANNLFFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLD---ARVEIECI 601
            ++ GPY+QAIKAN + + SG + +    GK +  T+ DQT Q L N+ E+L  +G+  + +VK  I LAD+ DF  VN++Y +  P P PAR+   V  +PL     ++EIECI
Sbjct:   48 SSAGPYNQAIKANGVIYCSGQIPVA--NGKVIEGTVGDQTRQCLLNLQEVLTEAGSSLNKIVKVNIFLADMDDFAAVNKVYTEVLPDPKPARSCVAVKTVPLSTQGVKIEIECI 159          
BLAST of FC931789 vs. ExPASy Swiss-Prot
Match: MMF2_SCHPO (Protein mmf2, mitochondrial OS=Schizosaccharomyces pombe GN=mmf2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.023e-19
Identity = 45/113 (39.82%), Postives = 68/113 (60.18%), Query Frame = 2
Query:  278 GPYSQAIKANNLFFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDA---RVEIECIVA 607
            GPY+QA+K+  L F SG   +  + G FV  TI++QT   ++N+ E+L+ +G+    +VK  I L D+ DF  +NE+Y +  P P PAR T     +PL +   ++EIECI A
Sbjct:   15 GPYNQAVKSGGLIFCSGQAAV--KDGNFVPGTIQEQTRLTIENLAEVLRVAGSSLEKLVKVNIFLTDIDDFAAMNEVYKEMLPDPMPARTTVAAGKIPLSSKGGKIEIECIAA 125          
BLAST of FC931789 vs. ExPASy Swiss-Prot
Match: YJGF_SHIFL (UPF0076 protein yjgF OS=Shigella flexneri GN=yjgF PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18
Identity = 48/125 (38.40%), Postives = 73/125 (58.40%), Query Frame = 2
Query:  236 LKEAVVTNKAPAALGPYSQAIKANNLFFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFP---SPAPARATYQVAALPLDARVEIECI 601
            + + + T  APAA+GPY Q +   N+   SG + + P+TG+  +D +  Q  Q L N+  I++A+G     +VKTT+ + DL DF TVN  Y  +F    +  PAR+  +VA LP D ++EIE I
Sbjct:    1 MSKTIATENAPAAIGPYVQGVDLGNMIITSGQIPVNPKTGEVPAD-VAAQARQSLDNVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATFPARSCVEVARLPKDVKIEIEAI 124          
BLAST of FC931789 vs. ExPASy Swiss-Prot
Match: YJGF_ECOLI (UPF0076 protein yjgF OS=Escherichia coli (strain K12) GN=yjgF PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18
Identity = 48/125 (38.40%), Postives = 73/125 (58.40%), Query Frame = 2
Query:  236 LKEAVVTNKAPAALGPYSQAIKANNLFFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFP---SPAPARATYQVAALPLDARVEIECI 601
            + + + T  APAA+GPY Q +   N+   SG + + P+TG+  +D +  Q  Q L N+  I++A+G     +VKTT+ + DL DF TVN  Y  +F    +  PAR+  +VA LP D ++EIE I
Sbjct:    1 MSKTIATENAPAAIGPYVQGVDLGNMIITSGQIPVNPKTGEVPAD-VAAQARQSLDNVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATFPARSCVEVARLPKDVKIEIEAI 124          
BLAST of FC931789 vs. ExPASy Swiss-Prot
Match: YJGF_ECOL6 (UPF0076 protein yjgF OS=Escherichia coli O6 GN=yjgF PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18
Identity = 48/125 (38.40%), Postives = 73/125 (58.40%), Query Frame = 2
Query:  236 LKEAVVTNKAPAALGPYSQAIKANNLFFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFP---SPAPARATYQVAALPLDARVEIECI 601
            + + + T  APAA+GPY Q +   N+   SG + + P+TG+  +D +  Q  Q L N+  I++A+G     +VKTT+ + DL DF TVN  Y  +F    +  PAR+  +VA LP D ++EIE I
Sbjct:    1 MSKTIATENAPAAIGPYVQGVDLGNMIITSGQIPVNPKTGEVPAD-VAAQARQSLDNVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATFPARSCVEVARLPKDVKIEIEAI 124          
The following BLAST results are available for this feature:
BLAST of FC931789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
YVN1_AZOVI2.039e-2041.13UPF0076 protein in vnfA 5'region OS=Azotobacter vi... [more]
TDCF_SHIFL5.933e-2036.80Protein tdcF OS=Shigella flexneri GN=tdcF PE=3 SV=... [more]
TDCF_ECOLI5.933e-2036.80Protein tdcF OS=Escherichia coli (strain K12) GN=t... [more]
TDCF_ECOL65.933e-2036.80Protein tdcF OS=Escherichia coli O6 GN=tdcF PE=3 S... [more]
MMF1_YEAST2.945e-1941.46Protein MMF1, mitochondrial OS=Saccharomyces cerev... [more]
MMF1_SCHPO2.945e-1941.23Protein mmf1, mitochondrial OS=Schizosaccharomyces... [more]
MMF2_SCHPO5.023e-1939.82Protein mmf2, mitochondrial OS=Schizosaccharomyces... [more]
YJGF_SHIFL1.119e-1838.40UPF0076 protein yjgF OS=Shigella flexneri GN=yjgF ... [more]
YJGF_ECOLI1.119e-1838.40UPF0076 protein yjgF OS=Escherichia coli (strain K... [more]
YJGF_ECOL61.119e-1838.40UPF0076 protein yjgF OS=Escherichia coli O6 GN=yjg... [more]

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Properties
Property NameValue
Genbank descriptionC34201C01EF PostHarveN Citrus clementina cDNA clone C34201C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931789 ID=FC931789; Name=FC931789; organism=Citrus clementina; type=EST; length=706bp
GACTTCGCTCGAGGGAAACTGAGAGAGCAACAGCGACAAAGACGAAGACA
TGGCGTGGTGTTCATTACGGTCGTTGAATGTCCCAACCATCGACATGGGC
GCACTGCGCACCCGCTCTCGCTTAGCCGCCGTCGGAATCGGCTGCGCCTC
GGTCGCCGGGTCCAGCGTCTGGCGCTCTTCTTGCAAGAAACACTCCACTC
CCTTTGCTTGCTTATCCACTTCCGCCGTTTCTAATTTGAAGGAGGCTGTT
GTGACTAACAAGGCTCCAGCAGCATTGGGACCTTATTCTCAGGCCATCAA
AGCAAATAACCTCTTTTTTGTCTCTGGGGTTCTTGGCTTAGTTCCAGAGA
CTGGGAAATTTGTCTCAGATACTATAGAGGACCAGACAGAGCAGGTTCTT
AAAAATATTGGGGAAATACTGAAAGCTAGCGGCGCTGACTATTCCTCTGT
GGTTAAGACAACAATTTTGTTGGCAGACTTGAAAGACTTCAAGACAGTGA
ATGAGATCTATGCTAAATACTTTCCTTCACCAGCTCCAGCACGTGCAACA
TATCAAGTAGCAGCACTGCCGTTGGATGCCAGGGTTGAGATTGAATGCAT
TGTAGCCCTTCCCAATTCTTGATTGGGGTGAAATTCTTCCAGGATAATCG
AATAGAGGGGAAGAAAGCACACCTTTGAGGACAGGATTTTGGAGGCATTT
TCTCAT
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