FC931942

Overview
NameFC931942
Unique NameFC931942
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931942 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.327e-12
Identity = 41/107 (38.32%), Postives = 59/107 (55.14%), Query Frame = 3
Query:  105 PITFPASIPPTKSP---ESLCRVGSGASSVILDSEAGVEAESRKLPSSKYKGVVPQPNGRWGAQIYE--KHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQ 410
            P  F A+  P  S      +  VGS  +   ++S    E  S++   ++Y+G+  +P G+W A+I +  K  R WLGTF+  EEAARAYD AA+R RG  A  NF +
Sbjct:   79 PFVFTATTKPVASAFVSTGIYLVGSAYAKKTVESAEQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPE 185          
BLAST of FC931942 vs. ExPASy Swiss-Prot
Match: RAVL3_ARATH (AP2/ERF and B3 domain-containing transcription factor At1g51120 OS=Arabidopsis thaliana GN=At1g51120 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.263e-12
Identity = 38/98 (38.78%), Postives = 55/98 (56.12%), Query Frame = 3
Query:  234 SSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDEL 527
            ++K+KGVV Q NG WGAQIY  H+R+WLGTF    EAA AYD A+ + R  DA  + +    +  +  E D +  + +    + I D   +H + D L
Sbjct:   44 TTKFKGVVQQQNGHWGAQIYADHRRIWLGTFKSAHEAAAAYDSASIKLRSFDA-NSHRNFPWSDFTLHEPDFQECYTTEAVLNMIRDGSYQHKFRDFL 140          
BLAST of FC931942 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.916e-11
Identity = 39/91 (42.86%), Postives = 52/91 (57.14%), Query Frame = 3
Query:  144 PESLCRVGSGASSVILDSEAGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQ--RVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQ 410
            P S  RV S  + +          E+R+    +Y+GV  +P G+W A+I + H+  RVWLGTF+  E AARAYD AA RFRG  A  NF +
Sbjct:   45 PSSFARVDSSHNPIEESMSKAFPEEARE-KKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPE 134          
BLAST of FC931942 vs. ExPASy Swiss-Prot
Match: ERF77_ARATH (Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.268e-11
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 3
Query:  240 KYKGVVPQPNGRWGAQIYE--KHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQMSCAGTSS 434
            +Y+GV  +P GR+ A+I +  K +RVWLG+FN  EEAARAYD AA RFRG  A TNF  +   G SS
Sbjct:   52 RYRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNFPLIGYYGISS 118          
BLAST of FC931942 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.268e-11
Identity = 38/80 (47.50%), Postives = 49/80 (61.25%), Query Frame = 3
Query:  177 SSVILDSEAGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQ--RVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQ 410
            S+V  + E+ +  E  K    KY+GV  +P G+W A+I + H+  RVWLGTF   E AARAYD AA RFRG  A  NF +
Sbjct:   43 SAVTKECESSMSLERPK----KYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPE 118          
BLAST of FC931942 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.574e-11
Identity = 39/126 (30.95%), Postives = 60/126 (47.62%), Query Frame = 3
Query:   60 CMDEXXXXXXXXXXPPITFPASIPPTKSPESLCRVGSGASSVILDSEAGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQ--RVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQMSCAGTS 431
            C D+           P  F ++  P  S  +    GS     +   +   E  + +   ++Y+G+  +P G+W A+I +  +  R+WLGTF   EEAARAYD AA+R RG  A  NF + +    S
Sbjct:   67 CDDDFDVGDVFADVKPFVFTSTPKPAVSAAA---EGSVFGKKVTGLDGDAEKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEENMKANS 189          
The following BLAST results are available for this feature:
BLAST of FC931942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RAP22_ARATH1.327e-1238.32Ethylene-responsive transcription factor RAP2-2 OS... [more]
RAVL3_ARATH2.263e-1238.78AP2/ERF and B3 domain-containing transcription fac... [more]
EF110_ARATH1.916e-1142.86Ethylene-responsive transcription factor ERF110 OS... [more]
ERF77_ARATH3.268e-1155.22Ethylene-responsive transcription factor 10 OS=Ara... [more]
RAP26_ARATH4.268e-1147.50Ethylene-responsive transcription factor RAP2-6 OS... [more]
RA212_ARATH5.574e-1130.95Ethylene-responsive transcription factor RAP2-12 O... [more]

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Properties
Property NameValue
Genbank descriptionC34202H01EF PostHarveN Citrus clementina cDNA clone C34202H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931942 ID=FC931942; Name=FC931942; organism=Citrus clementina; type=EST; length=649bp
ACCAGAACCTCTTGTAGACACACATAACACACATGAATTGCGAAGAAATG
GACGGAAGTTGCATGGACGAAAGCACGACAACTGATTCAGCATCAACATC
CCCGCCAATAACTTTCCCTGCGAGCATCCCGCCGACCAAGTCGCCGGAGA
GTCTTTGCCGAGTCGGCAGCGGAGCCTCCAGCGTGATTCTCGACTCGGAA
GCCGGCGTGGAGGCCGAGTCGAGGAAGCTCCCGTCTTCCAAATACAAAGG
GGTGGTCCCACAGCCGAATGGGAGGTGGGGCGCCCAGATATACGAGAAGC
ACCAAAGGGTCTGGCTCGGCACCTTCAACGAGGAAGAGGAAGCTGCCAGG
GCCTACGATATCGCTGCGCAGCGTTTCCGCGGACGCGATGCCGTCACAAA
CTTCAAGCAAATGTCTTGTGCTGGAACGTCCTCCGACGAGGGTGATATCG
AAATGGCGTTCTTGAGCTCCCACTCCAAGTCCGAGATCGTCGATATGCTG
AGGAAGCACACTTACAACGACGAGCTCGAGCAGAGCAAAAGAAACTACGG
CCTCGATGCCAACGGCAAGCGTGTAATCAAACACGGGGAAAGTGATGGTG
TTGCCACTGCCTTCGGTTCGGAACGGGTCCTTAAGCGCGTGACCAGCTT
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