FC932180

Overview
NameFC932180
Unique NameFC932180
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length599
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15463 contig Ccv1_Contig15463:1..599. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932180 vs. ExPASy Swiss-Prot
Match: RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5)

HSP 1 Score: 133.265 bits (334), Expect = 9.269e-31
Identity = 89/200 (44.50%), Postives = 111/200 (55.50%), Query Frame = 2
Query:   71 KRVASMAPK--QGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDV-KKPLDNKRKP---KPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDK-FDDKYF 568
            K+ +S A K  + KP  SRNP L+RGIG++SRS MY ++ L+  K                            KNGG                    +YP +DV +K L + +KP      +LR+SITPGTVLIIL GR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTKVDIS V + K   D YF
Sbjct:   37 KKSSSKAKKLRKSKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYF 227          
BLAST of FC932180 vs. ExPASy Swiss-Prot
Match: RL6A_YEAST (60S ribosomal protein L6-A OS=Saccharomyces cerevisiae GN=RPL6A PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 4.600e-30
Identity = 62/99 (62.63%), Postives = 78/99 (78.79%), Query Frame = 2
Query:  275 FYPADDVKKPLDNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDKFDDKYFA 571
            +YP++DV      ++  +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L    LL+SGPFK+NGVPLRRVN  YVI TSTKV + GVNV+KF+ +YFA
Sbjct:    9 WYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFA 107          
BLAST of FC932180 vs. ExPASy Swiss-Prot
Match: RL6_DICDI (60S ribosomal protein L6 OS=Dictyostelium discoideum GN=rpl6 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.600e-25
Identity = 58/87 (66.67%), Postives = 69/87 (79.31%), Query Frame = 2
Query:  314 KRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNV-DKFDDKYFA 571
            K+  +   LR SITPGTVLIILAGRF GKRVV LKQL SGL+L++GPFK+NGVPLRR++Q YVI TSTK+D+S V V    +D YFA
Sbjct:   79 KKVQQKVALRKSITPGTVLIILAGRFAGKRVVALKQLDSGLILITGPFKVNGVPLRRIDQRYVIATSTKIDVSSVKVAATINDAYFA 165          
BLAST of FC932180 vs. ExPASy Swiss-Prot
Match: RL6_SCHPO (60S ribosomal protein L6 OS=Schizosaccharomyces pombe GN=rpl6 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 9.926e-25
Identity = 58/100 (58.00%), Postives = 74/100 (74.00%), Query Frame = 2
Query:  275 FYPADDVKKPLDNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTST-KVDISGVNVDKFDDKYFA 571
            +YPA     P   ++  +PTKLRAS+ PGTV I+LAGRF+GKRVV L QL    L+V+GP+K+NGVP+RRVN  YVI TS  K+D+SGV+V+KF   YFA
Sbjct:   27 YYPAYRENVPKKARKAVRPTKLRASLAPGTVCILLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEKFTKAYFA 125          
BLAST of FC932180 vs. ExPASy Swiss-Prot
Match: RL6_CAEEL (60S ribosomal protein L6 OS=Caenorhabditis elegans GN=rpl-6 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.872e-23
Identity = 72/165 (43.64%), Postives = 95/165 (57.58%), Query Frame = 2
Query:   86 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIK--AKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLDNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLP-SGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNV-DKFDDKYF 568
            M  K+  P +SRN +L  G+ +FS S++  K+G    K         P+                    +  K  L +    K   LR ++TPGTVLI+LAGR KGKRVVFLKQLP SGLLLV+GP KING PLRR+ Q +VI TS KV++SGV + +  +D+YF
Sbjct:    1 MVGKRNLPVISRNFDLSPGVLRFSASRLRLKKGEKKPKFTKDTSAKLPK-----------------LQRNGTKFALGHS---KTVTLRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHINDEYF 145          
The following BLAST results are available for this feature:
BLAST of FC932180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RL6_RAT9.269e-3144.5060S ribosomal protein L6 OS=Rattus norvegicus GN=R... [more]
RL6A_YEAST4.600e-3062.6360S ribosomal protein L6-A OS=Saccharomyces cerevi... [more]
RL6_DICDI7.600e-2566.6760S ribosomal protein L6 OS=Dictyostelium discoide... [more]
RL6_SCHPO9.926e-2558.0060S ribosomal protein L6 OS=Schizosaccharomyces po... [more]
RL6_CAEEL1.872e-2343.6460S ribosomal protein L6 OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionC34205E03EF PostHarveN Citrus clementina cDNA clone C34205E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932180 ID=FC932180; Name=FC932180; organism=Citrus clementina; type=EST; length=599bp
GACTTTAGGGTTGTCTTTAGTTTTGCTCTGACGCTCGCACACGAAACTCT
CATTCACGGAGGCACAGCAGAAGCGGGTAGCATCAATGGCGCCGAAGCAA
GGGAAGCCAAGAGTGAGCAGGAATCCGGAGCTGATCCGAGGAATTGGAAA
GTTCTCTCGTTCAAAGATGTACCATAAGAGGGGTCTGTGGGCAATTAAAG
CCAAAAACGGTGGCGTCTTTCCTCGTCACGACCCTAAGCCCAAAGCCGCT
GCTCCCGCCGAGAAGCCCCCCAAGTTTTACCCCGCCGATGACGTCAAGAA
ACCACTCGACAACAAGCGCAAGCCTAAACCCACCAAGCTTAGAGCAAGCA
TCACCCCAGGGACAGTGCTGATTATACTAGCTGGAAGGTTCAAGGGTAAG
AGAGTTGTGTTCCTGAAGCAGCTTCCATCTGGGTTGCTTCTAGTTTCTGG
GCCATTTAAGATCAATGGTGTTCCTTTACGACGTGTGAACCAGACTTACG
TGATTGGAACTTCTACCAAAGTTGATATCTCCGGAGTGAATGTGGATAAG
TTTGATGATAAGTATTTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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