FC932180
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC932180 vs. ExPASy Swiss-Prot
Match: RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5) HSP 1 Score: 133.265 bits (334), Expect = 9.269e-31 Identity = 89/200 (44.50%), Postives = 111/200 (55.50%), Query Frame = 2 Query: 71 KRVASMAPK--QGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDV-KKPLDNKRKP---KPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDK-FDDKYF 568 K+ +S A K + KP SRNP L+RGIG++SRS MY ++ L+ K KNGG +YP +DV +K L + +KP +LR+SITPGTVLIIL GR +GKRVVFLKQL SGLLLV+GP +N VPLRR +Q +VI TSTKVDIS V + K D YF Sbjct: 37 KKSSSKAKKLRKSKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYF 227
BLAST of FC932180 vs. ExPASy Swiss-Prot
Match: RL6A_YEAST (60S ribosomal protein L6-A OS=Saccharomyces cerevisiae GN=RPL6A PE=1 SV=2) HSP 1 Score: 130.954 bits (328), Expect = 4.600e-30 Identity = 62/99 (62.63%), Postives = 78/99 (78.79%), Query Frame = 2 Query: 275 FYPADDVKKPLDNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDKFDDKYFA 571 +YP++DV ++ +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L LL+SGPFK+NGVPLRRVN YVI TSTKV + GVNV+KF+ +YFA Sbjct: 9 WYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFA 107
BLAST of FC932180 vs. ExPASy Swiss-Prot
Match: RL6_DICDI (60S ribosomal protein L6 OS=Dictyostelium discoideum GN=rpl6 PE=1 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 7.600e-25 Identity = 58/87 (66.67%), Postives = 69/87 (79.31%), Query Frame = 2 Query: 314 KRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNV-DKFDDKYFA 571 K+ + LR SITPGTVLIILAGRF GKRVV LKQL SGL+L++GPFK+NGVPLRR++Q YVI TSTK+D+S V V +D YFA Sbjct: 79 KKVQQKVALRKSITPGTVLIILAGRFAGKRVVALKQLDSGLILITGPFKVNGVPLRRIDQRYVIATSTKIDVSSVKVAATINDAYFA 165
BLAST of FC932180 vs. ExPASy Swiss-Prot
Match: RL6_SCHPO (60S ribosomal protein L6 OS=Schizosaccharomyces pombe GN=rpl6 PE=1 SV=2) HSP 1 Score: 113.235 bits (282), Expect = 9.926e-25 Identity = 58/100 (58.00%), Postives = 74/100 (74.00%), Query Frame = 2 Query: 275 FYPADDVKKPLDNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTST-KVDISGVNVDKFDDKYFA 571 +YPA P ++ +PTKLRAS+ PGTV I+LAGRF+GKRVV L QL L+V+GP+K+NGVP+RRVN YVI TS K+D+SGV+V+KF YFA Sbjct: 27 YYPAYRENVPKKARKAVRPTKLRASLAPGTVCILLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEKFTKAYFA 125
BLAST of FC932180 vs. ExPASy Swiss-Prot
Match: RL6_CAEEL (60S ribosomal protein L6 OS=Caenorhabditis elegans GN=rpl-6 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.872e-23 Identity = 72/165 (43.64%), Postives = 95/165 (57.58%), Query Frame = 2 Query: 86 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIK--AKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLDNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLP-SGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNV-DKFDDKYF 568 M K+ P +SRN +L G+ +FS S++ K+G K P+ + K L + K LR ++TPGTVLI+LAGR KGKRVVFLKQLP SGLLLV+GP KING PLRR+ Q +VI TS KV++SGV + + +D+YF Sbjct: 1 MVGKRNLPVISRNFDLSPGVLRFSASRLRLKKGEKKPKFTKDTSAKLPK-----------------LQRNGTKFALGHS---KTVTLRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHINDEYF 145 The following BLAST results are available for this feature:
BLAST of FC932180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932180 ID=FC932180; Name=FC932180; organism=Citrus clementina; type=EST; length=599bpback to top |