FC932180
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932180 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1) HSP 1 Score: 265.003 bits (676), Expect = 2.041e-70 Identity = 132/160 (82.50%), Postives = 138/160 (86.25%), Query Frame = 2 Query: 89 APKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLDNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDKFDDKYF 568 A KQ KP VSRNPEL+RGIGK+SRSKMYHKRGLWAIKAKNGGVFP+H FYPADDVKKPL NKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFK+NGVPLRRVNQ YVI TSTKVDISGVNV+KFDDKYF Sbjct: 3 AAKQRKPHVSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYF 162
BLAST of FC932180 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1) HSP 1 Score: 257.299 bits (656), Expect = 4.256e-68 Identity = 127/161 (78.88%), Postives = 137/161 (85.09%), Query Frame = 2 Query: 86 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLDNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDKFDDKYF 568 M KQ P+V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD FYPA+DVKKPL N+R KPTKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ YVIGTSTKVDISGV +DKFDDKYF Sbjct: 1 MPAKQRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYF 161
BLAST of FC932180 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1) HSP 1 Score: 256.914 bits (655), Expect = 5.558e-68 Identity = 124/154 (80.52%), Postives = 136/154 (88.31%), Query Frame = 2 Query: 107 PRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLDNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDKFDDKYF 568 P+V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD FYPA+DVKKPL N+RKPKPTKL+ASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ YVIGTSTK+DISGVN +KFDDKYF Sbjct: 8 PKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYF 161
BLAST of FC932180 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1) HSP 1 Score: 252.292 bits (643), Expect = 1.369e-66 Identity = 125/161 (77.64%), Postives = 135/161 (83.85%), Query Frame = 2 Query: 86 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLDNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDKFDDKYF 568 M KQ +V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD FYPA+DVKKPL N+R KP KLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ YVIGTSTKVDISGV +DKFDDKYF Sbjct: 1 MPAKQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYF 161
BLAST of FC932180 vs. ExPASy Swiss-Prot
Match: RL6_HUMAN (60S ribosomal protein L6 OS=Homo sapiens GN=RPL6 PE=1 SV=3) HSP 1 Score: 140.584 bits (353), Expect = 5.805e-33 Identity = 87/190 (45.79%), Postives = 108/190 (56.84%), Query Frame = 2 Query: 92 PKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDV-KKPLDNKRKP---KPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDK-FDDKYF 568 PK+GKP SRNP L+RGIG++SRS MY ++ ++ K KNGG +YP +DV +K L + +KP KLRASITPGT+LIIL GR +GKRVVFLKQL SGLLLV+GP +N VPLRR +Q +VI TSTK+DIS V + K D YF Sbjct: 37 PKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYF 217
BLAST of FC932180 vs. ExPASy Swiss-Prot
Match: RL6_CHILA (60S ribosomal protein L6 OS=Chinchilla lanigera GN=RPL6 PE=2 SV=3) HSP 1 Score: 140.584 bits (353), Expect = 5.805e-33 Identity = 89/200 (44.50%), Postives = 112/200 (56.00%), Query Frame = 2 Query: 62 AQQKRVASMAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDV-KKPLDNKRKP---KPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDK-FDDKYF 568 A++ V + K+G+P SRNP L+RGIG++SRS MY ++ L+ K KNGG +YP +DV +K L + +KP KLRASITPGTVLIIL GR +GKRVVFLKQL SGLLLV+GP +N VPLRR +Q +VI TSTK+DIS V + K D YF Sbjct: 27 AKKANVKAKKSKKGQPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYTAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTVLIILTGRHRGKRVVFLKQLASGLLLVTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYF 217
BLAST of FC932180 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3) HSP 1 Score: 140.198 bits (352), Expect = 7.582e-33 Identity = 86/189 (45.50%), Postives = 108/189 (57.14%), Query Frame = 2 Query: 95 KQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDV-KKPLDNKRKP---KPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNV-DKFDDKYF 568 K+GKP SRNP L+RGIG++SRS MY ++ L+ K KNGG +YP +DV +K L + +KP KLRASITPGT+LIIL GR +GKRV+FLKQL SGLLLV+GP +N VPLRR +Q +VI TSTK+DISGV + + D YF Sbjct: 34 KKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYF 213
BLAST of FC932180 vs. ExPASy Swiss-Prot
Match: RL6_BOVIN (60S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=2 SV=3) HSP 1 Score: 140.198 bits (352), Expect = 7.582e-33 Identity = 87/189 (46.03%), Postives = 108/189 (57.14%), Query Frame = 2 Query: 95 KQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDV-KKPLDNKRKP---KPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNV-DKFDDKYF 568 K+GKP SRNP L+RGIG++SRS MY ++ L+ K KNGG +YP +DV +K L + +KP KLRASITPGT+LIIL GR +GKRVVFLKQL SGLLLV+GP +N VPLRR +Q +VI TSTK+DISGV + + D YF Sbjct: 37 KKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYF 216
BLAST of FC932180 vs. ExPASy Swiss-Prot
Match: RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3) HSP 1 Score: 137.502 bits (345), Expect = 4.915e-32 Identity = 88/191 (46.07%), Postives = 107/191 (56.02%), Query Frame = 2 Query: 92 PKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDV-KKPLDNKRKP---KPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDK-FDDKYF 568 PK+ KP SRNP L+RGIG++SRS MY ++ L+ K KNGG +YP +DV +K L + +KP +LR+SITPGTVLIIL GR +GKRVVFLKQL SGLLLV+GP IN VPLRR +Q +VI TSTKVDIS V + K D YF Sbjct: 44 PKKAKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYF 225
BLAST of FC932180 vs. ExPASy Swiss-Prot
Match: RL6B_YEAST (60S ribosomal protein L6-B OS=Saccharomyces cerevisiae GN=RPL6B PE=1 SV=4) HSP 1 Score: 133.65 bits (335), Expect = 7.097e-31 Identity = 63/99 (63.64%), Postives = 79/99 (79.80%), Query Frame = 2 Query: 275 FYPADDVKKPLDNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDKFDDKYFA 571 +YP++DV P ++ +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L LLV+GPFK+NGVPLRRVN YVI TSTKV + GVNV+KF+ +YFA Sbjct: 9 WYPSEDVAAPKKTRKAVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLVTGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFA 107 The following BLAST results are available for this feature:
BLAST of FC932180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932180 ID=FC932180; Name=FC932180; organism=Citrus clementina; type=EST; length=599bpback to top |