FC932583

Overview
NameFC932583
Unique NameFC932583
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12223 contig Ccv1_Contig12223:5..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932583 vs. ExPASy Swiss-Prot
Match: Y1251_PYRAB (UPF0076 protein PYRAB12510 OS=Pyrococcus abyssi GN=PYRAB12510 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.345e-27
Identity = 58/122 (47.54%), Postives = 83/122 (68.03%), Query Frame = 2
Query:  254 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 619
            KE + T KAP  +GPYSQAIK  N +FV+G + + PETG+ V   I++QT++V++NI  IL+ +GA  + VVK T+ L DL DF  +NE+Y++YF    PAR   +V+ LP D  +E+E IA
Sbjct:    3 KEVIFTEKAPKPIGPYSQAIKVGNFIFVAGQIPIDPETGEIVKGDIKEQTKRVIENIKAILEEAGASLNDVVKVTVYLKDLNDFAKMNEVYSEYFGESKPARVAVEVSRLPKDVLIEMEAIA 124          
BLAST of FC932583 vs. ExPASy Swiss-Prot
Match: YABJ_BACSU (UPF0076 protein yabJ OS=Bacillus subtilis GN=yabJ PE=1 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 2.148e-25
Identity = 58/123 (47.15%), Postives = 84/123 (68.29%), Query Frame = 2
Query:  251 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 619
            + +AV T  APAA+GPYSQ I  NN+ + SG + L P +G+ V+  I++QT QV  N+  +L+ +GA + +VVK T+ +AD++ F  VNE+Y +YF +  PAR+  +VA LP DA VEIE IA
Sbjct:    1 MTKAVHTKHAPAAIGPYSQGIIVNNMFYSSGQIPLTP-SGEMVNGDIKEQTHQVFSNLKAVLEEAGASFETVVKATVFIADMEQFAEVNEVYGQYFDTHKPARSCVEVARLPKDALVEIEVIA 122          
BLAST of FC932583 vs. ExPASy Swiss-Prot
Match: DFRA_MYXXA (Protein dfrA OS=Myxococcus xanthus GN=dfrA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.250e-25
Identity = 58/124 (46.77%), Postives = 85/124 (68.55%), Query Frame = 2
Query:  254 KEAVVTNKAPAALGPYSQAIK--ANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 619
            ++A+ +++AP A+GPYSQA++  A  + F+SG + L P T + V   +  Q E+V++N+  +L ASG D+S VV+ TI L DL DF  VNE+Y +YF    PARAT QV+ALP  ++VEI+ IA
Sbjct:    6 RKAIHSDQAPKAIGPYSQAVQVDAGKMTFLSGQIPLDPATMEMVQGDVVAQAERVMENLKAVLAASGLDFSHVVRCTIFLTDLGDFARVNEVYGRYFTGAPPARATVQVSALPRGSKVEIDAIA 129          
BLAST of FC932583 vs. ExPASy Swiss-Prot
Match: Y709_SYNY3 (UPF0076 protein slr0709 OS=Synechocystis sp. (strain PCC 6803) GN=slr0709 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 57/124 (45.97%), Postives = 83/124 (66.94%), Query Frame = 2
Query:  263 VVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSD-TIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYF-PSPAPARATYQVAALPLDARVEIECIAALP 628
            + T +APA +GPY+QAI AN  +F +G + L P+T   + +  +E Q +QVL N+G +L+ +G  + +VVKTT+ L D+ DF  VN IY +YF  + APAR+  +VA LP D  VEI+C+A LP
Sbjct:    6 IQTAQAPAPVGPYNQAIAANGFLFTAGQIALDPQTMTIMGEGNVEVQAKQVLTNLGAVLQEAGCGWENVVKTTVFLKDMNDFAAVNAIYGQYFDEATAPARSCVEVARLPKDVLVEIDCVAVLP 129          
BLAST of FC932583 vs. ExPASy Swiss-Prot
Match: Y3206_SULSO (UPF0076 protein SSO3206 OS=Sulfolobus solfataricus GN=SSO3206 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.375e-24
Identity = 53/123 (43.09%), Postives = 82/123 (66.67%), Query Frame = 2
Query:  251 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 619
            +KE + T KAP  +GPYSQ +K  ++++VSG + + P+T + V   IE+QT +V++NI  +L+A+G     VV + + L D+KDF+  NE+Y+KYF +  PAR T +V+ LP D  +EI  IA
Sbjct:    1 MKEIIFTEKAPKPIGPYSQGVKVGDILYVSGQIPVDPKTNEVVGKNIEEQTIRVIENIKAVLEAAGYMLDDVVMSFVYLKDIKDFQRFNEVYSKYFSNKPPARVTVEVSRLPRDVLIEITVIA 123          
BLAST of FC932583 vs. ExPASy Swiss-Prot
Match: Y364_AQUAE (UPF0076 protein aq_364 OS=Aquifex aeolicus GN=aq_364 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.179e-23
Identity = 57/121 (47.11%), Postives = 79/121 (65.29%), Query Frame = 2
Query:  263 VVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFP--SPAPARATYQVAALPLDARVEIECIA 619
            + T KAP  +GPYSQA++ N  +F+SG +G+ PETGK V +  ++Q  Q+ KN+  IL+ +G    ++VK TI + D+K FK +NEIY  YF   S  PAR T  V  LPL+A VEIE +A
Sbjct:    4 IKTPKAPVPVGPYSQAVEVNGFLFISGQIGINPETGKLV-EGFKEQVIQIFKNVDAILEEAGLKRENIVKVTIYITDIKKFKELNEIYEDYFKDVSVKPARVTVGVKELPLNAEVEIEIVA 123          
BLAST of FC932583 vs. ExPASy Swiss-Prot
Match: ALDR_LACLA (Putative regulator aldR OS=Lactococcus lactis subsp. lactis GN=aldR PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23
Identity = 56/119 (47.06%), Postives = 76/119 (63.87%), Query Frame = 2
Query:  263 VVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 619
            + T  APAA+GPY Q    N L++ SG + L P  G+ V D+IE QTEQV+KNI  ILK + +D+  V+KTT  L +++DF   N IY+K+F    PAR+   VA LP +  +EIE IA
Sbjct:    4 IATLDAPAAIGPYVQGKIVNGLLYASGQIPLNPLNGEIVGDSIETQTEQVMKNISAILKEAHSDFDLVIKTTCFLKNIEDFSRFNAIYSKFFDKEFPARSAVGVAGLPKNVLIEIEVIA 122          
BLAST of FC932583 vs. ExPASy Swiss-Prot
Match: Y811_SULTO (UPF0076 protein ST0811 OS=Sulfolobus tokodaii GN=ST0811 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.479e-23
Identity = 56/122 (45.90%), Postives = 73/122 (59.84%), Query Frame = 2
Query:  257 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAA 622
            E V T KAP  +GPYSQAIK  N ++VSG + + P T + V   I+ QT QVL NI EI+KA+G   S V    + L D+  F   N +YA+YF    PAR T +V+ LP DA +EI  I +
Sbjct:    2 ETVFTEKAPKPVGPYSQAIKVGNTLYVSGQIPIDPRTNEIVKGDIKVQTRQVLDNIKEIVKAAGFSLSDVAMAFVFLKDMNMFNDFNSVYAEYFKDKPPARVTVEVSRLPKDALIEIAVICS 123          
BLAST of FC932583 vs. ExPASy Swiss-Prot
Match: HMF1_YEAST (Protein HMF1 OS=Saccharomyces cerevisiae GN=HMF1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 56/120 (46.67%), Postives = 76/120 (63.33%), Query Frame = 2
Query:  263 VVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAA 622
            V+   APAA   YS A+K NNL+F+SG + + P+  K V  +I D+ EQV++NI  +L+AS +    VVK  I LAD+  F   N +YAKYF +  PAR+   VAALPL   +E+E IAA
Sbjct:    8 VICESAPAAAASYSHAMKVNNLIFLSGQIPVTPDN-KLVEGSIADKAEQVIQNIKNVLEASNSSLDRVVKVNIFLADINHFAEFNSVYAKYFNTHKPARSCVAVAALPLGVDMEMEAIAA 126          
BLAST of FC932583 vs. ExPASy Swiss-Prot
Match: Y142_LEUMC (UPF0076 protein in leuC 5'region OS=Leuconostoc mesenteroides subsp. cremoris PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.792e-22
Identity = 55/126 (43.65%), Postives = 78/126 (61.90%), Query Frame = 2
Query:  254 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPA----PARATYQVAALPLDARVEIECIA 619
            K+ V T  AP ALGPYSQAI  +N +++SG +G+ PET +F   T  +Q  Q+  NI  IL  +    + +VK  +   D+ DF  VN+IYA+YF + +    PAR+  QVAALP +A++EIE  A
Sbjct:    3 KKVVSTTTAPKALGPYSQAILNDNTLYISGQIGIDPETDEFAGATTAEQAHQIFDNIDNILHEAEFSRNDIVKAALFFDDIADFALVNDIYAQYFDTTSVEEFPARSAVQVAALPKNAKLEIEITA 128          
The following BLAST results are available for this feature:
BLAST of FC932583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
Y1251_PYRAB1.345e-2747.54UPF0076 protein PYRAB12510 OS=Pyrococcus abyssi GN... [more]
YABJ_BACSU2.148e-2547.15UPF0076 protein yabJ OS=Bacillus subtilis GN=yabJ ... [more]
DFRA_MYXXA6.250e-2546.77Protein dfrA OS=Myxococcus xanthus GN=dfrA PE=3 SV... [more]
Y709_SYNY31.066e-2445.97UPF0076 protein slr0709 OS=Synechocystis sp. (stra... [more]
Y3206_SULSO2.375e-2443.09UPF0076 protein SSO3206 OS=Sulfolobus solfataricus... [more]
Y364_AQUAE1.179e-2347.11UPF0076 protein aq_364 OS=Aquifex aeolicus GN=aq_3... [more]
ALDR_LACLA1.539e-2347.06Putative regulator aldR OS=Lactococcus lactis subs... [more]
Y811_SULTO4.479e-2345.90UPF0076 protein ST0811 OS=Sulfolobus tokodaii GN=S... [more]
HMF1_YEAST9.978e-2346.67Protein HMF1 OS=Saccharomyces cerevisiae GN=HMF1 P... [more]
Y142_LEUMC3.792e-2243.65UPF0076 protein in leuC 5'region OS=Leuconostoc me... [more]

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Properties
Property NameValue
Genbank descriptionC34210B11EF PostHarveN Citrus clementina cDNA clone C34210B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932583 ID=FC932583; Name=FC932583; organism=Citrus clementina; type=EST; length=719bp
GATTCAACTCTCGCTCACTTCGCTCGAGGGAAACTGAGAGAGCGACAGCG
ACAAAGACGAAGACATGGCGTGGTGTTCATTACGGTCGTTGAATGTCCCA
ACCATCGACATGGGCGCACTGCGCACCCGCTCTCGCTTAGCCGCCGTCGG
AATCGGCTGCGCCTCGGTCGCCGGGTCCAGCGTCTGGCGCTCTTCTTGCA
AGAAACACTCCACTCCCTTTGCTTGCTTATCCACTTCCGCCGTTTCTAAT
TTGAAGGAGGCTGTTGTGACTAACAAGGCTCCAGCAGCATTGGGACCTTA
TTCTCAGGCCATCAAAGCAAATAACCTCGTTTTTGTCTCTGGGGTTCTTG
GTTTAGTTCCAGAGACTGGGAAATTTGTCTCAGATACTATAGAGGACCAG
ACAGAGCAGGTTCTTAAAAATATTGGGGAAATACTGAAAGCTAGCGGCGC
TGACTATTCCTCTGTGGTTAAGACAACAATTTTGTTGGCAGACTTGAAAG
ACTTCAAGACAGTGAATGAGATCTATGCTAAATACTTTCCTTCACCAGCT
CCAGCACGTGCAACATATCAAGTAGCAGCACTGCCGTTGGATGCCAGGGT
TGAGATTGAATGCATTGCAGCCCTTCCCAATGCTTGATTGGGGTGAAATT
CTTCCAGGATAATCGAATAAAGGGGAAAGAAGCACACCTTTGAGGACAGG
ATTTTGGAGGCATTTTCTC
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