FC932602

Overview
NameFC932602
Unique NameFC932602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length797
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: NRAM1_BOVIN (Natural resistance-associated macrophage protein 1 OS=Bos taurus GN=SLC11A1 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.184e-46
Identity = 99/195 (50.77%), Postives = 126/195 (64.62%), Query Frame = 3
Query:  111 TREGESGSKDSNETNRLLPIPSPPSSTEDDEEVAFDSREKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            TR G   S  S E     P  +PP  T           EKI I D +S +           FS +KLW FTGPGFLMSIAFLDPGN+E DLQ+GA+AG+ LLW+L+WAT++GLL Q L+AR+GV TG+ L E+C   YP   R +LW   E+A++G+D+QEVIG+AIA  +LS G +PLW GV+IT +D F FLF
Sbjct:   13 TRYGSISSPPSPE-----PQQAPPGGTY--------LSEKIPIPDTESGT-----------FSLRKLWAFTGPGFLMSIAFLDPGNIESDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGEVCHLYYPKVPRILLWLTIELAIVGSDMQEVIGTAIAFSLLSAGRIPLWGGVLITVVDTFFFLF 183          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: NRAM1_BISBI (Natural resistance-associated macrophage protein 1 OS=Bison bison GN=SLC11A1 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.184e-46
Identity = 99/195 (50.77%), Postives = 126/195 (64.62%), Query Frame = 3
Query:  111 TREGESGSKDSNETNRLLPIPSPPSSTEDDEEVAFDSREKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            TR G   S  S E     P  +PP  T           EKI I D +S +           FS +KLW FTGPGFLMSIAFLDPGN+E DLQ+GA+AG+ LLW+L+WAT++GLL Q L+AR+GV TG+ L E+C   YP   R +LW   E+A++G+D+QEVIG+AIA  +LS G +PLW GV+IT +D F FLF
Sbjct:   13 TRYGSISSPPSPE-----PQQAPPGGTY--------LSEKIPIPDTESGT-----------FSLRKLWAFTGPGFLMSIAFLDPGNIESDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGEVCHLYYPKVPRILLWLTIELAIVGSDMQEVIGTAIAFSLLSAGRIPLWGGVLITIVDAFFFLF 183          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: NRAM1_SHEEP (Natural resistance-associated macrophage protein 1 OS=Ovis aries GN=SLC11A1 PE=2 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 2.020e-46
Identity = 98/193 (50.78%), Postives = 129/193 (66.84%), Query Frame = 3
Query:  120 GESGSKDSNETNRLLPIPSPPS-STEDDEEVAFDSREKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            G++G+ +   T R   I SPPS   +          EKI I D +S +           FS +KLW FTGPGFLMSIAFLDPGN+E DLQ+GA+AG+ LLW+L+WAT++GLL Q L+AR+GV TG+ L E+C   YP   R +LW   E+A++G+D+QEVIG+AIA  +LS G +PLW GV+IT +D F FLF
Sbjct:    3 GDTGTPNQGGT-RYGSISSPPSPGPQQAPPGGTYLSEKIPIPDTESGA-----------FSLRKLWAFTGPGFLMSIAFLDPGNIESDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGEVCHLYYPKVPRTLLWLTIELAIVGSDMQEVIGTAIAFSLLSAGRIPLWGGVLITIVDTFFFLF 183          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: NRAM1_BUBBU (Natural resistance-associated macrophage protein 1 OS=Bubalus bubalis GN=SLC11A1 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.638e-46
Identity = 98/193 (50.78%), Postives = 127/193 (65.80%), Query Frame = 3
Query:  120 GESGSKDSNETNRLLPIPSPPS-STEDDEEVAFDSREKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            G++G      T R   I SPPS   +          EKI I D +S +           FS +KLW FTGPGFLMSIAFLDPGN+E DLQ+GA+AG+ LLW+L+WAT++GLL Q L+AR+GV TG+ L E+C   YP   R +LW   E+A++G+D+QEVIG+AIA  +LS G +PLW GV+IT +D F FLF
Sbjct:    3 GDTGPSKQGGT-RYGSISSPPSPGPQQAPPGGTYLGEKIPIPDTESGA-----------FSLRKLWAFTGPGFLMSIAFLDPGNIESDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGEVCHLYYPKVPRILLWLTIELAIVGSDMQEVIGTAIAFSLLSAGRIPLWGGVLITVVDTFFFLF 183          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: NRAM1_CEREL (Natural resistance-associated macrophage protein 1 OS=Cervus elaphus GN=SLC11A1 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.499e-46
Identity = 89/157 (56.69%), Postives = 115/157 (73.25%), Query Frame = 3
Query:  225 EKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            EKI I D +S +           FS +KLW FTGPGFLMSIAFLDPGN+E DLQ+GA+AG+ LLW+L+WAT++GLL Q L+AR+GV TG+ L E+C   YP   R +LW   E+A++G+D+QEVIG+AIA  +LS G +PLW GV+IT +D F FLF
Sbjct:   38 EKIPIPDTESGA-----------FSLRKLWAFTGPGFLMSIAFLDPGNIESDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGEVCHLYYPKVPRILLWLTIELAIVGSDMQEVIGTAIAFSLLSAGRIPLWGGVLITIVDTFFFLF 183          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: NRAM1_CHICK (Natural resistance-associated macrophage protein 1 OS=Gallus gallus GN=SLC11A1 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 7.675e-46
Identity = 84/144 (58.33%), Postives = 110/144 (76.39%), Query Frame = 3
Query:  264 LNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            +++     P FS++KLW FTGPGFLMSIA+LDPGN+E DLQ GA+AG+ LLW+L+WAT++GLL Q L+ R+GV TG+ LAE+C   YP   R +LW M E+A+IG+D+QEVIG+AIA  +LS G +PLW GV+IT  D   FLF
Sbjct:   48 ISIPKGSTPGFSFRKLWAFTGPGFLMSIAYLDPGNVESDLQCGAVAGFKLLWVLLWATVLGLLCQRLAIRLGVVTGKDLAEICYLYYPRVPRVLLWLMMEIAIIGSDMQEVIGTAIAFSLLSAGRIPLWGGVLITITDTLFFLF 191          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: NRAM1_HUMAN (Natural resistance-associated macrophage protein 1 OS=Homo sapiens GN=SLC11A1 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.002e-45
Identity = 84/134 (62.69%), Postives = 107/134 (79.85%), Query Frame = 3
Query:  294 FSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            FS +KLW FTGPGFLMSIAFLDPGN+E DLQ+GA+AG+ LLW+L+WAT++GLL Q L+AR+GV TG+ L E+C   YP   R VLW   E+A++G+D+QEVIG+AIA  +LS G +PLW GV+IT +D F FLF
Sbjct:   53 FSLRKLWAFTGPGFLMSIAFLDPGNIESDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGEVCHLYYPKVPRTVLWLTIELAIVGSDMQEVIGTAIAFNLLSAGRIPLWGGVLITIVDTFFFLF 186          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: NRAM1_MOUSE (Natural resistance-associated macrophage protein 1 OS=Mus musculus GN=Slc11a1 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.710e-45
Identity = 88/157 (56.05%), Postives = 114/157 (72.61%), Query Frame = 3
Query:  225 EKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            EKI I  AD  +           FS +KLW FTGPGFLMSIAFLDPGN+E DLQ+GA+AG+ LLW+L+WAT++GLL Q L+AR+GV TG+ L E+C   YP   R +LW   E+A++G+D+QEVIG+AI+  +LS G +PLW GV+IT +D F FLF
Sbjct:   38 EKIPIPSADQGT-----------FSLRKLWAFTGPGFLMSIAFLDPGNIESDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGEVCHLYYPKVPRILLWLTIELAIVGSDMQEVIGTAISFNLLSAGRIPLWGGVLITIVDTFFFLF 183          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: NRAM1_PIG (Natural resistance-associated macrophage protein 1 OS=Sus scrofa GN=SLC11A1 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.108e-44
Identity = 89/177 (50.28%), Postives = 121/177 (68.36%), Query Frame = 3
Query:  165 PIPSPPSSTEDDEEVAFDSREKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            P P PP        ++    EKI I +A+  +           FS +KLW FTGPGFLMSIA+LDPGN++ DLQ+GA+AG+ LLW+L+WAT++GLL Q L+AR+GV TG+ L E+C   YP   R +LW   E+A++G+D+QEVIG+AIA  +LS G +PLW GV+IT +D F FL+
Sbjct:   22 PSPGPPQVPPGGTYLS----EKIPIPNAEPGT-----------FSLRKLWAFTGPGFLMSIAYLDPGNIQSDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGEICHLYYPKVPRTLLWLNMELAIVGSDMQEVIGTAIAFNLLSAGRIPLWGGVLITVVDTFFFLY 183          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: NRAML_CAEEL (NRAMP-like transporter smf-1 OS=Caenorhabditis elegans GN=smf-1 PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.469e-44
Identity = 98/209 (46.89%), Postives = 137/209 (65.55%), Query Frame = 3
Query:  141 SNETNRLLPIPSPPSSTEDDEEVAFDSREKILIVDADSASTLNVDGDQVPP-FSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIF-LF*RLWSEELELFCCIIALWLIVA 761
            SN    + P   P   T++D        + +L  DA+S   +++  D V   FS+KKLW FTGPGFLMSIA+LDPGN+E DLQSGA A Y LLW+L+ A ++G+L+Q +SAR+GV +G+H+AE+  + YP   R +LW M E+A++ +D+QEVIG+AIAI +LS G +PL+ GV IT LD F F L  R    +LEL    + L + V+
Sbjct:    4 SNNDGPIEPEAEPWRITQNDH-----LEQDLLEEDAESQERVDIPVDDVEKAFSFKKLWAFTGPGFLMSIAYLDPGNIESDLQSGAQAAYKLLWVLLSAHIIGMLLQRMSARLGVVSGKHMAEVAYQFYPRLPRIILWLMIEIAIVCSDMQEVIGTAIAIFLLSKGFVPLYVGVFITILDTFTFLLIDRYGIRKLELIFGFLILTMTVS 207          
The following BLAST results are available for this feature:
BLAST of FC932602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
NRAM1_BOVIN1.184e-4650.77Natural resistance-associated macrophage protein 1... [more]
NRAM1_BISBI1.184e-4650.77Natural resistance-associated macrophage protein 1... [more]
NRAM1_SHEEP2.020e-4650.78Natural resistance-associated macrophage protein 1... [more]
NRAM1_BUBBU2.638e-4650.78Natural resistance-associated macrophage protein 1... [more]
NRAM1_CEREL4.499e-4656.69Natural resistance-associated macrophage protein 1... [more]
NRAM1_CHICK7.675e-4658.33Natural resistance-associated macrophage protein 1... [more]
NRAM1_HUMAN1.002e-4562.69Natural resistance-associated macrophage protein 1... [more]
NRAM1_MOUSE1.710e-4556.05Natural resistance-associated macrophage protein 1... [more]
NRAM1_PIG1.108e-4450.28Natural resistance-associated macrophage protein 1... [more]
NRAML_CAEEL2.469e-4446.89NRAMP-like transporter smf-1 OS=Caenorhabditis ele... [more]

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Properties
Property NameValue
Genbank descriptionC34210D06EF PostHarveN Citrus clementina cDNA clone C34210D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932602 ID=FC932602; Name=FC932602; organism=Citrus clementina; type=EST; length=797bp
GCCGGCTCACCAGTCCTCAGAGGTGAGATCTGTGGAACAGAATCTACTGC
CGAGTTTGGAATATTCCGTGCGTAGATAAAACAAAGAAAGTGAAAATGGA
CTCCTCCGAAACCCGAGAAGGAGAAAGCGGGTCCAAAGACAGCAATGAAA
CCAACCGCCTCCTTCCAATACCGTCACCACCGTCCTCAACGGAGGACGAC
GAGGAAGTCGCGTTCGATTCACGAGAGAAAATCTTGATCGTCGACGCAGA
TTCAGCCTCCACGTTGAACGTTGACGGTGACCAAGTGCCGCCTTTTTCGT
GGAAAAAGCTTTGGTTATTCACTGGACCCGGTTTCTTAATGAGCATAGCG
TTTCTGGATCCGGGGAATCTGGAGGGGGATCTCCAATCGGGGGCGATAGC
AGGGTACTCGCTTCTTTGGTTGCTAATGTGGGCCACCCTCATGGGCTTGC
TTATTCAGCTGCTGTCGGCACGAGTAGGGGTGGCCACGGGGCGTCACTTG
GCAGAGCTGTGTAGAGAGGAGTACCCCAATTGGGCGCGATTCGTGTTGTG
GTTCATGGCTGAAGTGGCCTTGATTGGTGCCGATATTCAGGAAGTAATTG
GGAGTGCCATTGCTATCCAGATTTTGAGTCACGGGGTCTTGCCACTATGG
GCCGGTGTCATCATTACGGCGTTGGATTGTTTCATATTTTTATTTTAGAG
ACTATGGAGTGAGGAACTGGAGCTGTTTTGCTGTATAATTGCACTATGGC
TTATCGTTGCTGGATGTTGCGACCACACCAGTGAAAAAAAAAAAAAA
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