FC932602

Overview
NameFC932602
Unique NameFC932602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length797
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_VIBHB (Probable manganese transport protein mntH OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=mntH PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.840e-23
Identity = 53/131 (40.46%), Postives = 83/131 (63.36%), Query Frame = 3
Query:  303 KKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPN-WARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            K+  +  GP F+ +I ++DPGN   +++SG+  GY LLW+++WA LM +LIQ LSA++G+ TG++LAE  R+  PN WA    W  AE+  I  D+ E IG+A+  Q++    + L  G +ITA+   + L
Sbjct:   28 KRKLMMLGPAFIAAIGYIDPGNFATNIESGSSFGYQLLWVVLWANLMAMLIQYLSAKLGIVTGKNLAEHLRDHLPNKWAVGFYWIQAEIIAIATDLAEFIGAAVGFQLVFG--ISLMEGAMITAVATVMIL 156          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_SHIDS (Manganese transport protein mntH OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=mntH PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.840e-23
Identity = 50/123 (40.65%), Postives = 81/123 (65.85%), Query Frame = 3
Query:  324 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D+ E IG+AI  +++    + L  G ++T +  F+ L
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAIGFKLILG--VSLLQGAVLTGIATFLTL 143          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_LACBR (Manganese transport protein mntH OS=Lactobacillus brevis GN=mntH PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.840e-23
Identity = 59/168 (35.12%), Postives = 101/168 (60.12%), Query Frame = 3
Query:  201 EEVAFDSREKIL-IVDADSASTLNVDGDQVPPFS---WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            E VA + + K     + ++ S   V+G    P +   W+ L+ +TGPG L+++ ++DPGN    +  GA   YSLL +++ ++L+ +L+Q ++AR+G+ TG+ LA+L RE        +LW + E A++  D+ E+IGS IAI++L +  +PL  G++IT  D  I L
Sbjct:    9 ESVAEEPKHKFFQSTEGENKSLDEVNGSVKVPKNAGFWRTLFAYTGPGILIAVGYMDPGNWITSIAGGAQFKYSLLSVILISSLIAMLLQSMAARLGIVTGKDLAQLTRERTSKTMGIILWLITESAIMATDVAEIIGSGIAIKLLFN--IPLVVGILITTADVLILL 174          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_ECO27 (Manganese transport protein mntH OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=mntH PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.840e-23
Identity = 50/123 (40.65%), Postives = 81/123 (65.85%), Query Frame = 3
Query:  324 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D+ E IG+AI  +++    + L  G ++T +  F+ L
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPFVWFYWVQAEIIAMATDLAEFIGAAIGFKLILG--VSLLQGAVLTGIATFLIL 143          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_XYLFT (Probable manganese transport protein mntH OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=mntH PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.402e-23
Identity = 58/155 (37.42%), Postives = 94/155 (60.65%), Query Frame = 3
Query:  306 KLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALD-CFIFLF*RLWSEELELFCCIIALWLIVAGC 767
            +L  F GPG+++S+ ++DPGN    L  G+  GY LL +++ + +M +++Q L+AR+G+A+   LA+ CR  Y       LW + E+A+I  D+ EVIG+AIA+ +L    +P+  G +ITA+D   + L        LE F  +IAL L++ GC
Sbjct:   58 RLLAFLGPGYMVSVGYMDPGNWATGLAGGSRFGYMLLSVILLSNVMAIVLQALAARLGIASDMDLAQACRARYSRGTNLALWAVCELAIIACDLAEVIGTAIALNLLLG--VPIILGAVITAVDVVLVLLLMHRGFRALEAF--VIALLLVIFGC 208          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_STAS1 (Probable manganese transport protein mntH OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=mntH PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.138e-23
Identity = 54/131 (41.22%), Postives = 85/131 (64.89%), Query Frame = 3
Query:  303 KKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            +KL+ F GPG L+++ ++DPGN    +Q GA  GY LL++++ ++L  +L+Q ++ R+G++TG  LA+  +        FV W +AE+A+I  DI EVIGSAIA+ +L    +PL  G +IT  D F+ LF
Sbjct:   29 QKLFSFLGPGLLVAVGYMDPGNWITSMQGGAQFGYILLFVILLSSLSAMLLQSMTIRLGISTGMDLAQATKHYLNKPVAFVFWIIAELAIIATDIAEVIGSAIALDLLFG--IPLLVGALITVFDVFLLLF 157          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_KLEP7 (Probable manganese transport protein mntH OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=mntH PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.138e-23
Identity = 50/123 (40.65%), Postives = 81/123 (65.85%), Query Frame = 3
Query:  324 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D+ E IG+AI  +++    + L  G ++T +  F+ L
Sbjct:   23 GPAFVAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQVLSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAIGFKLVLG--VSLLQGAVLTGVATFLIL 143          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_KLEP3 (Probable manganese transport protein mntH OS=Klebsiella pneumoniae (strain 342) GN=mntH PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.138e-23
Identity = 50/123 (40.65%), Postives = 81/123 (65.85%), Query Frame = 3
Query:  324 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D+ E IG+AI  +++    + L  G ++T +  F+ L
Sbjct:   23 GPAFVAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQVLSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAIGFKLVLG--VSLLQGAVLTGVATFLIL 143          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: SMF1_YEAST (Manganese transporter SMF1 OS=Saccharomyces cerevisiae GN=SMF1 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 5.352e-23
Identity = 59/155 (38.06%), Postives = 91/155 (58.71%), Query Frame = 3
Query:  318 FTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF*RLWSEE----LELFCCIIALWLIVAGCC 770
            F GPG ++S+A++DPGN    + +GA   +SLL +++ +  + + +Q L  ++G  TG  L+  CRE  P W  + L+F AE A+I  DI EVIG+AIA+ IL    +PL AGV IT +D F+ +F           + +F C +A  ++V G C
Sbjct:   79 FIGPGLMVSVAYIDPGNYSTAVDAGASNQFSLLCIILLSNFIAIFLQCLCIKLGSVTGLDLSRACREYLPRWLNWTLYFFAECAVIATDIAEVIGTAIALNILIK--VPLPAGVAITVVDVFLIMFTYKPGASSIRFIRIFECFVA--VLVVGVC 229          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_CITK8 (Probable manganese transport protein mntH OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=mntH PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 5.352e-23
Identity = 49/123 (39.84%), Postives = 80/123 (65.04%), Query Frame = 3
Query:  324 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+AT ++LAE  R+ YP    +  W  AE+  +  D+ E IG+AI  +++    + L  G ++T +  F+ L
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYKLLWVVVWANLMAMLIQVLSAKLGIATSKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAIGFKLILG--ISLLQGAVLTGIATFLIL 143          
The following BLAST results are available for this feature:
BLAST of FC932602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MNTH_VIBHB1.840e-2340.46Probable manganese transport protein mntH OS=Vibri... [more]
MNTH_SHIDS1.840e-2340.65Manganese transport protein mntH OS=Shigella dysen... [more]
MNTH_LACBR1.840e-2335.12Manganese transport protein mntH OS=Lactobacillus ... [more]
MNTH_ECO271.840e-2340.65Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_XYLFT2.402e-2337.42Probable manganese transport protein mntH OS=Xylel... [more]
MNTH_STAS13.138e-2341.22Probable manganese transport protein mntH OS=Staph... [more]
MNTH_KLEP73.138e-2340.65Probable manganese transport protein mntH OS=Klebs... [more]
MNTH_KLEP33.138e-2340.65Probable manganese transport protein mntH OS=Klebs... [more]
SMF1_YEAST5.352e-2338.06Manganese transporter SMF1 OS=Saccharomyces cerevi... [more]
MNTH_CITK85.352e-2339.84Probable manganese transport protein mntH OS=Citro... [more]

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Properties
Property NameValue
Genbank descriptionC34210D06EF PostHarveN Citrus clementina cDNA clone C34210D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932602 ID=FC932602; Name=FC932602; organism=Citrus clementina; type=EST; length=797bp
GCCGGCTCACCAGTCCTCAGAGGTGAGATCTGTGGAACAGAATCTACTGC
CGAGTTTGGAATATTCCGTGCGTAGATAAAACAAAGAAAGTGAAAATGGA
CTCCTCCGAAACCCGAGAAGGAGAAAGCGGGTCCAAAGACAGCAATGAAA
CCAACCGCCTCCTTCCAATACCGTCACCACCGTCCTCAACGGAGGACGAC
GAGGAAGTCGCGTTCGATTCACGAGAGAAAATCTTGATCGTCGACGCAGA
TTCAGCCTCCACGTTGAACGTTGACGGTGACCAAGTGCCGCCTTTTTCGT
GGAAAAAGCTTTGGTTATTCACTGGACCCGGTTTCTTAATGAGCATAGCG
TTTCTGGATCCGGGGAATCTGGAGGGGGATCTCCAATCGGGGGCGATAGC
AGGGTACTCGCTTCTTTGGTTGCTAATGTGGGCCACCCTCATGGGCTTGC
TTATTCAGCTGCTGTCGGCACGAGTAGGGGTGGCCACGGGGCGTCACTTG
GCAGAGCTGTGTAGAGAGGAGTACCCCAATTGGGCGCGATTCGTGTTGTG
GTTCATGGCTGAAGTGGCCTTGATTGGTGCCGATATTCAGGAAGTAATTG
GGAGTGCCATTGCTATCCAGATTTTGAGTCACGGGGTCTTGCCACTATGG
GCCGGTGTCATCATTACGGCGTTGGATTGTTTCATATTTTTATTTTAGAG
ACTATGGAGTGAGGAACTGGAGCTGTTTTGCTGTATAATTGCACTATGGC
TTATCGTTGCTGGATGTTGCGACCACACCAGTGAAAAAAAAAAAAAA
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