FC932602

Overview
NameFC932602
Unique NameFC932602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length797
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_LACSS (Probable manganese transport protein mntH OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=mntH PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.937e-21
Identity = 49/131 (37.40%), Postives = 84/131 (64.12%), Query Frame = 3
Query:  300 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            WK L  F GPG L+++ ++DPGN    +  GA   Y+L+ +++ + L+ +L+Q ++AR+G+ TG  LA++ R +        LW + E+A++  DI E+IGSAIA++++ +  +PL  GV+ITA D  + L
Sbjct:   40 WKTLMAFMGPGALVAVGYMDPGNWITSIAGGAQFAYTLISVILVSNLIAMLLQAMAARLGIVTGMDLAQMTRAKTGKKMGIFLWIVTELAIMATDIAEIIGSAIALELIFN--IPLLWGVLITAFDVLLLL 168          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_AERHH (Probable manganese transport protein mntH OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=mntH PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.836e-21
Identity = 45/112 (40.18%), Postives = 73/112 (65.18%), Query Frame = 3
Query:  324 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGV 659
            GP F+ +I ++DPGN   ++Q+G+  GY LLW+++WA LM +L+Q LSA++G+ TG++LAE  R+  P  A +  W  AE+  +  D+ E IG+A+  ++L    L   AG+
Sbjct:   25 GPAFIAAIGYIDPGNFATNIQAGSTFGYQLLWVVVWANLMAMLVQTLSAKLGIVTGKNLAEHIRDRLPKPAVWAYWVQAEIIAMATDLAEFIGAAVGFKLLLGVTLLEGAGI 136          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_STAAR (Probable manganese transport protein mntH OS=Staphylococcus aureus (strain MRSA252) GN=mntH PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.458e-20
Identity = 53/131 (40.46%), Postives = 81/131 (61.83%), Query Frame = 3
Query:  303 KKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            +K   F GPG L++  ++D GN    +Q GA  GY+LL+  + + L  +L+Q ++ R+G+ATG  LA++ R         + W +AE+A+I  DI EVIGSAIA+ +L +  +PL  G +IT LD F+ LF
Sbjct:   31 QKFLSFLGPGLLVAGGYMDSGNWITSMQGGAQYGYTLLFGNLISRLSAMLLQSMTVRLGIATGMDLAQMTRHYLSRPIAIIFWIIAELAIIATDIAEVIGSAIALNLLFN--IPLIVGALITVLDVFLLLF 159          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_CLOAB (Probable manganese transport protein mntH OS=Clostridium acetobutylicum GN=mntH PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.486e-20
Identity = 45/169 (26.63%), Postives = 96/169 (56.80%), Query Frame = 3
Query:  213 FDSREKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF*RLWSEEL 719
            ++ + K + ++  S+ T N+ G          L  F GP F++S+A++DPGN   ++  G+   Y+L+W+++W+ LM + +Q +SA++G+ATG  L E+C + +   A ++ W + E+  +  D+ E IG  + + +L    +P+    ++T +  FI ++   + +++
Sbjct:   11 YNIKHKTISLNRASSVTRNLKG----------LLKFLGPAFVVSVAYIDPGNFATNISGGSSFNYNLIWVILWSNLMAIFLQTMSAKLGIATGCSLPEMCAKVFSKRANWIFWIVGELGAMATDLAEFIGGTLGLYLLFR--IPMIYAGLLTGVLTFIIVYMEKYGQKM 167          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_THETN (Probable manganese transport protein mntH OS=Thermoanaerobacter tengcongensis GN=mntH PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.247e-20
Identity = 40/131 (30.53%), Postives = 80/131 (61.07%), Query Frame = 3
Query:  303 KKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            KK   + GP F++S+A++DPGN   ++  G++  Y L+W+++W+ ++ + +Q+ SA++G+ATG +L E+C   +P    + LW  AE+A +  D+ E +G  + + +L H  +P+     +T +  F  ++
Sbjct:   21 KKFLKYLGPAFIVSVAYVDPGNFATNISGGSLFDYHLIWVILWSNVIAIFLQIQSAKLGIATGYNLPEMCSIIFPRKWNWFLWITAELAAMATDLAEFLGGTMGLYLLFH--IPMTYAAFLTGVVTFAIVY 149          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_CHRSD (Probable manganese transport protein mntH OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=mntH PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.247e-20
Identity = 55/150 (36.67%), Postives = 90/150 (60.00%), Query Frame = 3
Query:  318 FTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF*RLWSEELELFCCII-ALWLIVAG 764
            F GP  + ++A++DPGN   ++++G+  GY+LLW+++ A LM +LIQ LSAR+G+ATG++L ++ R  YP    +  W  AE+  I  D+ E +G+A+A  +L    L L  G ++T    ++ L   L+     L   +I A+ L VAG
Sbjct:   35 FFGPALIAAVAYIDPGNFATNIEAGSRYGYTLLWVVLAANLMAMLIQTLSARLGLATGQNLPQVIRARYPRPLVWCYWVQAEIVAIATDLAEFLGAALAFHLLFG--LSLMEGALLTGTITYLAL--HLYRYGFRLMEILIGAMILAVAG 180          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: SMF2_YEAST (Manganese transporter SMF2 OS=Saccharomyces cerevisiae GN=SMF2 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.611e-19
Identity = 49/130 (37.69%), Postives = 79/130 (60.77%), Query Frame = 3
Query:  303 KKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            +K   F GPG ++S++++DPGN    + +G+   Y LL+ ++ +  M    Q L AR+G  TG  LA+ C++  P      L+ +AE+A+I  D+ EV+G+AI++ IL H  +PL  GVI+T +D  I L
Sbjct:   55 RKYARFIGPGLMVSVSYMDPGNYSTAVAAGSAHRYKLLFSVLVSNFMAAFWQYLCARLGAVTGLDLAQNCKKHLPFGLNITLYILAEMAIIATDLAEVVGTAISLNILFH--IPLALGVILTVVDVLIVL 182          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_MYCLE (Probable manganese transport protein mntH OS=Mycobacterium leprae GN=mntH PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.388e-17
Identity = 45/130 (34.62%), Postives = 74/130 (56.92%), Query Frame = 3
Query:  303 KKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            K  W   GP F+ +IA++DPGN+  ++ SGA  GY  LW+++ A ++  L+Q LSA++G+ TG+ L +   ++  +  R   W  AE+  +  D+ E++G AIA  IL    + L  G +IT     + L
Sbjct:   28 KTSWYLLGPAFVAAIAYVDPGNVAANVSSGAQFGYLQLWVVVVANVLAGLVQYLSAKLGLVTGQSLPQAISKQMSHPFRLGFWLQAELVAMATDVAEIVGGAIAFHILFR--VSLLLGGVITGTVSLLLL 155          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: EIN2_ARATH (Ethylene-insensitive protein 2 OS=Arabidopsis thaliana GN=EIN2 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.178e-16
Identity = 45/121 (37.19%), Postives = 70/121 (57.85%), Query Frame = 3
Query:  327 PGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIF 689
            P  L+S+ ++DPG    +++ GA  GY L+ + +      +L Q ++AR+ V TG+HLA++C EEY  W    L   AE + I  D+  V+G A A+ +L  GV  L  GV + A+D F+F
Sbjct:   24 PVLLVSVGYIDPGKWVANIEGGARFGYDLVAITLLFNFAAILCQYVAARISVVTGKHLAQICNEEYDKWTCMFLGIQAEFSAILLDLTMVVGVAHALNLL-FGV-ELSTGVFLAAMDAFLF 142          
The following BLAST results are available for this feature:
BLAST of FC932602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MNTH_LACSS2.937e-2137.40Probable manganese transport protein mntH OS=Lacto... [more]
MNTH_AERHH3.836e-2140.18Probable manganese transport protein mntH OS=Aerom... [more]
MNTH_STAAR1.458e-2040.46Probable manganese transport protein mntH OS=Staph... [more]
MNTH_CLOAB2.486e-2026.63Probable manganese transport protein mntH OS=Clost... [more]
MNTH_THETN3.247e-2030.53Probable manganese transport protein mntH OS=Therm... [more]
MNTH_CHRSD3.247e-2036.67Probable manganese transport protein mntH OS=Chrom... [more]
SMF2_YEAST1.611e-1937.69Manganese transporter SMF2 OS=Saccharomyces cerevi... [more]
MNTH_MYCLE4.388e-1734.62Probable manganese transport protein mntH OS=Mycob... [more]
EIN2_ARATH2.178e-1637.19Ethylene-insensitive protein 2 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC34210D06EF PostHarveN Citrus clementina cDNA clone C34210D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932602 ID=FC932602; Name=FC932602; organism=Citrus clementina; type=EST; length=797bp
GCCGGCTCACCAGTCCTCAGAGGTGAGATCTGTGGAACAGAATCTACTGC
CGAGTTTGGAATATTCCGTGCGTAGATAAAACAAAGAAAGTGAAAATGGA
CTCCTCCGAAACCCGAGAAGGAGAAAGCGGGTCCAAAGACAGCAATGAAA
CCAACCGCCTCCTTCCAATACCGTCACCACCGTCCTCAACGGAGGACGAC
GAGGAAGTCGCGTTCGATTCACGAGAGAAAATCTTGATCGTCGACGCAGA
TTCAGCCTCCACGTTGAACGTTGACGGTGACCAAGTGCCGCCTTTTTCGT
GGAAAAAGCTTTGGTTATTCACTGGACCCGGTTTCTTAATGAGCATAGCG
TTTCTGGATCCGGGGAATCTGGAGGGGGATCTCCAATCGGGGGCGATAGC
AGGGTACTCGCTTCTTTGGTTGCTAATGTGGGCCACCCTCATGGGCTTGC
TTATTCAGCTGCTGTCGGCACGAGTAGGGGTGGCCACGGGGCGTCACTTG
GCAGAGCTGTGTAGAGAGGAGTACCCCAATTGGGCGCGATTCGTGTTGTG
GTTCATGGCTGAAGTGGCCTTGATTGGTGCCGATATTCAGGAAGTAATTG
GGAGTGCCATTGCTATCCAGATTTTGAGTCACGGGGTCTTGCCACTATGG
GCCGGTGTCATCATTACGGCGTTGGATTGTTTCATATTTTTATTTTAGAG
ACTATGGAGTGAGGAACTGGAGCTGTTTTGCTGTATAATTGCACTATGGC
TTATCGTTGCTGGATGTTGCGACCACACCAGTGAAAAAAAAAAAAAA
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