FC932602

Overview
NameFC932602
Unique NameFC932602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length797
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: NRAM6_ARATH (Metal transporter Nramp6 OS=Arabidopsis thaliana GN=NRAMP6 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 5.705e-33
Identity = 67/132 (50.76%), Postives = 93/132 (70.45%), Query Frame = 3
Query:  297 SWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            SWK  + + GPGFL+SIA++DPGN E DLQSGA   Y LLW+++ A+   L+IQ L+A +GV TG+HLAE CR EY     F+LW +AE+A++  DI EVIG+A A+ +L +  +P+W GV++T L   I L
Sbjct:   34 SWKNFFSYLGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALVIQSLAANLGVVTGKHLAEHCRAEYSKVPNFMLWVVAEIAVVACDIPEVIGTAFALNMLFN--IPVWIGVLLTGLSTLILL 163          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: NRAM1_ARATH (Metal transporter Nramp1 OS=Arabidopsis thaliana GN=NRAMP1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.271e-32
Identity = 66/132 (50.00%), Postives = 92/132 (69.70%), Query Frame = 3
Query:  297 SWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            SWK  + + GPGFL+SIA++DPGN E DLQ+GA   Y LLW+++ A+   L+IQ L+A +GV TG+HLAE CR EY     F+LW +AE+A++  DI EVIG+A A+ +L    +P+W GV++T L   I L
Sbjct:   42 SWKNFFAYLGPGFLVSIAYIDPGNFETDLQAGAHYKYELLWIILVASCAALVIQSLAANLGVVTGKHLAEQCRAEYSKVPNFMLWVVAEIAVVACDIPEVIGTAFALNMLFS--IPVWIGVLLTGLSTLILL 171          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_RHILO (Probable manganese transport protein mntH OS=Rhizobium loti GN=mntH PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.130e-31
Identity = 71/157 (45.22%), Postives = 105/157 (66.88%), Query Frame = 3
Query:  300 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCF-IFLF*RLWSEELELFCCIIALWLIVAGC 767
            +++L+ F GPG+++S+ ++DPGN   DL  GA  GY+LL+++M + LM +L+Q L+AR+G+ATGR LA+ CR  YP    FVLW   E+A+I  D+ EVIG+AIA+++L    +PL  G I+TALD F + L        LE F  +IAL +I+  C
Sbjct:   42 FRRLFAFMGPGYMVSVGYMDPGNWATDLAGGAQFGYTLLFVIMLSNLMAILLQALAARLGIATGRDLAQACRAYYPRPVNFVLWIACELAIIACDLAEVIGTAIALKLLFG--IPLIGGAILTALDAFLVLLLMNKGFRYLEAF--VIALLIIIFSC 194          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_ANASP (Probable manganese transport protein mntH OS=Anabaena sp. (strain PCC 7120) GN=mntH PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.231e-28
Identity = 59/132 (44.70%), Postives = 90/132 (68.18%), Query Frame = 3
Query:  300 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            W+K+  + GPG+L+S+ ++DPGN   D+  G+  GY+LL +++ + LM +L+Q L  R+GVATGR LA+ CR+ +     F LW + E+A+   D+ E++GSAIA+Q+L   V+PL  GV ITALD  + LF
Sbjct:   26 WRKMLAYAGPGYLVSVGYIDPGNWATDIAGGSKFGYTLLTVILLSNLMAILLQSLCVRLGVATGRDLAQACRDYFSPKVSFCLWVLCEIAIAACDLAELLGSAIALQLLF--VIPLIWGVCITALDVLVLLF 155          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_XANAC (Probable manganese transport protein mntH OS=Xanthomonas axonopodis pv. citri GN=mntH PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.426e-28
Identity = 67/157 (42.68%), Postives = 98/157 (62.42%), Query Frame = 3
Query:  300 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALD-CFIFLF*RLWSEELELFCCIIALWLIVAGC 767
            W +L  F GPG+++S+ ++DPGN   DL  G+  GY LL +++ + LM +++Q LSAR+G+ATG  LA+ CR  YP      LW + E+A+I  D+ EVIG+AIA+++L    +PL  G IITA+D   + L        LE F  +IAL LI+  C
Sbjct:   35 WSRLLAFLGPGYMVSVGYMDPGNWATDLAGGSQFGYLLLSVILLSNLMAIVLQGLSARLGIATGLDLAQACRARYPRGVNLALWGICELAIIACDLAEVIGTAIALKLLFG--IPLTMGAIITAVDVVLVLLLMNRGFRALEAF--VIALLLIIFAC 187          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_BRAJA (Probable manganese transport protein mntH OS=Bradyrhizobium japonicum GN=mntH PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.608e-27
Identity = 65/157 (41.40%), Postives = 98/157 (62.42%), Query Frame = 3
Query:  300 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF*RLWSEELE-LFCCIIALWLIVAGC 767
            W++L  F GPG+L+S+ ++DPGN   DL  G+  GY+LL +++ + LM +L+Q L+AR+G+ T R LA+ CR  Y     F+LW   E A+I  D+ EVIG+AIA+++L    +PL  G +I ALD F+ L   L +     L   +IAL  ++A C
Sbjct:   41 WRRLLAFVGPGYLVSVGYMDPGNWATDLAGGSKFGYTLLSVILLSNLMAILLQSLAARLGIVTDRDLAQACRATYSPAVNFLLWLACEAAIIACDLAEVIGTAIALKLLFG--IPLIGGALIAALDAFLLLL--LMNRGFRFLEAFVIALLAVIAVC 193          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_XANCP (Probable manganese transport protein mntH OS=Xanthomonas campestris pv. campestris GN=mntH PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.109e-27
Identity = 66/157 (42.04%), Postives = 98/157 (62.42%), Query Frame = 3
Query:  300 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALD-CFIFLF*RLWSEELELFCCIIALWLIVAGC 767
            W +L  F GPG+++S+ ++DPGN   DL  G+  GY LL +++ + LM +++Q LSAR+G+ATG  LA+ CR  YP      LW + E+A+I  D+ EVIG+AIA+++L    +PL  G IITALD   + L        LE F  ++AL L++  C
Sbjct:   35 WFRLLAFLGPGYMVSVGYMDPGNWATDLAGGSQFGYLLLSVILLSNLMAIVLQGLSARLGIATGLDLAQACRARYPRGINLALWGLCELAIIACDLAEVIGTAIALKLLFG--IPLTLGAIITALDVVLVLLLMNRGFRALEAF--VMALLLVIFVC 187          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_PEDPA (Probable manganese transport protein mntH OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=mntH PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.979e-27
Identity = 70/182 (38.46%), Postives = 116/182 (63.74%), Query Frame = 3
Query:  225 EKILIVDADSASTLNVDGDQVPPFS--WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFI-FLF*RLWSEELE-LFCCIIALWLIV 758
            EK+  VD+ S   +N    +VP  +  WK L  ++GPGFL+++ ++DPGN    +  GA   Y+LL +++ ++L+ +L+Q +SAR+G+ TG+ LA+L RE       F+LW +AE+A++  DI E+IGS IA+++L H  +PL  G++ITA D  I  L  +L   ++E +   ++A+ LIV
Sbjct:    3 EKLDEVDSKSLDEIN-GSIKVPKNAGFWKTLMAYSGPGFLIAVGYMDPGNWITSIAGGAQFRYTLLSVILLSSLIAMLLQAMSARLGIVTGKDLAQLTRERTSKRVGFLLWIVAELAIMATDIAEIIGSGIALELLFH--IPLIIGILITAADVLILLLLMKLGFRKIEAIVATLVAVILIV 181          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_ACICJ (Probable manganese transport protein mntH OS=Acidiphilium cryptum (strain JF-5) GN=mntH PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.042e-26
Identity = 66/157 (42.04%), Postives = 99/157 (63.06%), Query Frame = 3
Query:  300 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCF-IFLF*RLWSEELELFCCIIALWLIVAGC 767
            W+   +F GP  + SIA++DPGN   ++Q+GA  GY LLW+++ A+L+ +L Q LSAR+G+ TGR+LAELCR+  P      +W ++E+A +  D+ E +G AI I +L+H  LPL AG+ IT +  + I L  R     +EL   I AL  ++A C
Sbjct:   28 WRNPLIFAGPAVVASIAYMDPGNFATNIQAGARYGYDLLWVVLLASLIAMLFQGLSARLGIVTGRNLAELCRDTLPPALTIPMWIISEIAAMATDLAEFLGGAIGIALLAH--LPLMAGMAITGIVTYGILLLDRRGFRPMEL--VIGALVGVIALC 180          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: NRAM2_DICDI (Natural resistance-associated macrophage protein 2 homolog OS=Dictyostelium discoideum GN=nramp2 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.322e-26
Identity = 62/150 (41.33%), Postives = 92/150 (61.33%), Query Frame = 3
Query:  294 FSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF*RLWS-EELELFCCII 740
            FS KKL  F GP   +S+ ++DPGN   DL+ G+  GY L+W+L+++ +M L +Q L  ++ + T   LA+ CR+EY       LW + E+A+I  D+ EVIG+AI + IL    LPL AGV IT+LD  +FL  + W   +LEL   ++
Sbjct:  145 FSIKKLKSFLGPALFISVGYMDPGNWATDLEGGSRFGYQLMWVLLFSNIMALFLQTLVIKLALVTKNDLAQQCRKEYSKTVNIFLWLILELAIISTDLAEVIGTAIGLNILFG--LPLIAGVAITSLDTLLFLAIQRWGIRKLELLILLL 292          
The following BLAST results are available for this feature:
BLAST of FC932602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
NRAM6_ARATH5.705e-3350.76Metal transporter Nramp6 OS=Arabidopsis thaliana G... [more]
NRAM1_ARATH1.271e-3250.00Metal transporter Nramp1 OS=Arabidopsis thaliana G... [more]
MNTH_RHILO3.130e-3145.22Probable manganese transport protein mntH OS=Rhizo... [more]
MNTH_ANASP4.231e-2844.70Probable manganese transport protein mntH OS=Anaba... [more]
MNTH_XANAC9.426e-2842.68Probable manganese transport protein mntH OS=Xanth... [more]
MNTH_BRAJA1.608e-2741.40Probable manganese transport protein mntH OS=Brady... [more]
MNTH_XANCP6.109e-2742.04Probable manganese transport protein mntH OS=Xanth... [more]
MNTH_PEDPA7.979e-2738.46Probable manganese transport protein mntH OS=Pedio... [more]
MNTH_ACICJ1.042e-2642.04Probable manganese transport protein mntH OS=Acidi... [more]
NRAM2_DICDI2.322e-2641.33Natural resistance-associated macrophage protein 2... [more]

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Properties
Property NameValue
Genbank descriptionC34210D06EF PostHarveN Citrus clementina cDNA clone C34210D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932602 ID=FC932602; Name=FC932602; organism=Citrus clementina; type=EST; length=797bp
GCCGGCTCACCAGTCCTCAGAGGTGAGATCTGTGGAACAGAATCTACTGC
CGAGTTTGGAATATTCCGTGCGTAGATAAAACAAAGAAAGTGAAAATGGA
CTCCTCCGAAACCCGAGAAGGAGAAAGCGGGTCCAAAGACAGCAATGAAA
CCAACCGCCTCCTTCCAATACCGTCACCACCGTCCTCAACGGAGGACGAC
GAGGAAGTCGCGTTCGATTCACGAGAGAAAATCTTGATCGTCGACGCAGA
TTCAGCCTCCACGTTGAACGTTGACGGTGACCAAGTGCCGCCTTTTTCGT
GGAAAAAGCTTTGGTTATTCACTGGACCCGGTTTCTTAATGAGCATAGCG
TTTCTGGATCCGGGGAATCTGGAGGGGGATCTCCAATCGGGGGCGATAGC
AGGGTACTCGCTTCTTTGGTTGCTAATGTGGGCCACCCTCATGGGCTTGC
TTATTCAGCTGCTGTCGGCACGAGTAGGGGTGGCCACGGGGCGTCACTTG
GCAGAGCTGTGTAGAGAGGAGTACCCCAATTGGGCGCGATTCGTGTTGTG
GTTCATGGCTGAAGTGGCCTTGATTGGTGCCGATATTCAGGAAGTAATTG
GGAGTGCCATTGCTATCCAGATTTTGAGTCACGGGGTCTTGCCACTATGG
GCCGGTGTCATCATTACGGCGTTGGATTGTTTCATATTTTTATTTTAGAG
ACTATGGAGTGAGGAACTGGAGCTGTTTTGCTGTATAATTGCACTATGGC
TTATCGTTGCTGGATGTTGCGACCACACCAGTGAAAAAAAAAAAAAA
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