FC932602

Overview
NameFC932602
Unique NameFC932602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length797
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_AGRT5 (Probable manganese transport protein mntH OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=mntH PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.172e-26
Identity = 62/161 (38.51%), Postives = 101/161 (62.73%), Query Frame = 3
Query:  297 SWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF*R----LWSEELELFCCIIALWLIVAGC 767
            ++++   F GPG+L+++ ++DPGN    L  G+  GY+LL + + + +M +++Q L AR+ +A+GR LA+ CR+ YP     VLW +AE+A+I  DI EVIG+AI + ++    +PL  GV+ITALD F+ L+ +     W E L     +I L  ++A C
Sbjct:   52 TFRRAMAFFGPGYLVAVGYMDPGNWATSLAGGSKFGYTLLAVALVSNIMAIVLQSLCARLAIASGRDLAQACRDAYPKPVAMVLWLLAEIAIIATDIAEVIGTAIGLNLIFG--IPLELGVLITALDVFLILYLQKLGFRWVEAL-----VITLLGVIAVC 205          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_RALSO (Probable manganese transport protein mntH OS=Ralstonia solanacearum GN=mntH PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.755e-26
Identity = 57/131 (43.51%), Postives = 89/131 (67.94%), Query Frame = 3
Query:  300 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            WKKL  F GPG L+S+ ++DPGN   D+++G+  GYSLL++++ ++L  +++Q LSAR+G+ TG+ LA L RE Y   A  V W +AE++++  D+ EV+G A+A  +L    +P+  GV +TALD  I L
Sbjct:   33 WKKLLRFAGPGLLVSVGYMDPGNWATDIEAGSRYGYSLLFVVLLSSLAAMVLQCLSARLGIVTGKDLARLSRERYRPGAVRVQWLLAELSIVACDLAEVLGCALAFHLLLG--VPILGGVALTALDTLIVL 161          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: NRAM1_RAT (Natural resistance-associated macrophage protein 1 OS=Rattus norvegicus GN=Slc11a1 PE=2 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 1.152e-25
Identity = 52/95 (54.74%), Postives = 72/95 (75.79%), Query Frame = 3
Query:  411 LLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            LLW+L+WAT++GLL Q L+AR+GV TG+ L E+C   YP   R +LW   E+A++G+D+QEVIG+AI+  +LS G +PLW GV+IT +D F FLF
Sbjct:   48 LLWVLLWATVLGLLCQRLAARLGVVTGKDLGEICHLYYPKVPRILLWLTIELAIVGSDMQEVIGTAISFNLLSAGRIPLWGGVLITIVDTFFFLF 142          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_BURCM (Probable manganese transport protein mntH OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=mntH PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.505e-25
Identity = 71/204 (34.80%), Postives = 114/204 (55.88%), Query Frame = 3
Query:  159 LLPIPSPPSSTEDDEEVAFDSREKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITAL-DCFIFLF*RLWSEELELFCCIIALWLIVAGC 767
            ++P+ S  SS     +++ D   +   V A+ A+   ++G +        L  F GP  + SI ++DPGN   ++Q+GA  GY LLW+++ A  + +L Q +SA++G+ TGR+LAELCRE +P    + +W  +E+A +  D+ E +G A+A  +L H  LPL+AG+I TAL  C I    +     LE    I AL  ++  C
Sbjct:    1 MIPVTSKSSSGFALPDLSTDRAHRA--VPAEGAARAALEGRRT---GIAALLPFVGPAVIASIGYMDPGNFATNIQAGAAYGYRLLWVVLAANAIAMLFQAMSAKLGIVTGRNLAELCREHFPAPIVWGMWIASEIAAMATDLAEFLGGALAFALLCH--LPLFAGMIATALATCAILALEKRGFRPLE--AAIAALVGVIGAC 195          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_BLOPB (Probable manganese transport protein mntH OS=Blochmannia pennsylvanicus (strain BPEN) GN=mntH PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.965e-25
Identity = 53/123 (43.09%), Postives = 84/123 (68.29%), Query Frame = 3
Query:  324 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA +M +LIQLLSA++G+ATG++LAE  R+++P    ++ W  AE+  +  D+ E IG+AI  +IL    +PL  G ++T L  F+ L
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGATFGYQLLWVVVWANIMAMLIQLLSAKLGIATGKNLAEHIRDQFPRSVVWMYWIQAEIIAMATDLAEFIGAAIGFKILLG--IPLLQGALLTGLITFLIL 143          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_PECCP (Probable manganese transport protein mntH OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=mntH PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.567e-25
Identity = 55/123 (44.72%), Postives = 84/123 (68.29%), Query Frame = 3
Query:  324 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            GP F+ +I ++DPGN   ++QSGA  GY+LLW+++WA LM +LIQLLSA++G+ATG++LAE  R+ +P  A +  W  AE+  +  D+ E IG+AI  ++L    + L  G I+TA+  F+ L
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQSGAAYGYTLLWVVVWANLMAMLIQLLSAKLGIATGKNLAEHIRDRFPRPAVWAYWVQAEIIAMATDLAEFIGAAIGFKLLLG--VSLLEGAILTAIATFLIL 143          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_GRABC (Probable manganese transport protein mntH OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=mntH PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.274e-24
Identity = 61/158 (38.61%), Postives = 95/158 (60.13%), Query Frame = 3
Query:  300 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCF-IFLF*RLWSEELELFCCIIALWLIVAGCC 770
            WK   LF GP  + SIA++DPGN   ++Q+G+  GY+LLW++  A L+ +L Q LSA++G+ATGR+L ELCR+ +       LW ++E+A +  D+ E +G AI + +L    LPL  G++ TA+  F + LF +     +EL   +I   +   G C
Sbjct:   35 WKTGLLFAGPAVIASIAYVDPGNFATNIQAGSRYGYTLLWVVAAANLIAMLFQALSAKLGIATGRNLPELCRDHFSRPLVIALWIISEIAAMATDLAEFLGGAIGLALLFR--LPLIIGMVATAMITFALLLFEKRGYRVMEL---VIGALVATIGLC 187          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_BRUSU (Probable manganese transport protein mntH OS=Brucella suis GN=mntH PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.664e-24
Identity = 65/183 (35.52%), Postives = 106/183 (57.92%), Query Frame = 3
Query:  159 LLPIPSPPSSTEDDEEVAFDS----REKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            ++P  S PS      EV F+     R +  + D      +N  G +     +++   F GPG+L+++ ++DPGN    L  G+  GY+LL +++ + LM +L+Q L  R+ VATGR LA+ CR+ YP +  + LW +AE+A+   D+ EVIG+AI + +L    +PL  GVI+TA+D  + L+
Sbjct:    1 MVPHGSCPSGAR---EVTFEGWRRERGEASMSDVHRTIRVNRSGSK-----FRRALSFFGPGYLVAVGYMDPGNWATSLAGGSRFGYALLSVVLLSNLMAVLLQALCTRLAVATGRDLAQACRDAYPRFLAWPLWLLAELAICATDLAEVIGTAIGLNLLFG--IPLEIGVILTAVDVLLVLY 173          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_BRUME (Probable manganese transport protein mntH OS=Brucella melitensis GN=mntH PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.664e-24
Identity = 65/183 (35.52%), Postives = 106/183 (57.92%), Query Frame = 3
Query:  159 LLPIPSPPSSTEDDEEVAFDS----REKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            ++P  S PS      EV F+     R +  + D      +N  G +     +++   F GPG+L+++ ++DPGN    L  G+  GY+LL +++ + LM +L+Q L  R+ VATGR LA+ CR+ YP +  + LW +AE+A+   D+ EVIG+AI + +L    +PL  GVI+TA+D  + L+
Sbjct:    1 MVPHGSCPSGAR---EVTFEGWRRERGEASMSDVHRTIRVNRSGSK-----FRRALSFFGPGYLVAVGYMDPGNWATSLAGGSRFGYALLSVVLLSNLMAVLLQALCTRLAVATGRDLAQACRDAYPRFLAWPLWLLAELAICATDLAEVIGTAIGLNLLFG--IPLEIGVILTAVDVLLVLY 173          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_YERPY (Probable manganese transport protein mntH OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=mntH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.838e-24
Identity = 52/123 (42.28%), Postives = 85/123 (69.11%), Query Frame = 3
Query:  324 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            GP F+ +IA++DPGN   ++Q+GA  GY+LLW+++WA +M +L+QLLSA++G+ATG++LAE  R+ +P    +  W  AE+ ++  D+ E IG+AI  ++L  GV  L  G ++T +  F+ L
Sbjct:   23 GPAFIAAIAYIDPGNFATNIQAGATFGYTLLWVVVWANVMAMLVQLLSAKLGIATGKNLAEHIRDRFPRPVVWAYWVQAEIIVMATDLAEFIGAAIGFKLL-FGV-TLLQGAVLTGIATFLIL 143          
The following BLAST results are available for this feature:
BLAST of FC932602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MNTH_AGRT55.172e-2638.51Probable manganese transport protein mntH OS=Agrob... [more]
MNTH_RALSO6.755e-2643.51Probable manganese transport protein mntH OS=Ralst... [more]
NRAM1_RAT1.152e-2554.74Natural resistance-associated macrophage protein 1... [more]
MNTH_BURCM1.505e-2534.80Probable manganese transport protein mntH OS=Burkh... [more]
MNTH_BLOPB1.965e-2543.09Probable manganese transport protein mntH OS=Bloch... [more]
MNTH_PECCP2.567e-2544.72Probable manganese transport protein mntH OS=Pecto... [more]
MNTH_GRABC1.274e-2438.61Probable manganese transport protein mntH OS=Granu... [more]
MNTH_BRUSU1.664e-2435.52Probable manganese transport protein mntH OS=Bruce... [more]
MNTH_BRUME1.664e-2435.52Probable manganese transport protein mntH OS=Bruce... [more]
MNTH_YERPY2.838e-2442.28Probable manganese transport protein mntH OS=Yersi... [more]

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Properties
Property NameValue
Genbank descriptionC34210D06EF PostHarveN Citrus clementina cDNA clone C34210D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932602 ID=FC932602; Name=FC932602; organism=Citrus clementina; type=EST; length=797bp
GCCGGCTCACCAGTCCTCAGAGGTGAGATCTGTGGAACAGAATCTACTGC
CGAGTTTGGAATATTCCGTGCGTAGATAAAACAAAGAAAGTGAAAATGGA
CTCCTCCGAAACCCGAGAAGGAGAAAGCGGGTCCAAAGACAGCAATGAAA
CCAACCGCCTCCTTCCAATACCGTCACCACCGTCCTCAACGGAGGACGAC
GAGGAAGTCGCGTTCGATTCACGAGAGAAAATCTTGATCGTCGACGCAGA
TTCAGCCTCCACGTTGAACGTTGACGGTGACCAAGTGCCGCCTTTTTCGT
GGAAAAAGCTTTGGTTATTCACTGGACCCGGTTTCTTAATGAGCATAGCG
TTTCTGGATCCGGGGAATCTGGAGGGGGATCTCCAATCGGGGGCGATAGC
AGGGTACTCGCTTCTTTGGTTGCTAATGTGGGCCACCCTCATGGGCTTGC
TTATTCAGCTGCTGTCGGCACGAGTAGGGGTGGCCACGGGGCGTCACTTG
GCAGAGCTGTGTAGAGAGGAGTACCCCAATTGGGCGCGATTCGTGTTGTG
GTTCATGGCTGAAGTGGCCTTGATTGGTGCCGATATTCAGGAAGTAATTG
GGAGTGCCATTGCTATCCAGATTTTGAGTCACGGGGTCTTGCCACTATGG
GCCGGTGTCATCATTACGGCGTTGGATTGTTTCATATTTTTATTTTAGAG
ACTATGGAGTGAGGAACTGGAGCTGTTTTGCTGTATAATTGCACTATGGC
TTATCGTTGCTGGATGTTGCGACCACACCAGTGAAAAAAAAAAAAAA
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