FC932602

Overview
NameFC932602
Unique NameFC932602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length797
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_YERPS (Probable manganese transport protein mntH OS=Yersinia pseudotuberculosis GN=mntH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.838e-24
Identity = 52/123 (42.28%), Postives = 85/123 (69.11%), Query Frame = 3 
Query:  324 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            GP F+ +IA++DPGN   ++Q+GA  GY+LLW+++WA +M +L+QLLSA++G+ATG++LAE  R+ +P    +  W  AE+ ++  D+ E IG+AI  ++L  GV  L  G ++T +  F+ L
Sbjct:   23 GPAFIAAIAYIDPGNFATNIQAGATFGYTLLWVVVWANVMAMLVQLLSAKLGIATGKNLAEHIRDRFPRPVVWAYWVQAEIIVMATDLAEFIGAAIGFKLL-FGV-TLLQGAVLTGIATFLIL 143
[Close]
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_YERPP (Probable manganese transport protein mntH OS=Yersinia pestis (strain Pestoides F) GN=mntH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.838e-24
Identity = 52/123 (42.28%), Postives = 85/123 (69.11%), Query Frame = 3 
Query:  324 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            GP F+ +IA++DPGN   ++Q+GA  GY+LLW+++WA +M +L+QLLSA++G+ATG++LAE  R+ +P    +  W  AE+ ++  D+ E IG+AI  ++L  GV  L  G ++T +  F+ L
Sbjct:   23 GPAFIAAIAYIDPGNFATNIQAGATFGYTLLWVVVWANVMAMLVQLLSAKLGIATGKNLAEHIRDRFPRPVVWAYWVQAEIIVMATDLAEFIGAAIGFKLL-FGV-TLLQGAVLTGIATFLIL 143
[Close]
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_YERPN (Probable manganese transport protein mntH OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=mntH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.838e-24
Identity = 52/123 (42.28%), Postives = 85/123 (69.11%), Query Frame = 3 
Query:  324 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            GP F+ +IA++DPGN   ++Q+GA  GY+LLW+++WA +M +L+QLLSA++G+ATG++LAE  R+ +P    +  W  AE+ ++  D+ E IG+AI  ++L  GV  L  G ++T +  F+ L
Sbjct:   23 GPAFIAAIAYIDPGNFATNIQAGATFGYTLLWVVVWANVMAMLVQLLSAKLGIATGKNLAEHIRDRFPRPVVWAYWVQAEIIVMATDLAEFIGAAIGFKLL-FGV-TLLQGAVLTGIATFLIL 143
[Close]
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_YERPE (Probable manganese transport protein mntH OS=Yersinia pestis GN=mntH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.838e-24
Identity = 52/123 (42.28%), Postives = 85/123 (69.11%), Query Frame = 3 
Query:  324 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            GP F+ +IA++DPGN   ++Q+GA  GY+LLW+++WA +M +L+QLLSA++G+ATG++LAE  R+ +P    +  W  AE+ ++  D+ E IG+AI  ++L  GV  L  G ++T +  F+ L
Sbjct:   23 GPAFIAAIAYIDPGNFATNIQAGATFGYTLLWVVVWANVMAMLVQLLSAKLGIATGKNLAEHIRDRFPRPVVWAYWVQAEIIVMATDLAEFIGAAIGFKLL-FGV-TLLQGAVLTGIATFLIL 143
[Close]
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_YERPB (Probable manganese transport protein mntH OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=mntH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.838e-24
Identity = 52/123 (42.28%), Postives = 85/123 (69.11%), Query Frame = 3 
Query:  324 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            GP F+ +IA++DPGN   ++Q+GA  GY+LLW+++WA +M +L+QLLSA++G+ATG++LAE  R+ +P    +  W  AE+ ++  D+ E IG+AI  ++L  GV  L  G ++T +  F+ L
Sbjct:   23 GPAFIAAIAYIDPGNFATNIQAGATFGYTLLWVVVWANVMAMLVQLLSAKLGIATGKNLAEHIRDRFPRPVVWAYWVQAEIIVMATDLAEFIGAAIGFKLL-FGV-TLLQGAVLTGIATFLIL 143
[Close]
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_YERPA (Probable manganese transport protein mntH OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=mntH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.838e-24
Identity = 52/123 (42.28%), Postives = 85/123 (69.11%), Query Frame = 3 
Query:  324 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            GP F+ +IA++DPGN   ++Q+GA  GY+LLW+++WA +M +L+QLLSA++G+ATG++LAE  R+ +P    +  W  AE+ ++  D+ E IG+AI  ++L  GV  L  G ++T +  F+ L
Sbjct:   23 GPAFIAAIAYIDPGNFATNIQAGATFGYTLLWVVVWANVMAMLVQLLSAKLGIATGKNLAEHIRDRFPRPVVWAYWVQAEIIVMATDLAEFIGAAIGFKLL-FGV-TLLQGAVLTGIATFLIL 143
[Close]
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_YERP3 (Probable manganese transport protein mntH OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=mntH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.838e-24
Identity = 52/123 (42.28%), Postives = 85/123 (69.11%), Query Frame = 3 
Query:  324 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            GP F+ +IA++DPGN   ++Q+GA  GY+LLW+++WA +M +L+QLLSA++G+ATG++LAE  R+ +P    +  W  AE+ ++  D+ E IG+AI  ++L  GV  L  G ++T +  F+ L
Sbjct:   23 GPAFIAAIAYIDPGNFATNIQAGATFGYTLLWVVVWANVMAMLVQLLSAKLGIATGKNLAEHIRDRFPRPVVWAYWVQAEIIVMATDLAEFIGAAIGFKLL-FGV-TLLQGAVLTGIATFLIL 143
[Close]
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_LISW6 (Probable manganese transport protein mntH OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=mntH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.838e-24
Identity = 56/132 (42.42%), Postives = 91/132 (68.94%), Query Frame = 3 
Query:  300 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            ++KL+ F GPG L+++ ++DPGN    +  G+  GY+LL +++ + ++ +L+Q L++++G+ TGR LA+   + +     FVLW +AE+A+I  DI EVIGSAIA+ +L  G+  +W GV ITALD F+ LF
Sbjct:   38 FRKLFAFMGPGALIAVGYVDPGNWATSIAGGSEFGYTLLSVILISNILAVLLQSLASKLGIVTGRDLAQASSDHFSKPFGFVLWILAELAIIATDIAEVIGSAIALNLL-FGIPLIW-GVCITALDIFLVLF 167
[Close]
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_LISMO (Probable manganese transport protein mntH OS=Listeria monocytogenes GN=mntH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.838e-24
Identity = 56/132 (42.42%), Postives = 91/132 (68.94%), Query Frame = 3 
Query:  300 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            ++KL+ F GPG L+++ ++DPGN    +  G+  GY+LL +++ + ++ +L+Q L++++G+ TGR LA+   + +     FVLW +AE+A+I  DI EVIGSAIA+ +L  G+  +W GV ITALD F+ LF
Sbjct:   38 FRKLFAFMGPGALIAVGYVDPGNWATSIAGGSEFGYTLLSVILISNILAVLLQSLASKLGIVTGRDLAQASSDHFSKPFGFVLWILAELAIIATDIAEVIGSAIALNLL-FGIPLIW-GVCITALDIFLVLF 167
[Close]
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_LISMH (Probable manganese transport protein mntH OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=mntH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.838e-24
Identity = 56/132 (42.42%), Postives = 91/132 (68.94%), Query Frame = 3 
Query:  300 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            ++KL+ F GPG L+++ ++DPGN    +  G+  GY+LL +++ + ++ +L+Q L++++G+ TGR LA+   + +     FVLW +AE+A+I  DI EVIGSAIA+ +L  G+  +W GV ITALD F+ LF
Sbjct:   38 FRKLFAFMGPGALIAVGYVDPGNWATSIAGGSEFGYTLLSVILISNILAVLLQSLASKLGIVTGRDLAQASSDHFSKPFGFVLWILAELAIIATDIAEVIGSAIALNLL-FGIPLIW-GVCITALDIFLVLF 167
The following BLAST results are available for this feature:
BLAST of FC932602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MNTH_YERPS2.838e-2442.28Probable manganese transport protein mntH OS=Yersi... [more]
MNTH_YERPP2.838e-2442.28Probable manganese transport protein mntH OS=Yersi... [more]
MNTH_YERPN2.838e-2442.28Probable manganese transport protein mntH OS=Yersi... [more]
MNTH_YERPE2.838e-2442.28Probable manganese transport protein mntH OS=Yersi... [more]
MNTH_YERPB2.838e-2442.28Probable manganese transport protein mntH OS=Yersi... [more]
MNTH_YERPA2.838e-2442.28Probable manganese transport protein mntH OS=Yersi... [more]
MNTH_YERP32.838e-2442.28Probable manganese transport protein mntH OS=Yersi... [more]
MNTH_LISW62.838e-2442.42Probable manganese transport protein mntH OS=Liste... [more]
MNTH_LISMO2.838e-2442.42Probable manganese transport protein mntH OS=Liste... [more]
MNTH_LISMH2.838e-2442.42Probable manganese transport protein mntH OS=Liste... [more]

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Properties
Property NameValue
Genbank descriptionC34210D06EF PostHarveN Citrus clementina cDNA clone C34210D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932602 ID=FC932602; Name=FC932602; organism=Citrus clementina; type=EST; length=797bp
GCCGGCTCACCAGTCCTCAGAGGTGAGATCTGTGGAACAGAATCTACTGC
CGAGTTTGGAATATTCCGTGCGTAGATAAAACAAAGAAAGTGAAAATGGA
CTCCTCCGAAACCCGAGAAGGAGAAAGCGGGTCCAAAGACAGCAATGAAA
CCAACCGCCTCCTTCCAATACCGTCACCACCGTCCTCAACGGAGGACGAC
GAGGAAGTCGCGTTCGATTCACGAGAGAAAATCTTGATCGTCGACGCAGA
TTCAGCCTCCACGTTGAACGTTGACGGTGACCAAGTGCCGCCTTTTTCGT
GGAAAAAGCTTTGGTTATTCACTGGACCCGGTTTCTTAATGAGCATAGCG
TTTCTGGATCCGGGGAATCTGGAGGGGGATCTCCAATCGGGGGCGATAGC
AGGGTACTCGCTTCTTTGGTTGCTAATGTGGGCCACCCTCATGGGCTTGC
TTATTCAGCTGCTGTCGGCACGAGTAGGGGTGGCCACGGGGCGTCACTTG
GCAGAGCTGTGTAGAGAGGAGTACCCCAATTGGGCGCGATTCGTGTTGTG
GTTCATGGCTGAAGTGGCCTTGATTGGTGCCGATATTCAGGAAGTAATTG
GGAGTGCCATTGCTATCCAGATTTTGAGTCACGGGGTCTTGCCACTATGG
GCCGGTGTCATCATTACGGCGTTGGATTGTTTCATATTTTTATTTTAGAG
ACTATGGAGTGAGGAACTGGAGCTGTTTTGCTGTATAATTGCACTATGGC
TTATCGTTGCTGGATGTTGCGACCACACCAGTGAAAAAAAAAAAAAA
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