FC932602

Overview
NameFC932602
Unique NameFC932602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length797
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_LISMF (Probable manganese transport protein mntH OS=Listeria monocytogenes serotype 4b (strain F2365) GN=mntH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.838e-24
Identity = 56/132 (42.42%), Postives = 91/132 (68.94%), Query Frame = 3
Query:  300 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            ++KL+ F GPG L+++ ++DPGN    +  G+  GY+LL +++ + ++ +L+Q L++++G+ TGR LA+   + +     FVLW +AE+A+I  DI EVIGSAIA+ +L  G+  +W GV ITALD F+ LF
Sbjct:   38 FRKLFAFMGPGALIAVGYVDPGNWATSIAGGSEFGYTLLSVILISNILAVLLQSLASKLGIVTGRDLAQASSDHFSKPFGFVLWILAELAIIATDIAEVIGSAIALNLL-FGIPLIW-GVCITALDIFLVLF 167          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_LISMC (Probable manganese transport protein mntH OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=mntH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.838e-24
Identity = 56/132 (42.42%), Postives = 91/132 (68.94%), Query Frame = 3
Query:  300 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            ++KL+ F GPG L+++ ++DPGN    +  G+  GY+LL +++ + ++ +L+Q L++++G+ TGR LA+   + +     FVLW +AE+A+I  DI EVIGSAIA+ +L  G+  +W GV ITALD F+ LF
Sbjct:   38 FRKLFAFMGPGALIAVGYVDPGNWATSIAGGSEFGYTLLSVILISNILAVLLQSLASKLGIVTGRDLAQASSDHFSKPFGFVLWILAELAIIATDIAEVIGSAIALNLL-FGIPLIW-GVCITALDIFLVLF 167          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_LISIN (Probable manganese transport protein mntH OS=Listeria innocua GN=mntH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.838e-24
Identity = 56/132 (42.42%), Postives = 91/132 (68.94%), Query Frame = 3
Query:  300 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF 695
            ++KL+ F GPG L+++ ++DPGN    +  G+  GY+LL +++ + ++ +L+Q L++++G+ TGR LA+   + +     FVLW +AE+A+I  DI EVIGSAIA+ +L  G+  +W GV ITALD F+ LF
Sbjct:   38 FRKLFAFMGPGALIAVGYVDPGNWATSIAGGSEFGYTLLSVILISNILAVLLQSLASKLGIVTGRDLAQASSDHFSKPFGFVLWILAELAIIATDIAEVIGSAIALNLL-FGIPLIW-GVCITALDIFLVLF 167          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_YERE8 (Probable manganese transport protein mntH OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=mntH PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.706e-24
Identity = 54/136 (39.71%), Postives = 89/136 (65.44%), Query Frame = 3
Query:  288 PPFSWKKLWL-FTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            PP + +++ L   GP F+ +I ++DPGN   ++Q+GA  GY+LLW+++WA  M +LIQLLSA++G+ATG++LAE  R+ +P  A +  W  AE+  +  D+ E IG+AI  ++L    + L  G ++T +  F+ L
Sbjct:   10 PPRTSRRIKLSLMGPAFIAAIGYIDPGNFATNIQAGASFGYTLLWVVVWANFMAMLIQLLSAKLGIATGKNLAEHIRDRFPRPAVWAYWVQAEIIAMATDLAEFIGAAIGFKLLLG--VTLLEGAVLTGIATFLIL 143          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_LACBA (Probable manganese transport protein mntH OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=mntH PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.706e-24
Identity = 54/131 (41.22%), Postives = 87/131 (66.41%), Query Frame = 3
Query:  300 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            W+ L  +TGPG L+++ ++DPGN    +  GA   Y+LL +++ ++L+ +L+Q +SAR+G+ TG+ LA+L RE       F LW + E+A++  DI E+IGSAIA+++L     PL  G+IITA+D  + L
Sbjct:   41 WRTLMAYTGPGALIAVGYMDPGNWITSIAGGAQYKYTLLTVVLLSSLVAMLLQAMSARLGIVTGKDLAQLTREHTGKRTGFALWIITELAIMATDIAEIIGSAIALKLLFG--FPLIVGIIITAMDVLVLL 169          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH2_PSEAE (Manganese transport protein mntH2 OS=Pseudomonas aeruginosa GN=mntH2 PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.706e-24
Identity = 59/156 (37.82%), Postives = 95/156 (60.90%), Query Frame = 3
Query:  300 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF*RLWSEELELFCCIIALWLIVAGC 767
            W++L  F GPG+L+++ ++DPGN   D+  GA  GY LL +++ ++LM +L+Q LSAR+G+A+G  LA+ CRE Y      +LW   E A+I  D+ EVIG+AIA+++L    LPL  G ++   D  + L   +   +  L   ++AL  ++  C
Sbjct:   29 WRRLLAFAGPGYLVAVGYMDPGNWATDVAGGAQLGYLLLSVILLSSLMAMLLQALSARLGIASGLDLAQACRERYSPSTCRLLWLACETAIIACDLAEVIGTAIALKLLFG--LPLAWGALLCVGDALLVLV-LIGRGQRPLEAFVVALLTLIFAC 181          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_XYLFA (Probable manganese transport protein mntH OS=Xylella fastidiosa GN=mntH PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.841e-24
Identity = 61/155 (39.35%), Postives = 96/155 (61.94%), Query Frame = 3
Query:  306 KLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALD-CFIFLF*RLWSEELELFCCIIALWLIVAGC 767
            +L  F GPG+++S+ ++DPGN    L  G+  GY LL +++ + +M +++Q L+AR+G+A+   LA+ CR  Y       LW + E+A+I  D+ EVIG+AIA+ +L  GV  +W GV+ITA+D   + L        LE F  +IAL L++ GC
Sbjct:   58 RLLAFLGPGYMVSVGYMDPGNWATGLAGGSRFGYMLLSVILLSNVMAIVLQALAARLGIASDMDLAQACRARYSRGTTLALWVVCELAIIACDLAEVIGTAIALNLLL-GVPIIW-GVVITAVDVVLVLLLMHRGFRALEAF--VIALLLVIFGC 208          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: PDT1_SCHPO (Manganese transporter pdt1 OS=Schizosaccharomyces pombe GN=pdt1 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.322e-24
Identity = 61/152 (40.13%), Postives = 93/152 (61.18%), Query Frame = 3
Query:  318 FTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLF*RLWSEE-----LELFCCIIALWLIV 758
            F GPGFL+++A++DPGN   DL +G+   Y LL+++  + L  + +Q L  R+G  TG  LA  CRE Y  +  +  + +AE+A+I  DI EVIG+A+A++IL H  +PL AGV+IT LD  + L    W  E     + +F   +AL ++V
Sbjct:   74 FIGPGFLIAVAYIDPGNYSTDLDAGSRFQYKLLFIVFLSNLFAVYLQSLCIRLGSVTGMDLARNCREHYNRYICWSFYVLAEIAIIATDIAEVIGTAVALKILMH--IPLVAGVVITILDVLLVLI--AWRPEGSMLSVRIFETAVALLVLV 221          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_DEIRA (Probable manganese transport protein mntH OS=Deinococcus radiodurans GN=mntH PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.257e-24
Identity = 63/174 (36.21%), Postives = 99/174 (56.90%), Query Frame = 3
Query:  171 PSPPSSTEDDEEVAFDSREKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            PS P    D  E   D+R         + +TL        P   +++  F GP  + SIA++DPGN   +++ GA  GYSLLW+++ A LM ++IQ LSA +G+A+GR+L EL RE +P    +  W  AE+  +  D+ E +G+A+AIQ+L+   LP++ G ++T +  F  L
Sbjct:    6 PSLPDDRPDPPEQHLDAR---------AGATLR---GTAGPRGVRRILPFLGPAVIASIAYMDPGNFATNIEGGARYGYSLLWVILAANLMAMVIQNLSANLGIASGRNLPELIRERWPRPLVWFYWIQAELVAMATDLAEFLGAALAIQLLTG--LPMFWGAVVTGVVTFWLL 165          
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_VEREI (Probable manganese transport protein mntH OS=Verminephrobacter eiseniae (strain EF01-2) GN=mntH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.078e-23
Identity = 48/119 (40.34%), Postives = 82/119 (68.91%), Query Frame = 3
Query:  318 FTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITAL 674
            F GP  ++S+A++DPGNL  ++Q+GA  GY+LLW+++ A ++ +L Q LSA++G+ TGR+LAELCRE +       +W ++E+A +  D+   +G AI + +L    +PL  G+++TA+
Sbjct:   39 FAGPAVVVSVAYMDPGNLATNIQAGARYGYALLWVVLLANVVAMLFQSLSAKLGIVTGRNLAELCRERFSRPVALAMWVVSEIAAMATDLAAFLGGAIGLSLLFR--MPLLGGMVVTAI 155          
The following BLAST results are available for this feature:
BLAST of FC932602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MNTH_LISMF2.838e-2442.42Probable manganese transport protein mntH OS=Liste... [more]
MNTH_LISMC2.838e-2442.42Probable manganese transport protein mntH OS=Liste... [more]
MNTH_LISIN2.838e-2442.42Probable manganese transport protein mntH OS=Liste... [more]
MNTH_YERE83.706e-2439.71Probable manganese transport protein mntH OS=Yersi... [more]
MNTH_LACBA3.706e-2441.22Probable manganese transport protein mntH OS=Lacto... [more]
MNTH2_PSEAE3.706e-2437.82Manganese transport protein mntH2 OS=Pseudomonas a... [more]
MNTH_XYLFA4.841e-2439.35Probable manganese transport protein mntH OS=Xylel... [more]
PDT1_SCHPO6.322e-2440.13Manganese transporter pdt1 OS=Schizosaccharomyces ... [more]
MNTH_DEIRA8.257e-2436.21Probable manganese transport protein mntH OS=Deino... [more]
MNTH_VEREI1.078e-2340.34Probable manganese transport protein mntH OS=Vermi... [more]

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Properties
Property NameValue
Genbank descriptionC34210D06EF PostHarveN Citrus clementina cDNA clone C34210D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932602 ID=FC932602; Name=FC932602; organism=Citrus clementina; type=EST; length=797bp
GCCGGCTCACCAGTCCTCAGAGGTGAGATCTGTGGAACAGAATCTACTGC
CGAGTTTGGAATATTCCGTGCGTAGATAAAACAAAGAAAGTGAAAATGGA
CTCCTCCGAAACCCGAGAAGGAGAAAGCGGGTCCAAAGACAGCAATGAAA
CCAACCGCCTCCTTCCAATACCGTCACCACCGTCCTCAACGGAGGACGAC
GAGGAAGTCGCGTTCGATTCACGAGAGAAAATCTTGATCGTCGACGCAGA
TTCAGCCTCCACGTTGAACGTTGACGGTGACCAAGTGCCGCCTTTTTCGT
GGAAAAAGCTTTGGTTATTCACTGGACCCGGTTTCTTAATGAGCATAGCG
TTTCTGGATCCGGGGAATCTGGAGGGGGATCTCCAATCGGGGGCGATAGC
AGGGTACTCGCTTCTTTGGTTGCTAATGTGGGCCACCCTCATGGGCTTGC
TTATTCAGCTGCTGTCGGCACGAGTAGGGGTGGCCACGGGGCGTCACTTG
GCAGAGCTGTGTAGAGAGGAGTACCCCAATTGGGCGCGATTCGTGTTGTG
GTTCATGGCTGAAGTGGCCTTGATTGGTGCCGATATTCAGGAAGTAATTG
GGAGTGCCATTGCTATCCAGATTTTGAGTCACGGGGTCTTGCCACTATGG
GCCGGTGTCATCATTACGGCGTTGGATTGTTTCATATTTTTATTTTAGAG
ACTATGGAGTGAGGAACTGGAGCTGTTTTGCTGTATAATTGCACTATGGC
TTATCGTTGCTGGATGTTGCGACCACACCAGTGAAAAAAAAAAAAAA
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