FC932602

Overview
NameFC932602
Unique NameFC932602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length797
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_ECOLU (Manganese transport protein mntH OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=mntH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.078e-23
Identity = 50/123 (40.65%), Postives = 81/123 (65.85%), Query Frame = 3 
Query:  324 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D+ E IG+AI  +++    + L  G ++T +  F+ L
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAIGFKLILG--VSLLQGAVLTGIATFLIL 143
[Close]
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_ECOLI (Manganese transport protein mntH OS=Escherichia coli (strain K12) GN=mntH PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.078e-23
Identity = 50/123 (40.65%), Postives = 81/123 (65.85%), Query Frame = 3 
Query:  324 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D+ E IG+AI  +++    + L  G ++T +  F+ L
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAIGFKLILG--VSLLQGAVLTGIATFLIL 143
[Close]
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_ECOLC (Manganese transport protein mntH OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=mntH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.078e-23
Identity = 50/123 (40.65%), Postives = 81/123 (65.85%), Query Frame = 3 
Query:  324 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D+ E IG+AI  +++    + L  G ++T +  F+ L
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAIGFKLILG--VSLLQGAVLTGIATFLIL 143
[Close]
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_ECOL6 (Manganese transport protein mntH OS=Escherichia coli O6 GN=mntH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.078e-23
Identity = 50/123 (40.65%), Postives = 81/123 (65.85%), Query Frame = 3 
Query:  324 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D+ E IG+AI  +++    + L  G ++T +  F+ L
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAIGFKLILG--VSLLQGAVLTGIATFLIL 143
[Close]
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_ECOL5 (Manganese transport protein mntH OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=mntH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.078e-23
Identity = 50/123 (40.65%), Postives = 81/123 (65.85%), Query Frame = 3 
Query:  324 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D+ E IG+AI  +++    + L  G ++T +  F+ L
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAIGFKLILG--VSLLQGAVLTGIATFLIL 143
[Close]
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_ECOK1 (Manganese transport protein mntH OS=Escherichia coli O1:K1 / APEC GN=mntH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.078e-23
Identity = 50/123 (40.65%), Postives = 81/123 (65.85%), Query Frame = 3 
Query:  324 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D+ E IG+AI  +++    + L  G ++T +  F+ L
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAIGFKLILG--VSLLQGAVLTGIATFLIL 143
[Close]
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_ECOHS (Manganese transport protein mntH OS=Escherichia coli O9:H4 (strain HS) GN=mntH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.078e-23
Identity = 50/123 (40.65%), Postives = 81/123 (65.85%), Query Frame = 3 
Query:  324 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D+ E IG+AI  +++    + L  G ++T +  F+ L
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAIGFKLILG--VSLLQGAVLTGIATFLIL 143
[Close]
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_ECODH (Manganese transport protein mntH OS=Escherichia coli (strain K12 / DH10B) GN=mntH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.078e-23
Identity = 50/123 (40.65%), Postives = 81/123 (65.85%), Query Frame = 3 
Query:  324 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D+ E IG+AI  +++    + L  G ++T +  F+ L
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAIGFKLILG--VSLLQGAVLTGIATFLIL 143
[Close]
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_ECOBW (Manganese transport protein mntH OS=Escherichia coli (strain K12 / BW2952) GN=mntH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.078e-23
Identity = 50/123 (40.65%), Postives = 81/123 (65.85%), Query Frame = 3 
Query:  324 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D+ E IG+AI  +++    + L  G ++T +  F+ L
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAIGFKLILG--VSLLQGAVLTGIATFLIL 143
[Close]
BLAST of FC932602 vs. ExPASy Swiss-Prot
Match: MNTH_ECO8A (Manganese transport protein mntH OS=Escherichia coli O8 (strain IAI1) GN=mntH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.078e-23
Identity = 50/123 (40.65%), Postives = 81/123 (65.85%), Query Frame = 3 
Query:  324 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFL 692
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D+ E IG+AI  +++    + L  G ++T +  F+ L
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAIGFKLILG--VSLLQGAVLTGIATFLIL 143
The following BLAST results are available for this feature:
BLAST of FC932602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MNTH_ECOLU1.078e-2340.65Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_ECOLI1.078e-2340.65Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_ECOLC1.078e-2340.65Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_ECOL61.078e-2340.65Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_ECOL51.078e-2340.65Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_ECOK11.078e-2340.65Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_ECOHS1.078e-2340.65Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_ECODH1.078e-2340.65Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_ECOBW1.078e-2340.65Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_ECO8A1.078e-2340.65Manganese transport protein mntH OS=Escherichia co... [more]

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Properties
Property NameValue
Genbank descriptionC34210D06EF PostHarveN Citrus clementina cDNA clone C34210D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932602 ID=FC932602; Name=FC932602; organism=Citrus clementina; type=EST; length=797bp
GCCGGCTCACCAGTCCTCAGAGGTGAGATCTGTGGAACAGAATCTACTGC
CGAGTTTGGAATATTCCGTGCGTAGATAAAACAAAGAAAGTGAAAATGGA
CTCCTCCGAAACCCGAGAAGGAGAAAGCGGGTCCAAAGACAGCAATGAAA
CCAACCGCCTCCTTCCAATACCGTCACCACCGTCCTCAACGGAGGACGAC
GAGGAAGTCGCGTTCGATTCACGAGAGAAAATCTTGATCGTCGACGCAGA
TTCAGCCTCCACGTTGAACGTTGACGGTGACCAAGTGCCGCCTTTTTCGT
GGAAAAAGCTTTGGTTATTCACTGGACCCGGTTTCTTAATGAGCATAGCG
TTTCTGGATCCGGGGAATCTGGAGGGGGATCTCCAATCGGGGGCGATAGC
AGGGTACTCGCTTCTTTGGTTGCTAATGTGGGCCACCCTCATGGGCTTGC
TTATTCAGCTGCTGTCGGCACGAGTAGGGGTGGCCACGGGGCGTCACTTG
GCAGAGCTGTGTAGAGAGGAGTACCCCAATTGGGCGCGATTCGTGTTGTG
GTTCATGGCTGAAGTGGCCTTGATTGGTGCCGATATTCAGGAAGTAATTG
GGAGTGCCATTGCTATCCAGATTTTGAGTCACGGGGTCTTGCCACTATGG
GCCGGTGTCATCATTACGGCGTTGGATTGTTTCATATTTTTATTTTAGAG
ACTATGGAGTGAGGAACTGGAGCTGTTTTGCTGTATAATTGCACTATGGC
TTATCGTTGCTGGATGTTGCGACCACACCAGTGAAAAAAAAAAAAAA
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