GH733308

Overview
NameGH733308
Unique NameGH733308
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length293
Libraries
Library NameType
Citrus clementina pistils cDNA-AFLP librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: PDR12_ORYSJ (Pleiotropic drug resistance protein 12 OS=Oryza sativa subsp. japonica GN=PDR12 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.923e-30
Identity = 68/86 (79.07%), Postives = 71/86 (82.56%), Query Frame = -3
Query:   16 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 273
            L+DALVGLPG+ GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD              VDTGRTVVCTIHQPSIDIFEAFDE+LL
Sbjct: 1038 LKDALVGLPGITGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1123          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: PDR7_ORYSJ (Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.512e-30
Identity = 69/86 (80.23%), Postives = 70/86 (81.40%), Query Frame = -3
Query:   16 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 273
            LR ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD              VDTGRTVVCTIHQPSIDIFEAFDE+ L
Sbjct:  985 LRGALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1070          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: PDR5_ORYSJ (Pleiotropic drug resistance protein 5 OS=Oryza sativa subsp. japonica GN=PDR5 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 4.284e-30
Identity = 68/86 (79.07%), Postives = 72/86 (83.72%), Query Frame = -3
Query:   16 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 273
            LRDALVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD              V+TGRTVVCTIHQPSIDIFE+FDE+LL
Sbjct:  991 LRDALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFESFDELLL 1076          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: PDR2_NICPL (Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.284e-30
Identity = 69/88 (78.41%), Postives = 72/88 (81.82%), Query Frame = -3
Query:   16 KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 279
            K LR+ALVGLPGV+GLSTEQRKRLT AVELVANPSIIFMDEPTSGLD              VDTGRTVVCTIHQPSIDIFEAFDE+LL
Sbjct:  996 KLLRNALVGLPGVDGLSTEQRKRLTTAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRKTVDTGRTVVCTIHQPSIDIFEAFDELLL 1083          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: AB36G_ARATH (ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.284e-30
Identity = 67/86 (77.91%), Postives = 71/86 (82.56%), Query Frame = -3
Query:   16 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 273
            LRD++VGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD              VDTGRTVVCTIHQPSIDIFEAFDE++L
Sbjct: 1006 LRDSIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELML 1091          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: AB29G_ARATH (ABC transporter G family member 29 OS=Arabidopsis thaliana GN=ABCG29 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 4.284e-30
Identity = 67/86 (77.91%), Postives = 71/86 (82.56%), Query Frame = -3
Query:   16 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 273
            L+DA+VGLPG+ GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD              VDTGRTVVCTIHQPSIDIFEAFDE+LL
Sbjct:  953 LKDAVVGLPGITGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1038          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.595e-30
Identity = 68/87 (78.16%), Postives = 70/87 (80.46%), Query Frame = -3
Query:   16 PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 276
            PLR ALVGLPG +GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD              VDTGRTVVCTIHQPSIDIFEAFDE+ L
Sbjct:  963 PLRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1049          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: AB31G_ARATH (ABC transporter G family member 31 OS=Arabidopsis thaliana GN=ABCG31 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.126e-29
Identity = 68/86 (79.07%), Postives = 69/86 (80.23%), Query Frame = -3
Query:   16 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 273
            LR ALVGLPG  GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD              VDTGRTVVCTIHQPSIDIFEAFDE+LL
Sbjct:  965 LRYALVGLPGTTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1050          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: TUR2_SPIPO (Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.777e-29
Identity = 67/86 (77.91%), Postives = 69/86 (80.23%), Query Frame = -3
Query:   16 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 273
            LR +LVGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD              VDTGRTVVCTIHQPSIDIFEAFDE+ L
Sbjct:  982 LRGSLVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1067          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.627e-29
Identity = 67/86 (77.91%), Postives = 70/86 (81.40%), Query Frame = -3
Query:   16 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 273
            LR ALVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD              V+TGRTVVCTIHQPSIDIFEAFDE+ L
Sbjct:  991 LRGALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFL 1076          
The following BLAST results are available for this feature:
BLAST of GH733308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
PDR12_ORYSJ1.923e-3079.07Pleiotropic drug resistance protein 12 OS=Oryza sa... [more]
PDR7_ORYSJ2.512e-3080.23Putative pleiotropic drug resistance protein 7 OS=... [more]
PDR5_ORYSJ4.284e-3079.07Pleiotropic drug resistance protein 5 OS=Oryza sat... [more]
PDR2_NICPL4.284e-3078.41Pleiotropic drug resistance protein 2 OS=Nicotiana... [more]
AB36G_ARATH4.284e-3077.91ABC transporter G family member 36 OS=Arabidopsis ... [more]
AB29G_ARATH4.284e-3077.91ABC transporter G family member 29 OS=Arabidopsis ... [more]
AB40G_ARATH5.595e-3078.16ABC transporter G family member 40 OS=Arabidopsis ... [more]
AB31G_ARATH2.126e-2979.07ABC transporter G family member 31 OS=Arabidopsis ... [more]
TUR2_SPIPO2.777e-2977.91Pleiotropic drug resistance protein TUR2 OS=Spirod... [more]
PDR4_ORYSJ3.627e-2977.91Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionU_108 Citrus clementina pistils cDNA-AFLP library Citrus clementina cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GH733308 ID=GH733308; Name=GH733308; organism=Citrus clementina; type=EST; length=293bp
GACTGCGTACCAATTCAGCAATACCTCATCAAATGCTTCAAAAATGTCTA
TGCTTGGCTGATGAATTGTGCACACAACCGTTCTCCCTGTATCCACTGTA
TTTCTAACCGTACGCACGACAATAGCAGCTGCTCTAGCATCAAGGCCAGA
TGTTGGCTCGTCCATGAAGATGATTGAAGGGTTAGCAACCAATTCTACAG
CAATTGTCAATCTCTTCCTTTGCTCTGTTGAAAGACCATTTACTCCTGGA
AGGCCAACCAAAGCATCCCTCAATGGTTTACTCAGGACTCATC
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