GH733308

Overview
NameGH733308
Unique NameGH733308
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length293
Libraries
Library NameType
Citrus clementina pistils cDNA-AFLP librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: PDR6_ORYSJ (Pleiotropic drug resistance protein 6 OS=Oryza sativa subsp. japonica GN=PDR6 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 1.800e-28
Identity = 64/85 (75.29%), Postives = 69/85 (81.18%), Query Frame = -3
Query:   19 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVL 273
            L  ALVGLPGVNGLSTEQRKRLTIAVELVANPSI+FMDEPTSGLD              V+TGRT+VCTIHQPSIDIFE+FDE+L
Sbjct:  963 LSGALVGLPGVNGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARSAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELL 1047          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: PDR3_TOBAC (Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.010e-28
Identity = 61/86 (70.93%), Postives = 69/86 (80.23%), Query Frame = -3
Query:   16 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 273
            ++  LVG+PGV+GLSTEQRKRLTIAVELVANPSIIFMDEPT+GLD               DTGRT+VCTIHQPSIDIFEAFDE++L
Sbjct:  986 IKGMLVGMPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARSAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDELIL 1071          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: AB37G_ARATH (ABC transporter G family member 37 OS=Arabidopsis thaliana GN=ABCG37 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.237e-28
Identity = 61/86 (70.93%), Postives = 70/86 (81.40%), Query Frame = -3
Query:   16 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 273
            ++D+LVG+ GV+GLSTEQRKRLTIAVELVANPSIIFMDEPT+GLD               DTGRT+VCTIHQPSIDIFEAFDE++L
Sbjct:  989 IKDSLVGVTGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDELVL 1074          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: AB32G_ARATH (ABC transporter G family member 32 OS=Arabidopsis thaliana GN=ABCG32 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.840e-28
Identity = 63/85 (74.12%), Postives = 69/85 (81.18%), Query Frame = -3
Query:   19 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVL 273
            L  ALVGLPGV+GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLD              V+TGRT+VCTIHQPSIDIFE+FDE+L
Sbjct:  957 LSGALVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELL 1041          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: AB42G_ARATH (ABC transporter G family member 42 OS=Arabidopsis thaliana GN=ABCG42 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.933e-28
Identity = 58/86 (67.44%), Postives = 71/86 (82.56%), Query Frame = -3
Query:   16 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 273
            ++D++VG+PG++GL+TEQRKRLTIAVELV+NPSIIFMDEPT+GLD               +TGRTVVCTIHQPSIDIFEAFDE++L
Sbjct:  931 IKDSIVGIPGISGLTTEQRKRLTIAVELVSNPSIIFMDEPTTGLDARAAAIVMRAVKNIAETGRTVVCTIHQPSIDIFEAFDELIL 1016          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: PDR13_ORYSJ (Pleiotropic drug resistance protein 13 OS=Oryza sativa subsp. japonica GN=PDR13 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.167e-27
Identity = 65/86 (75.58%), Postives = 68/86 (79.07%), Query Frame = -3
Query:   16 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 273
            +R ALVG  G+ GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD              VDTGRTVVCTIHQPSIDIFEAFDE+LL
Sbjct:  977 IRYALVGKQGLTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1062          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: AB41G_ARATH (ABC transporter G family member 41 OS=Arabidopsis thaliana GN=ABCG41 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.524e-27
Identity = 58/86 (67.44%), Postives = 70/86 (81.40%), Query Frame = -3
Query:   16 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 273
            ++D++VGLPG++GLSTEQRKRLTIAVELV+NPSIIF+DEPT+GLD               +TGRTVVCTIHQPSIDIFE FDE++L
Sbjct:  936 IKDSMVGLPGISGLSTEQRKRLTIAVELVSNPSIIFLDEPTTGLDARAAAIVMRAVKNVAETGRTVVCTIHQPSIDIFETFDELIL 1021          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: AB38G_ARATH (ABC transporter G family member 38 OS=Arabidopsis thaliana GN=ABCG38 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.990e-27
Identity = 62/88 (70.45%), Postives = 69/88 (78.41%), Query Frame = -3
Query:   16 KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 279
            K LR+ LVG  G++GLSTEQRKR+TIAVELVANPSI+FMDEPTSGLD              VDTGRTVVCTIHQPSIDIFE+FDE+ L
Sbjct:  958 KALREMLVGYVGISGLSTEQRKRMTIAVELVANPSILFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFL 1045          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: AB30G_ARATH (ABC transporter G family member 30 OS=Arabidopsis thaliana GN=ABCG30 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 1.990e-27
Identity = 59/86 (68.60%), Postives = 69/86 (80.23%), Query Frame = -3
Query:   16 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 273
            ++D++VGLPG++GLS EQRKRLTIAVELVANPSIIFMDEPT+GLD               +TGRTVVCTIHQPSIDIFE FDE++L
Sbjct:  939 IKDSVVGLPGISGLSIEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAETGRTVVCTIHQPSIDIFETFDELIL 1024          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: AB43G_ARATH (ABC transporter G family member 43 OS=Arabidopsis thaliana GN=ABCG43 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.790e-27
Identity = 57/86 (66.28%), Postives = 70/86 (81.40%), Query Frame = -3
Query:   16 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 273
            ++D+LVG+PG++G++ EQRKRLTIAVELV+NPSIIFMDEPT+GLD               +TGRTVVCTIHQPSIDIFEAFDE++L
Sbjct:  929 IKDSLVGVPGISGVTAEQRKRLTIAVELVSNPSIIFMDEPTTGLDARAAAIVMRAVKNIAETGRTVVCTIHQPSIDIFEAFDELIL 1014          
The following BLAST results are available for this feature:
BLAST of GH733308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
PDR6_ORYSJ1.800e-2875.29Pleiotropic drug resistance protein 6 OS=Oryza sat... [more]
PDR3_TOBAC4.010e-2870.93Pleiotropic drug resistance protein 3 OS=Nicotiana... [more]
AB37G_ARATH5.237e-2870.93ABC transporter G family member 37 OS=Arabidopsis ... [more]
AB32G_ARATH6.840e-2874.12ABC transporter G family member 32 OS=Arabidopsis ... [more]
AB42G_ARATH8.933e-2867.44ABC transporter G family member 42 OS=Arabidopsis ... [more]
PDR13_ORYSJ1.167e-2775.58Pleiotropic drug resistance protein 13 OS=Oryza sa... [more]
AB41G_ARATH1.524e-2767.44ABC transporter G family member 41 OS=Arabidopsis ... [more]
AB38G_ARATH1.990e-2770.45ABC transporter G family member 38 OS=Arabidopsis ... [more]
AB30G_ARATH1.990e-2768.60ABC transporter G family member 30 OS=Arabidopsis ... [more]
AB43G_ARATH5.790e-2766.28ABC transporter G family member 43 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionU_108 Citrus clementina pistils cDNA-AFLP library Citrus clementina cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GH733308 ID=GH733308; Name=GH733308; organism=Citrus clementina; type=EST; length=293bp
GACTGCGTACCAATTCAGCAATACCTCATCAAATGCTTCAAAAATGTCTA
TGCTTGGCTGATGAATTGTGCACACAACCGTTCTCCCTGTATCCACTGTA
TTTCTAACCGTACGCACGACAATAGCAGCTGCTCTAGCATCAAGGCCAGA
TGTTGGCTCGTCCATGAAGATGATTGAAGGGTTAGCAACCAATTCTACAG
CAATTGTCAATCTCTTCCTTTGCTCTGTTGAAAGACCATTTACTCCTGGA
AGGCCAACCAAAGCATCCCTCAATGGTTTACTCAGGACTCATC
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