GH733308

Overview
NameGH733308
Unique NameGH733308
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length293
Libraries
Library NameType
Citrus clementina pistils cDNA-AFLP librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: AB33G_ARATH (ABC transporter G family member 33 OS=Arabidopsis thaliana GN=ABCG33 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.790e-27
Identity = 59/86 (68.60%), Postives = 69/86 (80.23%), Query Frame = -3
Query:   16 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 273
            ++DALVG+ GV+GLSTEQRKRLT+AVELVANPSIIFMDEPT+GLD               +TGRT+VCTIHQPSI IFEAFDE++L
Sbjct:  952 IKDALVGVAGVSGLSTEQRKRLTVAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAETGRTIVCTIHQPSIHIFEAFDELVL 1037          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: ABCGH_DICDI (ABC transporter G family member 17 OS=Dictyostelium discoideum GN=abcG17-1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.185e-17
Identity = 49/90 (54.44%), Postives = 57/90 (63.33%), Query Frame = -3
Query:   16 KPLRDALVGL--PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 279
            K L DAL+G    GV G+S E+RKRLTI VELVA P I+F+DEPTSGLD               D G  +VCTIHQPS  +FE FD +LL
Sbjct:  965 KHLGDALIGTLETGV-GISVEERKRLTIGVELVAKPQILFLDEPTSGLDAQSSYNIIKFIRKLADAGMPLVCTIHQPSSVLFEHFDRILL 1053          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: ABCGE_DICDI (ABC transporter G family member 14 OS=Dictyostelium discoideum GN=abcG14 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.185e-17
Identity = 49/90 (54.44%), Postives = 57/90 (63.33%), Query Frame = -3
Query:   16 KPLRDALVGL--PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 279
            K L DAL+G    GV G+S E+RKRLTI VELVA P I+F+DEPTSGLD               D G  +VCTIHQPS  +FE FD +LL
Sbjct:  932 KHLGDALIGTLETGV-GISVEERKRLTIGVELVAKPQILFLDEPTSGLDAQSSYNIIKFIRKLADAGMPLVCTIHQPSSVLFEHFDRILL 1020          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: ABCGB_DICDI (ABC transporter G family member 11 OS=Dictyostelium discoideum GN=abcG11 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.185e-17
Identity = 49/90 (54.44%), Postives = 57/90 (63.33%), Query Frame = -3
Query:   16 KPLRDALVGL--PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 279
            K L DAL+G    GV G+S E+RKRLTI VELVA P I+F+DEPTSGLD               D G  +VCTIHQPS  +FE FD +LL
Sbjct:  935 KHLGDALIGTLETGV-GISVEERKRLTIGVELVAKPQILFLDEPTSGLDAQSSYNIIKFIRKLADAGMPLVCTIHQPSSVLFEHFDRILL 1023          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: ABCG9_DICDI (ABC transporter G family member 9 OS=Dictyostelium discoideum GN=abcG9 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.185e-17
Identity = 50/90 (55.56%), Postives = 57/90 (63.33%), Query Frame = -3
Query:   16 KPLRDALVGL--PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 279
            K L DALVG    GV G+S E+RKRLTI VELVA P I+F+DEPTSGLD               D G  +VCTIHQPS  +FE FD +LL
Sbjct:  949 KHLGDALVGTLETGV-GISVEERKRLTIGVELVAKPHILFLDEPTSGLDAQSSYNIVKFIRKLADAGMPLVCTIHQPSSVLFEHFDRILL 1037          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: ABCGL_DICDI (ABC transporter G family member 21 OS=Dictyostelium discoideum GN=abcG21 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.159e-17
Identity = 49/90 (54.44%), Postives = 57/90 (63.33%), Query Frame = -3
Query:   16 KPLRDALVGL--PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 279
            K L DAL+G    GV G+S E+RKRLTI VELVA P I+F+DEPTSGLD               D G  +VCTIHQPS  +FE FD +LL
Sbjct:  945 KHLGDALIGTLETGV-GISVEERKRLTIGVELVAKPHILFLDEPTSGLDAQSSYNIVKFIRKLADAGMPLVCTIHQPSSVLFEHFDRILL 1033          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: ABCGJ_DICDI (ABC transporter G family member 19 OS=Dictyostelium discoideum GN=abcG19 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.159e-17
Identity = 49/90 (54.44%), Postives = 57/90 (63.33%), Query Frame = -3
Query:   16 KPLRDALVGL--PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 279
            K L DAL+G    GV G+S E+RKRLTI VELVA P I+F+DEPTSGLD               D G  +VCTIHQPS  +FE FD +LL
Sbjct:  945 KHLGDALIGTLETGV-GISVEERKRLTIGVELVAKPHILFLDEPTSGLDAQSSYNIVKFIRKLADAGMPLVCTIHQPSSVLFEHFDRILL 1033          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: ABCGA_DICDI (ABC transporter G family member 10 OS=Dictyostelium discoideum GN=abcG10 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.432e-17
Identity = 47/89 (52.81%), Postives = 56/89 (62.92%), Query Frame = -3
Query:   16 KPLRDALVG-LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 279
            K L DAL+G L    G+S E+RKRLTI +ELVA P I+F+DEPTSGLD               D G  +VCTIHQPS  +FE FD +LL
Sbjct:  965 KHLGDALIGSLETGIGISVEERKRLTIGIELVAKPHILFLDEPTSGLDSQSSYNIVKFIRKLADAGMPLVCTIHQPSSVLFEYFDRILL 1053          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: CDR3_CANAL (Opaque-specific ABC transporter CDR3 OS=Candida albicans GN=CDR3 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.210e-16
Identity = 45/85 (52.94%), Postives = 57/85 (67.06%), Query Frame = -3
Query:   16 DALVGLPGVNGLSTEQRKRLTIAVELVANPS-IIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 267
            DA+VG+PG  GL+ EQRKRLTIAVELVA P  ++F+DEPTSGLD               + G+ ++CTIHQPS  + E FD +LL
Sbjct:  972 DAIVGVPG-EGLNVEQRKRLTIAVELVARPKLLVFLDEPTSGLDSQTAWSICKLIRKLANHGQAILCTIHQPSAILLEEFDRLLL 1055          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: ABCGF_DICDI (ABC transporter G family member 15 OS=Dictyostelium discoideum GN=abcG15 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.581e-16
Identity = 47/89 (52.81%), Postives = 55/89 (61.80%), Query Frame = -3
Query:   16 KPLRDALVG-LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 279
            K L DAL+G L    G+S E+RKR TI VELVA P I+F+DEPTSGLD               D G  +VCTIHQPS  +FE FD +LL
Sbjct:  970 KHLGDALIGDLETGVGISVEERKRTTIGVELVAKPHILFLDEPTSGLDAQSSYNIIKFIRKLADAGMPLVCTIHQPSSVLFEHFDRILL 1058          
The following BLAST results are available for this feature:
BLAST of GH733308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
AB33G_ARATH5.790e-2768.60ABC transporter G family member 33 OS=Arabidopsis ... [more]
ABCGH_DICDI3.185e-1754.44ABC transporter G family member 17 OS=Dictyosteliu... [more]
ABCGE_DICDI3.185e-1754.44ABC transporter G family member 14 OS=Dictyosteliu... [more]
ABCGB_DICDI3.185e-1754.44ABC transporter G family member 11 OS=Dictyosteliu... [more]
ABCG9_DICDI3.185e-1755.56ABC transporter G family member 9 OS=Dictyostelium... [more]
ABCGL_DICDI4.159e-1754.44ABC transporter G family member 21 OS=Dictyosteliu... [more]
ABCGJ_DICDI4.159e-1754.44ABC transporter G family member 19 OS=Dictyosteliu... [more]
ABCGA_DICDI5.432e-1752.81ABC transporter G family member 10 OS=Dictyosteliu... [more]
CDR3_CANAL1.210e-1652.94Opaque-specific ABC transporter CDR3 OS=Candida al... [more]
ABCGF_DICDI1.581e-1652.81ABC transporter G family member 15 OS=Dictyosteliu... [more]

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Properties
Property NameValue
Genbank descriptionU_108 Citrus clementina pistils cDNA-AFLP library Citrus clementina cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GH733308 ID=GH733308; Name=GH733308; organism=Citrus clementina; type=EST; length=293bp
GACTGCGTACCAATTCAGCAATACCTCATCAAATGCTTCAAAAATGTCTA
TGCTTGGCTGATGAATTGTGCACACAACCGTTCTCCCTGTATCCACTGTA
TTTCTAACCGTACGCACGACAATAGCAGCTGCTCTAGCATCAAGGCCAGA
TGTTGGCTCGTCCATGAAGATGATTGAAGGGTTAGCAACCAATTCTACAG
CAATTGTCAATCTCTTCCTTTGCTCTGTTGAAAGACCATTTACTCCTGGA
AGGCCAACCAAAGCATCCCTCAATGGTTTACTCAGGACTCATC
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