GH733308

Overview
NameGH733308
Unique NameGH733308
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length293
Libraries
Library NameType
Citrus clementina pistils cDNA-AFLP librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14610 contig Ccv1_Contig14610:404..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: SNQ2_YEAST (Protein SNQ2 OS=Saccharomyces cerevisiae GN=SNQ2 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.932e-14
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = -3
Query:   16 DALVGLPGVNGLSTEQRKRLTIAVELVANPSII-FMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 267
            +ALVG  G  GL+ EQRK+L+I VELVA P ++ F+DEPTSGLD                 G++++CTIHQPS  +FE FD +LL
Sbjct:  983 EALVGEVGC-GLNVEQRKKLSIGVELVAKPDLLLFLDEPTSGLDSQSSWAIIQLLRKLSKAGQSILCTIHQPSATLFEEFDRLLL 1066          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: CDR4_CANAL (ABC transporter CDR4 OS=Candida albicans GN=CDR4 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.523e-14
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = -3
Query:   19 DALVGLPGVNGLSTEQRKRLTIAVELVANPSI-IFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVL 267
            DA+VG+ G  GL+ EQRKRL+I VELVA P + +F+DEPTSGLD               D G+ ++CTIHQPS  +   FD +L
Sbjct:  978 DAVVGVSG-EGLNVEQRKRLSIGVELVAKPKLLVFLDEPTSGLDSQTAWSICKLIRKLADNGQAILCTIHQPSAILLAEFDRLL 1060          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: ABCGI_DICDI (ABC transporter G family member 18 OS=Dictyostelium discoideum GN=abcG18 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.296e-14
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = -3
Query:   16 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 240
            +GLS  QRKR+ + +EL ++P ++F+DEPTSGLD                +GR+V+CTIHQPS  IF+ FD +LL
Sbjct:  951 SGLSLSQRKRVNMGIELASDPQLLFLDEPTSGLDSSAALKVMNLIKKIASSGRSVICTIHQPSTTIFKKFDHLLL 1025          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: ABCG1_DICDI (ABC transporter G family member 1 OS=Dictyostelium discoideum GN=abcG1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.296e-14
Identity = 37/86 (43.02%), Postives = 54/86 (62.79%), Query Frame = -3
Query:   16 DALVGLPG--VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 267
            D LVG     + G+S  +R+R+TI++EL+  PS+I +DEPTSGLD                +GRT++CTIHQP  +I++ FD +LL
Sbjct:  251 DTLVGTADNKIRGISGGERRRVTISIELLTGPSVILLDEPTSGLDASTSFYVMSALKKLAKSGRTIICTIHQPRSNIYDMFDNLLL 336          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: PDR5_YEAST (Pleiotropic ABC efflux transporter of multiple drugs OS=Saccharomyces cerevisiae GN=PDR5 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.342e-14
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = -3
Query:   19 DALVGLPGVNGLSTEQRKRLTIAVELVANPS-IIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVL 267
            DA+VG+ G  GL+ EQRKRLTI VEL A P  ++F+DEPTSGLD               + G+ ++CTIHQPS  + + FD +L
Sbjct: 1000 DAVVGVAG-EGLNVEQRKRLTIGVELTAKPKLLVFLDEPTSGLDSQTAWSICQLMKKLANHGQAILCTIHQPSAILMQEFDRLL 1082          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: ABCG4_HUMAN (ATP-binding cassette sub-family G member 4 OS=Homo sapiens GN=ABCG4 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.342e-14
Identity = 37/73 (50.68%), Postives = 46/73 (63.01%), Query Frame = -3
Query:   16 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 234
            LS  QRKRL IA+ELV NP ++F DEPTSGLD                 GRT++CTIHQPS  +FE FD++ +
Sbjct:  201 LSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKSLAQGGRTIICTIHQPSAKLFEMFDKLYI 273          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: ABCG1_MOUSE (ATP-binding cassette sub-family G member 1 OS=Mus musculus GN=Abcg1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.342e-14
Identity = 43/90 (47.78%), Postives = 52/90 (57.78%), Query Frame = -3
Query:   22 KPLRDALVGLPGVN----GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEV 279
            K +  AL  LP  N     LS  QRKRL IA+ELV NP ++F DEPTSGLD                 GR++VCTIHQPS  +FE FD++
Sbjct:  198 KEILTALGLLPCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIVCTIHQPSAKLFELFDQL 287          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: WHITE_CERCA (Protein white OS=Ceratitis capitata GN=W PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.589e-14
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = -3
Query:   16 RDALVGLPG-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 270
            ++ L+G+PG V GLS  +RKRL  A E + +P ++  DEPTSGLD                 G+TV+ TIHQPS ++FE FD++LL
Sbjct:  219 QNTLIGVPGRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILL 304          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: PDR15_YEAST (ATP-dependent permease PDR15 OS=Saccharomyces cerevisiae GN=PDR15 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.252e-13
Identity = 40/84 (47.62%), Postives = 52/84 (61.90%), Query Frame = -3
Query:   19 DALVGLPGVNGLSTEQRKRLTIAVELVANPS-IIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVL 267
            DA+VG+ G  GL+ EQRKRLTI VEL A P  ++F+DEPTSGLD                 G+ ++CTIHQPS  + + FD +L
Sbjct: 1015 DAVVGVAG-EGLNVEQRKRLTIGVELAARPKLLVFLDEPTSGLDSQTAWDTCQLMRKLATHGQAILCTIHQPSAILMQQFDRLL 1097          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: YN99_YEAST (Uncharacterized ABC transporter ATP-binding protein/permease YNR070W OS=Saccharomyces cerevisiae GN=YNR070W PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.636e-13
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = -3
Query:   16 DALVGLPGVNGLSTEQRKRLTIAVELVANPSII-FMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 267
            +ALVG  G  GL+ EQRK+L+I VELV  P ++ F+DEPTSGLD                 G++++CTIHQPS  +FE FD +LL
Sbjct:  859 EALVGEIGY-GLNVEQRKKLSIGVELVGKPDLLLFLDEPTSGLDSQSAWAVVKMLKRLALAGQSILCTIHQPSATLFEQFDRLLL 942          
The following BLAST results are available for this feature:
BLAST of GH733308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
SNQ2_YEAST1.932e-1449.41Protein SNQ2 OS=Saccharomyces cerevisiae GN=SNQ2 P... [more]
CDR4_CANAL2.523e-1448.81ABC transporter CDR4 OS=Candida albicans GN=CDR4 P... [more]
ABCGI_DICDI3.296e-1446.67ABC transporter G family member 18 OS=Dictyosteliu... [more]
ABCG1_DICDI3.296e-1443.02ABC transporter G family member 1 OS=Dictyostelium... [more]
PDR5_YEAST7.342e-1447.62Pleiotropic ABC efflux transporter of multiple dru... [more]
ABCG4_HUMAN7.342e-1450.68ATP-binding cassette sub-family G member 4 OS=Homo... [more]
ABCG1_MOUSE7.342e-1447.78ATP-binding cassette sub-family G member 1 OS=Mus ... [more]
WHITE_CERCA9.589e-1444.19Protein white OS=Ceratitis capitata GN=W PE=2 SV=1[more]
PDR15_YEAST1.252e-1347.62ATP-dependent permease PDR15 OS=Saccharomyces cere... [more]
YN99_YEAST1.636e-1348.24Uncharacterized ABC transporter ATP-binding protei... [more]

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Properties
Property NameValue
Genbank descriptionU_108 Citrus clementina pistils cDNA-AFLP library Citrus clementina cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GH733308 ID=GH733308; Name=GH733308; organism=Citrus clementina; type=EST; length=293bp
GACTGCGTACCAATTCAGCAATACCTCATCAAATGCTTCAAAAATGTCTA
TGCTTGGCTGATGAATTGTGCACACAACCGTTCTCCCTGTATCCACTGTA
TTTCTAACCGTACGCACGACAATAGCAGCTGCTCTAGCATCAAGGCCAGA
TGTTGGCTCGTCCATGAAGATGATTGAAGGGTTAGCAACCAATTCTACAG
CAATTGTCAATCTCTTCCTTTGCTCTGTTGAAAGACCATTTACTCCTGGA
AGGCCAACCAAAGCATCCCTCAATGGTTTACTCAGGACTCATC
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