GH733318

Overview
NameGH733318
Unique NameGH733318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length383
Libraries
Library NameType
Citrus clementina pistils cDNA-AFLP librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4062 contig Ccv1_Contig4062:539..920. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GH733318 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.196e-32
Identity = 61/114 (53.51%), Postives = 81/114 (71.05%), Query Frame = -1
Query:   21 GEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 362
            G+A+GVDLL NPDL+ +D  + FK+A+WFWMT Q PKPS H+VI   W PS+ +  AGR+PGYG+ TNII+GG+ECG+G    V +RIG++            DNLDCYNQ+P+
Sbjct:   97 GKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYK-----------DNLDCYNQKPF 199          
BLAST of GH733318 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.120e-30
Identity = 54/114 (47.37%), Postives = 81/114 (71.05%), Query Frame = -1
Query:   21 GEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 362
            G+ALG D L NP+++A    ++F++A+WFWMT +  KPSCH+V++ E++P   +V A R  G+GL TNI+NGG+EC + G+  V NRIGF+  +C   G+  G NLDC +Q+P+
Sbjct:  177 GQALGFDGLRNPEIVANCSDIAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDCEHQQPF 290          
BLAST of GH733318 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.910e-30
Identity = 57/115 (49.57%), Postives = 80/115 (69.57%), Query Frame = -1
Query:   21 GEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 362
            GEA+G DLL NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  +  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+  +C   G+  G NLDC+ Q P+
Sbjct:  217 GEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCFGQAPF 329          
BLAST of GH733318 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.910e-30
Identity = 57/115 (49.57%), Postives = 80/115 (69.57%), Query Frame = -1
Query:   21 GEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 362
            GEA+G DLL NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  +  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+  +C   G+  G NLDC+ Q P+
Sbjct:  217 GEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCFGQAPF 329          
BLAST of GH733318 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.112e-29
Identity = 57/116 (49.14%), Postives = 75/116 (64.66%), Query Frame = -1
Query:   21 CGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 365
            CG  LG +LL+ P+ +ATDPVLSF++A+WFWM       PSCHEVI  EW PS  ++ AGR PG+G+ TNII  G EC + G    +NRI ++  +C    + PGDNL C NQ  +
Sbjct:  189 CGNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYCDNQETF 304          
BLAST of GH733318 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.050e-16
Identity = 43/108 (39.81%), Postives = 57/108 (52.78%), Query Frame = -1
Query:   39 GEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 362
            G+A+G D L NP+ +ATD   SFK+A+WFWMT      + H V+                 G+G TT  ING +EC     D   +RI F+  +C  FG+ PGDNL C
Sbjct:  202 GQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT------NVHSVMNQ---------------GFGATTKAINGALECNGQNQDQANDRIQFYKKYCADFGVAPGDNLTC 288          
BLAST of GH733318 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 3.497e-16
Identity = 43/109 (39.45%), Postives = 66/109 (60.55%), Query Frame = -1
Query:   45 GEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGND--AVR-NRIGFFTTFCGKFGIQPGDNL 362
            G+A+G DL+ NPDL+  DP++SFK+A+WFWM+    KPSCH+++++          A R+P  G+  NII+        G+D  AVR + IGF+  +C   G+  G +L
Sbjct:  254 GQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVLN------ANSAANRIPNKGVIGNIISRAF-----GHDDFAVRSSSIGFYKRYCDMLGVSYGHDL 351          
BLAST of GH733318 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.595e-15
Identity = 39/108 (36.11%), Postives = 57/108 (52.78%), Query Frame = -1
Query:   39 GEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 362
            G+ +G D L +PD +A DP +SFK+A+WFWM       + H+V+               L G+G T   ING +EC      AV  R+ ++  +C +FG+ PG NL C
Sbjct:  202 GQNIGFDGLRDPDRVAQDPTISFKTALWFWMN------NVHQVM---------------LQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNLYC 288          
BLAST of GH733318 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.919e-14
Identity = 37/111 (33.33%), Postives = 60/111 (54.05%), Query Frame = -1
Query:   39 VRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 371
            +  G+ L  D LN+PD++  DP++SFK+++WFW+     +     VI+D  +            G+G T  IINGG EC       +  R+G++  +C + G+ PG+NL C
Sbjct:  157 IDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWI-----RKGVQYVILDPNQ------------GFGATIRIINGGQECDGHNTAQMMARVGYYQEYCAQLGVSPGNNLPC 250          
BLAST of GH733318 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.273e-14
Identity = 36/108 (33.33%), Postives = 56/108 (51.85%), Query Frame = -1
Query:   39 GEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 362
            G+++G D L +PD +A  PVL+F++A+W+W        + H+  +                G+G T   ING +EC      AV NR+ ++  FC +FG+ PG NL C
Sbjct:  183 GQSIGFDGLGDPDAVARSPVLAFQTALWYWTN------NVHDAFVSG-------------QGFGATIRAINGALECDGKNPTAVSNRVAYYQQFCQQFGVDPGSNLTC 271          
The following BLAST results are available for this feature:
BLAST of GH733318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIT_AVESA1.196e-3253.51Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI10_ORYSJ1.120e-3047.37Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI7_ORYSJ1.910e-3049.57Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI1.910e-3049.57Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHI8_POPTR2.112e-2949.14Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIP_BETVU2.050e-1639.81Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
AGI_URTDI3.497e-1639.45Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI5_ORYSJ6.595e-1536.11Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_DIOJA1.919e-1433.33Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI6_ORYSJ3.273e-1433.33Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionU_118 Citrus clementina pistils cDNA-AFLP library Citrus clementina cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GH733318 ID=GH733318; Name=GH733318; organism=Citrus clementina; type=EST; length=383bp
GATGAGTCCTGAGTAAGGCCATAAGGCCGTTGGTTGTAGCAATCAAGATT
GTCACCAGGCTGAATCCCAAACTTGCCACAGAAAGTGGTAAAGAACCCAA
TACGGTTGCGTACGGCGTCATTCCCACCTTGGCCACATTCAATTCCACCG
TTGATTATATTTGTGGTTAGACCGTATCCCGGAAGCCGGCCGGCGTTTAC
TTCAATTGCTGATGGTTTCCATTCGTCGATAATGACTTCGTGGCACGATG
GCTTTGGTGGCTGTGCAGTCATCCAGAACCAGATTGCTGACTTGAATGAT
AGTACTGGATCAGTGGCAAGAAGGTCTGGATTGTTCAACAAGTCCACCCC
CAAGGCTTCTCCGCACCTTACTCAGGACTCATC
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