GH733318

Overview
NameGH733318
Unique NameGH733318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length383
Libraries
Library NameType
Citrus clementina pistils cDNA-AFLP librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4062 contig Ccv1_Contig4062:539..920. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GH733318 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.273e-14
Identity = 38/108 (35.19%), Postives = 56/108 (51.85%), Query Frame = -1
Query:   39 GEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 362
            G+ +G D L +PD +A DP +SFK+A+WFWM       + H+V+                 G+G T   ING +EC      AV  R+ ++  +C +FG+ PG NL C
Sbjct:  199 GKNIGFDGLRDPDKVAQDPTISFKTALWFWMN------NVHQVMSQ---------------GFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of GH733318 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.275e-14
Identity = 35/109 (32.11%), Postives = 62/109 (56.88%), Query Frame = -1
Query:   39 CGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 365
            CG++L ++LL  P+L++++P ++F++ +WFWM +  P       ++++              G+G T   IN G+EC  G + AV  RI ++  +CG+ G+ PG NL C
Sbjct:  182 CGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP-------VLNQ--------------GFGATIRAIN-GMECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
BLAST of GH733318 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.001e-12
Identity = 39/109 (35.78%), Postives = 56/109 (51.38%), Query Frame = -1
Query:   39 GEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRN-RIGFFTTFCGKFGIQPGDNLDC 362
            G A+G D L +P  +A D V++FK+A+WFWM       S H V+                 G+G TT  +   +ECG G N A  N R+G++  +C + G+ PG NL C
Sbjct:  183 GRAIGFDGLGDPGRVARDAVVAFKAALWFWMN------SVHGVVPQ---------------GFGATTRAMQRALECG-GNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of GH733318 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.986e-11
Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = -1
Query:  135 MTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIEC 272
            MT Q  KPSCH+VI + W+P+A +  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
BLAST of GH733318 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.778e-11
Identity = 34/108 (31.48%), Postives = 53/108 (49.07%), Query Frame = -1
Query:   39 GEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 362
            G A   D L  P+ ++ D V+SFK+A+W+WM    P       +I++              G+G T   ING +EC       V+ R+ ++T +C + G+  GDNL C
Sbjct:  184 GSANNFDGLGAPETVSNDVVVSFKTALWYWMQHVRP-------VINQ--------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
The following BLAST results are available for this feature:
BLAST of GH733318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI4_ORYSJ3.273e-1435.19Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_BRANA4.275e-1432.11Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIB_MAIZE4.001e-1235.78Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI4_ARAHY1.986e-1160.87Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]
CHI4_PHAVU5.778e-1131.48Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]

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Properties
Property NameValue
Genbank descriptionU_118 Citrus clementina pistils cDNA-AFLP library Citrus clementina cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GH733318 ID=GH733318; Name=GH733318; organism=Citrus clementina; type=EST; length=383bp
GATGAGTCCTGAGTAAGGCCATAAGGCCGTTGGTTGTAGCAATCAAGATT
GTCACCAGGCTGAATCCCAAACTTGCCACAGAAAGTGGTAAAGAACCCAA
TACGGTTGCGTACGGCGTCATTCCCACCTTGGCCACATTCAATTCCACCG
TTGATTATATTTGTGGTTAGACCGTATCCCGGAAGCCGGCCGGCGTTTAC
TTCAATTGCTGATGGTTTCCATTCGTCGATAATGACTTCGTGGCACGATG
GCTTTGGTGGCTGTGCAGTCATCCAGAACCAGATTGCTGACTTGAATGAT
AGTACTGGATCAGTGGCAAGAAGGTCTGGATTGTTCAACAAGTCCACCCC
CAAGGCTTCTCCGCACCTTACTCAGGACTCATC
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