BQ623185

Overview
NameBQ623185
Unique NameBQ623185
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9644 contig Csv1_Contig9644:222..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623185 vs. ExPASy Swiss-Prot
Match: SPT4H_XENLA (Transcription elongation factor SPT4 OS=Xenopus laevis GN=supt4h1 PE=3 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 4.079e-14
Identity = 23/60 (38.33%), Postives = 37/60 (61.67%), Query Frame = 3
Query:  168 VVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 347
            V DCT+ +F+GI+++M P  SW ++W RI  F PG Y ++V+  LP+ +    +   V Y
Sbjct:   49 VYDCTSSSFDGIVAMMSPDDSWVSKWQRITNFKPGVYAVSVTGRLPQGIVRELKSRGVVY 108          

HSP 2 Score: 41.5874 bits (96), Expect = 4.079e-14
Identity = 17/24 (70.83%), Postives = 18/24 (75.00%), Query Frame = 2
Query:   62 LRACLRCRLVKTYDQFRESGCENC 133
            LRACL C LVKT DQF   GC+NC
Sbjct:   13 LRACLLCSLVKTIDQFEYDGCDNC 36          
BLAST of BQ623185 vs. ExPASy Swiss-Prot
Match: SPT42_MOUSE (Transcription elongation factor SPT4 2 OS=Mus musculus GN=Supt4h2 PE=2 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 1.163e-13
Identity = 22/60 (36.67%), Postives = 36/60 (60.00%), Query Frame = 3
Query:  168 VVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 347
            V DCT+ +F+GI ++M P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct:   49 VYDCTSSSFDGINAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108          

HSP 2 Score: 41.5874 bits (96), Expect = 1.163e-13
Identity = 17/24 (70.83%), Postives = 18/24 (75.00%), Query Frame = 2
Query:   62 LRACLRCRLVKTYDQFRESGCENC 133
            LRACL C LVKT DQF   GC+NC
Sbjct:   13 LRACLLCSLVKTIDQFEYDGCDNC 36          
BLAST of BQ623185 vs. ExPASy Swiss-Prot
Match: SPT4_ASPFU (Transcription elongation factor spt4 OS=Aspergillus fumigatus GN=spt4 PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.481e-13
Identity = 25/62 (40.32%), Postives = 41/62 (66.13%), Query Frame = 3
Query:  168 VVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVP 353
            + +CT+  F G+I++ DP+ SW ARW R+  +V G Y + V+ +LP+D+    ED  V+Y+P
Sbjct:   51 IQECTSQVFEGLITLRDPSTSWVARWQRLEGYVAGTYAVKVTGSLPDDVITNLEDSGVRYIP 112          

HSP 2 Score: 33.4982 bits (75), Expect = 1.481e-13
Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 2
Query:   59 SLRACLRCRLVKTYDQFRESGCENC 133
            +LRAC+ C LV+ + +F   GC NC
Sbjct:   14 TLRACMVCSLVQLHSKFMRDGCPNC 38          
BLAST of BQ623185 vs. ExPASy Swiss-Prot
Match: SPT4H_CAEEL (Transcription elongation factor SPT4 OS=Caenorhabditis elegans GN=spt-4 PE=2 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 3.306e-13
Identity = 23/66 (34.85%), Postives = 40/66 (60.61%), Query Frame = 3
Query:  165 RVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 362
            +V DCT+ N++G+I+ M    SW  +W ++ R V G Y ++VS  LP ++ +  +   V+Y P +R
Sbjct:   47 KVYDCTSANYDGMIAAMSNNESWVCKWQKMQRKVKGMYAISVSGVLPNNIVSELKSLGVRYKPNQR 112          

HSP 2 Score: 39.6614 bits (91), Expect = 3.306e-13
Identity = 15/25 (60.00%), Postives = 20/25 (80.00%), Query Frame = 2
Query:   59 SLRACLRCRLVKTYDQFRESGCENC 133
            +LRACL C LVK+ + F++ GCENC
Sbjct:   11 NLRACLLCSLVKSVESFQKEGCENC 35          
BLAST of BQ623185 vs. ExPASy Swiss-Prot
Match: SPT4H_CAEBR (Transcription elongation factor SPT4 OS=Caenorhabditis briggsae GN=spt-4 PE=3 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 5.876e-12
Identity = 22/66 (33.33%), Postives = 40/66 (60.61%), Query Frame = 3
Query:  165 RVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 362
            +V DCT+ N++G+I+ M    SW  +W ++ R V G Y ++VS +LP ++ +  +   V+Y   +R
Sbjct:   47 KVYDCTSANYDGMIAAMSNDDSWVCKWQKMQRRVKGIYAISVSGSLPSNVVSDLKSMGVRYKANQR 112          

HSP 2 Score: 39.6614 bits (91), Expect = 5.876e-12
Identity = 15/25 (60.00%), Postives = 19/25 (76.00%), Query Frame = 2
Query:   59 SLRACLRCRLVKTYDQFRESGCENC 133
            +LRACL C L+K+ D F+  GCENC
Sbjct:   11 NLRACLLCSLIKSVDAFQTDGCENC 35          
BLAST of BQ623185 vs. ExPASy Swiss-Prot
Match: SPT4_ASHGO (Transcription elongation factor SPT4 OS=Ashbya gossypii GN=SPT4 PE=3 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 7.853e-12
Identity = 19/51 (37.25%), Postives = 36/51 (70.59%), Query Frame = 3
Query:  171 VDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNL 323
            ++CT+P+F G++ +  PT+SW A+W+ + ++VPG Y + V   LP ++ +L
Sbjct:   39 IECTSPSFEGLVGMCKPTKSWVAKWISVEQYVPGMYAIKVDGRLPVEVVDL 89          

HSP 2 Score: 32.3426 bits (72), Expect = 7.853e-12
Identity = 11/23 (47.83%), Postives = 16/23 (69.57%), Query Frame = 2
Query:   65 RACLRCRLVKTYDQFRESGCENC 133
            RAC+ C +V+T ++F   GC NC
Sbjct:    5 RACMLCGIVQTTNEFTRDGCPNC 27          
BLAST of BQ623185 vs. ExPASy Swiss-Prot
Match: SPT4_KLULA (Transcription elongation factor SPT4 OS=Kluyveromyces lactis GN=SPT4 PE=3 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 2.235e-11
Identity = 20/51 (39.22%), Postives = 34/51 (66.67%), Query Frame = 3
Query:  171 VDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNL 323
            V+CT+P+F G++ +  P+RSW ARW+ I  ++PG Y + +   LP ++  L
Sbjct:   39 VECTSPSFEGLVGMCKPSRSWVARWMSIDSYIPGMYAVKIDGRLPIEVTEL 89          

HSP 2 Score: 31.187 bits (69), Expect = 2.235e-11
Identity = 11/23 (47.83%), Postives = 16/23 (69.57%), Query Frame = 2
Query:   65 RACLRCRLVKTYDQFRESGCENC 133
            RAC+ C LV++  +F  +GC NC
Sbjct:    5 RACMLCGLVQSTAEFNRNGCPNC 27          
BLAST of BQ623185 vs. ExPASy Swiss-Prot
Match: SPT4_GIBZE (Transcription elongation factor SPT4 OS=Gibberella zeae GN=SPT4 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 3.825e-11
Identity = 27/64 (42.19%), Postives = 46/64 (71.88%), Query Frame = 3
Query:  165 RVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDE-RVQYVP 353
            ++  CT+  F G+I++ +PT+SW A++ R+  +VPG Y + VS  LP+D+++  EDE R+QY+P
Sbjct:   26 QIESCTSQVFEGVITLANPTKSWIAKYQRLDSYVPGMYAIKVSGQLPDDVRSTLEDEYRIQYIP 89          

HSP 2 Score: 21.1718 bits (43), Expect = 3.825e-11
Identity = 9/24 (37.50%), Postives = 12/24 (50.00%), Query Frame = 2
Query:   95 TYDQFRESGCENCPFFKMDEDHEP 166
            T  +F+  GC NC  F +   H P
Sbjct:    2 TSQRFQNEGCPNCEEF-LHLQHSP 24          
The following BLAST results are available for this feature:
BLAST of BQ623185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
SPT4H_XENLA4.079e-1438.33Transcription elongation factor SPT4 OS=Xenopus la... [more]
SPT42_MOUSE1.163e-1336.67Transcription elongation factor SPT4 2 OS=Mus musc... [more]
SPT4_ASPFU1.481e-1340.32Transcription elongation factor spt4 OS=Aspergillu... [more]
SPT4H_CAEEL3.306e-1334.85Transcription elongation factor SPT4 OS=Caenorhabd... [more]
SPT4H_CAEBR5.876e-1233.33Transcription elongation factor SPT4 OS=Caenorhabd... [more]
SPT4_ASHGO7.853e-1237.25Transcription elongation factor SPT4 OS=Ashbya gos... [more]
SPT4_KLULA2.235e-1139.22Transcription elongation factor SPT4 OS=Kluyveromy... [more]
SPT4_GIBZE3.825e-1142.19Transcription elongation factor SPT4 OS=Gibberella... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00276 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00276 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623185 ID=BQ623185; Name=BQ623185; organism=Citrus sinensis; type=EST; length=603bp
TGGCTCGGGAGAACAATGGGAAGCGCACCGGCACAAATTCCAACAAGCTT
CGGGCATGAGCCTGAGAGCTTGCCTCCGTTGTCGGCTTGTCAAAACCTAT
GATCAGTTTAGAGAATCGGGATGCGAGAACTGTCCCTTCTTCAAGATGGA
TGAAGACCACGAGCCGTGTTGTTGATTGTACTACCCCTAATTTTAATGGC
ATTATATCAGTCATGGATCCAACTAGAAGCTGGGCTGCTCGCTGGTTGCG
AATTGGAAGATTTGTCCCTGGTTGTTATACTCTTGCTGTCTCAGAAGCCC
TACCTGAGGACTTGCAGAACTTATGTGAAGACGAGCGCGTGCAATATGTG
CCGCCAAAACGTTAATGACAGTTTGAGCAGTGCATTGTCTGTAAAGATTA
TATCTGTTTCGGGTTACTTCGGAGATGACATGTTTAACGATTATATGCAA
CTGTAGCTGCTAATGTTGACTTGAATTTCTTGTGCCCAATGCTTGTGTAG
TAATCCTATTTATGTTTGTAACTTGTATGCTGCGTTTTGATTTTTTAATG
GAGTTCTAGAAACTTTTGAGTTGATTTTAGAAACATCTGCGGTTCTCTTT
TAC
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