BQ623302

Overview
NameBQ623302
Unique NameBQ623302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length459
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_CAEEL (Superoxide dismutase [Cu-Zn] OS=Caenorhabditis elegans GN=sod-1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 3.398e-19
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKG---GHELSLTTGNAGGRLACGVVGL 304
            GDLGN+ A A+GVA+  + D  ++L GPNTVVGR+ VVH  +DDLG+G     E S  TGNAG R ACGV+ L
Sbjct:  104 GDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIAL 176          

HSP 2 Score: 36.1946 bits (82), Expect = 3.398e-19
Identity = 14/20 (70.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D+TNGCIS G HFNP   TH
Sbjct:   74 DSTNGCISAGPHFNPFGKTH 93          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC5_DICDI (Superoxide dismutase [Cu-Zn] 5 OS=Dictyostelium discoideum GN=sodE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.455e-19
Identity = 36/73 (49.32%), Postives = 51/73 (69.86%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 313
            GDLGNI +N +  +   I DN I+L G N+++GR+ VVH+ EDDLG+G  + S  TGNAG RL CG++ L+ +
Sbjct:   80 GDLGNIESNKDKKSIINITDNIITLFGQNSIIGRSIVVHDKEDDLGRGNSQDSKITGNAGSRLGCGIIALSKI 152          

HSP 2 Score: 36.5798 bits (83), Expect = 4.455e-19
Identity = 14/20 (70.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+S GAHFNP    H
Sbjct:   50 DTTNGCLSAGAHFNPFKKEH 69          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODE_ONCVO (Extracellular superoxide dismutase [Cu-Zn] OS=Onchocerca volvulus GN=sod-4 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.722e-19
Identity = 45/76 (59.21%), Postives = 51/76 (67.11%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGG---HELSLTTGNAGGRLACGVVGLTPV 313
            GDLGNIVA ANGVAE  I    I L GP +V+G + VVH   DDLG+G     E SL TGNAG RLACGV+G+  V
Sbjct:  125 GDLGNIVAGANGVAEVYINSYDIKLRGPLSVIGHSLVVHANTDDLGQGTGNMREESLKTGNAGSRLACGVIGIAAV 200          

HSP 2 Score: 31.9574 bits (71), Expect = 5.722e-19
Identity = 12/20 (60.00%), Postives = 13/20 (65.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC S G H+NP   TH
Sbjct:   95 DQTNGCTSAGDHYNPFGKTH 114          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_PAESI (Superoxide dismutase [Cu-Zn] OS=Paecilomyces sinensis GN=SOD1 PE=3 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 5.788e-19
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GD+GNI  + +G ++ +I D  I L GP++V+GR  V+H   DDLGKGG++ SL TGNAG R ACGV+G+
Sbjct:   83 GDMGNIETDCDGNSKGSIKDKLIKLIGPHSVIGRTVVIHAGTDDLGKGGNDESLKTGNAGPRPACGVIGV 152          

HSP 2 Score: 35.4242 bits (80), Expect = 5.788e-19
Identity = 13/20 (65.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC S G HFNP+  TH
Sbjct:   53 DNTNGCTSAGPHFNPHGKTH 72          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_CLAPU (Superoxide dismutase [Cu-Zn] OS=Claviceps purpurea GN=SOD1 PE=3 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 5.788e-19
Identity = 36/71 (50.70%), Postives = 50/71 (70.42%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 307
            GDLGN+  +  G A+ ++ D  + L GP++V+GR  V+H   DDLGKG +E SL TGNAG R ACGV+G++
Sbjct:   83 GDLGNLETDGQGNAKGSVKDEHVKLIGPHSVIGRTVVIHAGTDDLGKGDNEESLKTGNAGPRPACGVIGIS 153          

HSP 2 Score: 35.4242 bits (80), Expect = 5.788e-19
Identity = 13/20 (65.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC S G HFNP+  TH
Sbjct:   53 DNTNGCTSAGPHFNPHGKTH 72          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_CANFA (Superoxide dismutase [Cu-Zn] OS=Canis familiaris GN=SOD1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.795e-19
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+ A  +GVA  +I D+ I+L G  +++GR  VVHE  DDLGKG +E S  TGNAG RLACGV+G+
Sbjct:   82 GDLGNVTAGKDGVAIVSIEDSLIALSGDYSIIGRTMVVHEKRDDLGKGDNEESTQTGNAGSRLACGVIGI 151          

HSP 2 Score: 29.261 bits (64), Expect = 5.795e-19
Identity = 11/20 (55.00%), Postives = 12/20 (60.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D T GC S G HFNP +  H
Sbjct:   52 DXTQGCTSAGPHFNPLSKKH 71          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_NPVAC (Putative superoxide dismutase [Cu-Zn] OS=Autographa californica nuclear polyhedrosis virus GN=SOD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.658e-18
Identity = 37/71 (52.11%), Postives = 50/71 (70.42%), Query Frame = 2
Query:   95 GDLGNIV-ANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGNI  A  N + E  ++DN +SL GP+ ++GR+ VVH  +DDLG   H LS TTGN+GGRL CG++ +
Sbjct:   79 GDLGNIKSAGYNSLTEVNMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTDHPLSKTTGNSGGRLGCGIIAI 149          

HSP 2 Score: 35.039 bits (79), Expect = 1.658e-18
Identity = 13/20 (65.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DT+NGC S G HFNP N  H
Sbjct:   49 DTSNGCTSAGEHFNPTNEDH 68          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_CAEBR (Superoxide dismutase [Cu-Zn] OS=Caenorhabditis briggsae GN=sod-1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.138e-18
Identity = 41/73 (56.16%), Postives = 50/73 (68.49%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKG---GHELSLTTGNAGGRLACGVVGL 304
            GDLGN+ A A+GVA+  I D  I+L G NTV+GR+ VVH  +DDLG+G     E S  TGNAG R ACGV+ L
Sbjct:  104 GDLGNVEAGADGVAKVHITDKLITLYGANTVIGRSMVVHAGQDDLGQGVGDKAEESAKTGNAGARAACGVIAL 176          

HSP 2 Score: 35.4242 bits (80), Expect = 2.138e-18
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D+TNGC+S G HFNP   TH
Sbjct:   74 DSTNGCLSAGPHFNPFGKTH 93          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODE_HAECO (Extracellular superoxide dismutase [Cu-Zn] OS=Haemonchus contortus GN=SOD PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.778e-18
Identity = 39/70 (55.71%), Postives = 47/70 (67.14%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGNI     G     I D+ ISL G + V+GRA V+H   DDLG+G  ELS TTGNAG R+ACGV+G+
Sbjct:  113 GDLGNIETPKTGDTPILISDSVISLTGQHNVIGRAIVIHADMDDLGRGTSELSKTTGNAGARVACGVIGI 182          

HSP 2 Score: 34.2686 bits (77), Expect = 2.778e-18
Identity = 12/20 (60.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D  NGC++ GAHFNP+ M H
Sbjct:   83 DLGNGCLAAGAHFNPHKMMH 102          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_BOTFU (Superoxide dismutase [Cu-Zn] OS=Botryotinia fuckeliana GN=sod1 PE=3 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 3.642e-18
Identity = 38/70 (54.29%), Postives = 47/70 (67.14%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN   +A G A  ++ D+ I L GP +V+GR  VVH   DDLGKG +E S  TGNAG R ACGV+G+
Sbjct:   83 GDLGNFKTDAQGNATGSVQDSHIKLIGPLSVIGRTVVVHSGTDDLGKGENEESKKTGNAGTRPACGVIGI 152          

HSP 2 Score: 35.8094 bits (81), Expect = 3.642e-18
Identity = 13/20 (65.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC S G HFNP+  TH
Sbjct:   53 DNTNGCTSAGPHFNPHGQTH 72          
The following BLAST results are available for this feature:
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
SODC_CAEEL3.398e-1956.16Superoxide dismutase [Cu-Zn] OS=Caenorhabditis ele... [more]
SODC5_DICDI4.455e-1949.32Superoxide dismutase [Cu-Zn] 5 OS=Dictyostelium di... [more]
SODE_ONCVO5.722e-1959.21Extracellular superoxide dismutase [Cu-Zn] OS=Onch... [more]
SODC_PAESI5.788e-1952.86Superoxide dismutase [Cu-Zn] OS=Paecilomyces sinen... [more]
SODC_CLAPU5.788e-1950.70Superoxide dismutase [Cu-Zn] OS=Claviceps purpurea... [more]
SODC_CANFA5.795e-1957.14Superoxide dismutase [Cu-Zn] OS=Canis familiaris G... [more]
SODC_NPVAC1.658e-1852.11Putative superoxide dismutase [Cu-Zn] OS=Autograph... [more]
SODC_CAEBR2.138e-1856.16Superoxide dismutase [Cu-Zn] OS=Caenorhabditis bri... [more]
SODE_HAECO2.778e-1855.71Extracellular superoxide dismutase [Cu-Zn] OS=Haem... [more]
SODC_BOTFU3.642e-1854.29Superoxide dismutase [Cu-Zn] OS=Botryotinia fuckel... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00393 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00393 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623302 ID=BQ623302; Name=BQ623302; organism=Citrus sinensis; type=EST; length=459bp
GATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCTAATAA
CATGACACACCGGTGCCTCCTAAAGATGAAGTGCGACATCGCGTGGTGAC
CTGGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTGT
GGACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCCT
TTGTGGTTCATGAGCTTGAGGATGACCTTGGAAAAGGTGGGCATGAACTT
AGTCTAACCACTGGCAATGCAGGTGGAAGACTGGCATGCGGTGTCGTTGG
CTTGACTCCGGTATGAGATCAGCAAAACCAGTGTGGTTGCACTATTTGCT
GCATGCTTTTTCCAGATTATCAATCGGAGCCAAGTACAATGTTGAAAGTG
AGAGCGTGTAACATAAATTTGTGCAGACAGCTGGTATTAATAAAATAATG
CTTGCGGGC
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