BQ623302

Overview
NameBQ623302
Unique NameBQ623302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length459
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_CANAL (Superoxide dismutase [Cu-Zn] OS=Candida albicans GN=SOD1 PE=3 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 4.736e-18
Identity = 41/71 (57.75%), Postives = 49/71 (69.01%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 307
            GDLGNI  + NGVA+ T  D  I L G ++++GR  VVH   DD GKGG E S TTG+AG R ACGV+GLT
Sbjct:   83 GDLGNISTDGNGVAKGTKQDLLIKLIGKDSILGRTIVVHAGTDDYGKGGFEDSKTTGHAGARPACGVIGLT 153          

HSP 2 Score: 31.5722 bits (70), Expect = 4.736e-18
Identity = 12/20 (60.00%), Postives = 12/20 (60.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC S G HFNP    H
Sbjct:   53 DNTNGCTSAGPHFNPFGKQH 72          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_HAECO (Superoxide dismutase [Cu-Zn] OS=Haemonchus contortus GN=SOD PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.040e-17
Identity = 39/71 (54.93%), Postives = 48/71 (67.61%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKG---GHELSLTTGNAGGRLACGVV 298
            GDLGN+ A A+GVA   I D+ + + G +TVVGR+ VVH   DDLGKG     E SL TGN G R+ACGV+
Sbjct:   83 GDLGNVEAGADGVAHFEIKDHLVKIHGEHTVVGRSLVVHAGTDDLGKGVGEKKEESLKTGNRGARVACGVI 153          

HSP 2 Score: 36.5798 bits (83), Expect = 1.040e-17
Identity = 14/20 (70.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D+TNGC S G HFNP N TH
Sbjct:   53 DSTNGCTSAGPHFNPFNKTH 72          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODE_CAEEL (Extracellular superoxide dismutase [Cu-Zn] OS=Caenorhabditis elegans GN=sod-4 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.733e-17
Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVG 301
            GDLGNI + A+G    ++ D+  SL G  +++GR+ V+HE  DDLG+G  + S TTGNAG RLACG +G
Sbjct:  106 GDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIG 174          

HSP 2 Score: 34.6538 bits (78), Expect = 1.733e-17
Identity = 11/20 (55.00%), Postives = 16/20 (80.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DT NGC+S G H+NP+ ++H
Sbjct:   76 DTGNGCLSAGGHYNPHKLSH 95          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODE_DIRIM (Extracellular superoxide dismutase [Cu-Zn] OS=Dirofilaria immitis PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.264e-17
Identity = 40/75 (53.33%), Postives = 49/75 (65.33%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKG---GHELSLTTGNAGGRLACGVVGLTP 310
            GDL NI A A+GVA   I+ N I L GP +V+GR+ VVH   DDLGKG     E SL TGNAG R+ C ++G+ P
Sbjct:  119 GDLRNIKAGADGVANVNIISNHIQLSGPLSVIGRSLVVHANPDDLGKGNGDAREESLKTGNAGSRIVCSIIGIAP 193          

HSP 2 Score: 28.1054 bits (61), Expect = 2.264e-17
Identity = 10/17 (58.82%), Postives = 11/17 (64.71%), Query Frame = 1
Query:   10 NGCISTGAHFNPNNMTH 60
            NGC S  AH+NP   TH
Sbjct:   92 NGCTSAAAHYNPFEKTH 108          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC4_DICDI (Superoxide dismutase [Cu-Zn] 4 OS=Dictyostelium discoideum GN=sodD PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.039e-17
Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = 2
Query:   95 GDLGNIVA-NANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVV 298
            GDLGNI +  ++ VA   I DN ISL G  +++GR  VVHE +DDLG GG+ LS TTGNAG R+ACG++
Sbjct:   81 GDLGNITSCPSSKVANVLIQDNVISLFGDLSIIGRTLVVHENQDDLGLGGN-LSKTTGNAGARVACGIL 148          

HSP 2 Score: 36.1946 bits (82), Expect = 5.039e-17
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DT+NGC+S GAHFNP ++ H
Sbjct:   51 DTSNGCLSAGAHFNPFHVEH 70          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC1_DEBHA (Superoxide dismutase [Cu-Zn] 1 OS=Debaryomyces hansenii GN=SOD1 PE=1 SV=4)

HSP 1 Score: 76.2554 bits (186), Expect = 6.543e-17
Identity = 36/71 (50.70%), Postives = 49/71 (69.01%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 307
            GDLGN+  + +GVA+ +  D  + L G N+++GR  V+H   DDLGKGG+  S  TGNAG R ACGV+GL+
Sbjct:   83 GDLGNVTTDTSGVAKGSKQDLFVKLIGQNSILGRTVVIHAGTDDLGKGGNAESKKTGNAGARPACGVIGLS 153          

HSP 2 Score: 31.5722 bits (70), Expect = 6.543e-17
Identity = 12/20 (60.00%), Postives = 12/20 (60.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC S G HFNP    H
Sbjct:   53 DNTNGCTSAGPHFNPFTKEH 72          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_NPVOP (Putative superoxide dismutase [Cu-Zn] OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=SOD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.517e-17
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 2
Query:   95 GDLGNI-VANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+  A    +    + DN I+L GP +++GR+ VVH   DDLG G H LS TTGN+GGRL CG++G+
Sbjct:   79 GDLGNVRSAGCTALTAIHMSDNVITLFGPLSILGRSLVVHTDRDDLGLGEHPLSKTTGNSGGRLGCGIIGV 149          

HSP 2 Score: 33.4982 bits (75), Expect = 8.517e-17
Identity = 12/20 (60.00%), Postives = 13/20 (65.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DT+NGC S G HFNP    H
Sbjct:   49 DTSNGCTSAGEHFNPTRQRH 68          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_ASPFU (Superoxide dismutase [Cu-Zn] OS=Aspergillus fumigatus GN=sodC PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 1.438e-16
Identity = 37/70 (52.86%), Postives = 45/70 (64.29%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN   +A G A  +  D  I L G  +V+GR  VVH   DDLG+GG+E S  TGNAG R ACGV+G+
Sbjct:   83 GDLGNFETDAEGNAVGSKQDKLIKLIGAESVLGRTLVVHAGTDDLGRGGNEESKKTGNAGARPACGVIGI 152          

HSP 2 Score: 34.2686 bits (77), Expect = 1.438e-16
Identity = 13/20 (65.00%), Postives = 13/20 (65.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC S G HFNP   TH
Sbjct:   53 DNTNGCTSAGPHFNPYGKTH 72          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_HUMLT (Superoxide dismutase [Cu-Zn] OS=Humicola lutea PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.440e-16
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGNI  +A G A  ++ D  I + G  +++GR  VVH   DDLG+GG+E S  TGNAG R ACGV+G+
Sbjct:   83 GDLGNIKTDAEGNAVGSVQDKLIKVIGAESILGRTIVVHAGTDDLGRGGNEESKKTGNAGPRPACGVIGI 152          

HSP 2 Score: 32.7278 bits (73), Expect = 1.440e-16
Identity = 12/20 (60.00%), Postives = 13/20 (65.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC S G H+NP   TH
Sbjct:   53 DNTNGCTSAGPHYNPFKKTH 72          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_ASPNG (Superoxide dismutase [Cu-Zn] OS=Aspergillus niger GN=sodC PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.159e-16
Identity = 36/70 (51.43%), Postives = 45/70 (64.29%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN   +A G A  +  D  + L G  +V+GR  VVH   DDLG+GG+E S  TGNAG R ACGV+G+
Sbjct:   83 GDLGNFKTDAEGNAVGSKQDKLVKLIGAESVLGRTLVVHAGTDDLGRGGNEESKKTGNAGPRPACGVIGI 152          

HSP 2 Score: 34.2686 bits (77), Expect = 3.159e-16
Identity = 13/20 (65.00%), Postives = 13/20 (65.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC S G HFNP   TH
Sbjct:   53 DNTNGCTSAGPHFNPYGKTH 72          
The following BLAST results are available for this feature:
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
SODC_CANAL4.736e-1857.75Superoxide dismutase [Cu-Zn] OS=Candida albicans G... [more]
SODC_HAECO1.040e-1754.93Superoxide dismutase [Cu-Zn] OS=Haemonchus contort... [more]
SODE_CAEEL1.733e-1750.72Extracellular superoxide dismutase [Cu-Zn] OS=Caen... [more]
SODE_DIRIM2.264e-1753.33Extracellular superoxide dismutase [Cu-Zn] OS=Diro... [more]
SODC4_DICDI5.039e-1756.52Superoxide dismutase [Cu-Zn] 4 OS=Dictyostelium di... [more]
SODC1_DEBHA6.543e-1750.70Superoxide dismutase [Cu-Zn] 1 OS=Debaryomyces han... [more]
SODC_NPVOP8.517e-1750.70Putative superoxide dismutase [Cu-Zn] OS=Orgyia ps... [more]
SODC_ASPFU1.438e-1652.86Superoxide dismutase [Cu-Zn] OS=Aspergillus fumiga... [more]
SODC_HUMLT1.440e-1651.43Superoxide dismutase [Cu-Zn] OS=Humicola lutea PE=... [more]
SODC_ASPNG3.159e-1651.43Superoxide dismutase [Cu-Zn] OS=Aspergillus niger ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00393 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00393 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623302 ID=BQ623302; Name=BQ623302; organism=Citrus sinensis; type=EST; length=459bp
GATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCTAATAA
CATGACACACCGGTGCCTCCTAAAGATGAAGTGCGACATCGCGTGGTGAC
CTGGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTGT
GGACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCCT
TTGTGGTTCATGAGCTTGAGGATGACCTTGGAAAAGGTGGGCATGAACTT
AGTCTAACCACTGGCAATGCAGGTGGAAGACTGGCATGCGGTGTCGTTGG
CTTGACTCCGGTATGAGATCAGCAAAACCAGTGTGGTTGCACTATTTGCT
GCATGCTTTTTCCAGATTATCAATCGGAGCCAAGTACAATGTTGAAAGTG
AGAGCGTGTAACATAAATTTGTGCAGACAGCTGGTATTAATAAAATAATG
CTTGCGGGC
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