BQ623302

Overview
NameBQ623302
Unique NameBQ623302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length459
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_CAPAN (Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN=SODCC PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.202e-24
Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGNI    +G A  TI D QI L GP +++GR  VVH   DDLGKGGHEL+ TTGNAGGR+ACG++GL
Sbjct:   81 GDLGNITVGEDGTASFTITDEQIPLTGPQSIIGRGVVVHADPDDLGKGGHELTKTTGNAGGRVACGIIGL 150

HSP 2 Score: 35.4242 bits (80), Expect = 3.202e-24
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+STG H+NP    H
Sbjct:   51 DTTNGCMSTGPHYNPAGKEH 70
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC2_XENLA (Superoxide dismutase [Cu-Zn] B OS=Xenopus laevis GN=sod1-B PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 3.202e-24
Identity = 46/72 (63.89%), Postives = 56/72 (77.78%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTP 310
            GDLGN+ A   GVA+  I D+ ISL GPN+++GR  VVHE  DDLGKGG++ SL TGNAGGRLACGV+G +P
Sbjct:   81 GDLGNVTAEG-GVAQFKITDSLISLKGPNSIIGRTAVVHEKADDLGKGGNDESLKTGNAGGRLACGVIGYSP 151

HSP 2 Score: 36.965 bits (84), Expect = 3.202e-24
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC+S G+HFNP N  H
Sbjct:   51 DNTNGCMSAGSHFNPENKNH 70
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_BOMMO (Superoxide dismutase [Cu-Zn] OS=Bombyx mori PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 5.417e-24
Identity = 47/74 (63.51%), Postives = 57/74 (77.03%), Query Frame = 2 
Query:   95 GDLGNIVA-NANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 313
            GDLGNI A   +GV + +I D+QISL GPN+++GR  VVH   DDLG GGHELS TTGNAGGR+ACGV+GL  +
Sbjct:   81 GDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGLAKI 154

HSP 2 Score: 35.039 bits (79), Expect = 5.417e-24
Identity = 13/20 (65.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC S GAHFNP    H
Sbjct:   51 DNTNGCTSAGAHFNPEKQDH 70
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_PRIGL (Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN=sod1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.057e-24
Identity = 46/70 (65.71%), Postives = 53/70 (75.71%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+ AN NGVAE  I D Q+ L G  +++GR  VVHE EDDLGKGG E SL TGNAG RLACGV+G+
Sbjct:   80 GDLGNVEANGNGVAEFEIKDRQLHLSGERSIIGRTLVVHEKEDDLGKGGDEESLRTGNAGSRLACGVIGI 149

HSP 2 Score: 33.113 bits (74), Expect = 7.057e-24
Identity = 12/20 (60.00%), Postives = 14/20 (70.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGCIS G H+NP +  H
Sbjct:   50 DNTNGCISAGPHYNPFSKNH 69
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC2_MESCR (Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum GN=SODCC.2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.022e-23
Identity = 43/70 (61.43%), Postives = 56/70 (80.00%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+VA A+GVAE ++ D QI L G ++++GRA VVH  +DDLG+ GHELS TTGNAG R+ CG++GL
Sbjct:   83 GDLGNVVAGADGVAEVSVRDTQIPLSGQHSILGRAVVVHADQDDLGRTGHELSKTTGNAGARVRCGIIGL 152

HSP 2 Score: 34.6538 bits (78), Expect = 2.022e-23
Identity = 14/20 (70.00%), Postives = 14/20 (70.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC STG HFNP    H
Sbjct:   53 DTTNGCNSTGPHFNPLKKDH 72
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_HALRO (Superoxide dismutase [Cu-Zn] OS=Halocynthia roretzi PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 3.428e-23
Identity = 45/70 (64.29%), Postives = 56/70 (80.00%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGNI A+++GVA   I D  ISL G ++++GRA VVH  EDDLGKGGHE S TTG+AGGRL+CGV+G+
Sbjct:   80 GDLGNITADSSGVATVNITDRMISLTGEHSIIGRAVVVHAGEDDLGKGGHEDSKTTGHAGGRLSCGVIGI 149

HSP 2 Score: 32.3426 bits (72), Expect = 3.428e-23
Identity = 12/20 (60.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC S+G HFNP    H
Sbjct:   50 DLTNGCTSSGGHFNPFKQIH 69
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_XIPGL (Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN=sod1 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.279e-22
Identity = 44/69 (63.77%), Postives = 55/69 (79.71%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVG 301
            GDLGN+ A+ANGVA+  I D +ISL GP +++GR  V+HE  DDLG+GG+E SL TGNAG RLACGV+G
Sbjct:   83 GDLGNVTADANGVAKIDITD-KISLTGPYSIIGRTMVIHEKADDLGRGGNEESLKTGNAGSRLACGVIG 150

HSP 2 Score: 34.2686 bits (77), Expect = 1.279e-22
Identity = 13/20 (65.00%), Postives = 14/20 (70.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGCIS G HFNP +  H
Sbjct:   53 DNTNGCISAGPHFNPASKKH 72
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC1_XENLA (Superoxide dismutase [Cu-Zn] A OS=Xenopus laevis GN=sod1-A PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.664e-22
Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTP 310
            GDLGN+ A   GVA+    D QISL G  +++GR  VVHE +DDLGKGG + SL TGNAGGRLACGV+G  P
Sbjct:   81 GDLGNVTAEG-GVAQFKFTDPQISLKGERSIIGRTAVVHEKQDDLGKGGDDESLKTGNAGGRLACGVIGFCP 151

HSP 2 Score: 36.5798 bits (83), Expect = 1.664e-22
Identity = 13/20 (65.00%), Postives = 14/20 (70.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC+S G HFNP N  H
Sbjct:   51 DNTNGCLSAGPHFNPQNKNH 70
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_CANGA (Superoxide dismutase [Cu-Zn] OS=Candida glabrata GN=SOD1 PE=3 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 2.815e-22
Identity = 45/71 (63.38%), Postives = 53/71 (74.65%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 307
            GDLGNI  +A GVA+  I D+ + L GP +VVGR+ VVH   DDLGKGG+E SL TGNAG R ACGV+GLT
Sbjct:   83 GDLGNIKTDAQGVAKGVITDSLVKLIGPTSVVGRSVVVHAGTDDLGKGGNEESLKTGNAGPRPACGVIGLT 153

HSP 2 Score: 35.4242 bits (80), Expect = 2.815e-22
Identity = 13/20 (65.00%), Postives = 14/20 (70.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC+S G HFNP   TH
Sbjct:   53 DVTNGCVSAGPHFNPFKKTH 72
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_DROVI (Superoxide dismutase [Cu-Zn] OS=Drosophila virilis GN=Sod PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.667e-22
Identity = 42/73 (57.53%), Postives = 53/73 (72.60%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 313
            GDLGNI+AN +G     I D +I+L G N+++GR  VVH   DDLGKGGHELS TTGNAG R+ CGV+G+  +
Sbjct:   81 GDLGNIIANGDGPTPVNICDCKITLLGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGCGVIGIAKI 153

HSP 2 Score: 33.113 bits (74), Expect = 3.667e-22
Identity = 12/20 (60.00%), Postives = 14/20 (70.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC+S+G HFNP    H
Sbjct:   51 DNTNGCMSSGPHFNPYQKEH 70
The following BLAST results are available for this feature:
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
SODC_CAPAN3.202e-2462.86Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN... [more]
SODC2_XENLA3.202e-2463.89Superoxide dismutase [Cu-Zn] B OS=Xenopus laevis G... [more]
SODC_BOMMO5.417e-2463.51Superoxide dismutase [Cu-Zn] OS=Bombyx mori PE=1 S... [more]
SODC_PRIGL7.057e-2465.71Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN... [more]
SODC2_MESCR2.022e-2361.43Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum... [more]
SODC_HALRO3.428e-2364.29Superoxide dismutase [Cu-Zn] OS=Halocynthia roretz... [more]
SODC_XIPGL1.279e-2263.77Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN... [more]
SODC1_XENLA1.664e-2261.11Superoxide dismutase [Cu-Zn] A OS=Xenopus laevis G... [more]
SODC_CANGA2.815e-2263.38Superoxide dismutase [Cu-Zn] OS=Candida glabrata G... [more]
SODC_DROVI3.667e-2257.53Superoxide dismutase [Cu-Zn] OS=Drosophila virilis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00393 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00393 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623302 ID=BQ623302; Name=BQ623302; organism=Citrus sinensis; type=EST; length=459bp
GATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCTAATAA
CATGACACACCGGTGCCTCCTAAAGATGAAGTGCGACATCGCGTGGTGAC
CTGGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTGT
GGACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCCT
TTGTGGTTCATGAGCTTGAGGATGACCTTGGAAAAGGTGGGCATGAACTT
AGTCTAACCACTGGCAATGCAGGTGGAAGACTGGCATGCGGTGTCGTTGG
CTTGACTCCGGTATGAGATCAGCAAAACCAGTGTGGTTGCACTATTTGCT
GCATGCTTTTTCCAGATTATCAATCGGAGCCAAGTACAATGTTGAAAGTG
AGAGCGTGTAACATAAATTTGTGCAGACAGCTGGTATTAATAAAATAATG
CTTGCGGGC
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