BQ623302

Overview
NameBQ623302
Unique NameBQ623302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length459
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_DROWI (Superoxide dismutase [Cu-Zn] OS=Drosophila willistoni GN=Sod PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 3.667e-22
Identity = 41/73 (56.16%), Postives = 53/73 (72.60%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 313
            GDLGNI A+ +G     I D++I+L G N+++GR  VVH   DDLGKGGHELS TTGNAG R+ CGV+G+  +
Sbjct:   81 GDLGNIEASGSGPTAVNITDSKITLVGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGCGVIGIAKI 153          

HSP 2 Score: 34.6538 bits (78), Expect = 3.667e-22
Identity = 12/20 (60.00%), Postives = 16/20 (80.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC+S+G HFNP++  H
Sbjct:   51 DNTNGCMSSGPHFNPHSKEH 70          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_RABIT (Superoxide dismutase [Cu-Zn] OS=Oryctolagus cuniculus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 6.208e-22
Identity = 45/72 (62.50%), Postives = 56/72 (77.78%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTP 310
            GDLGN+ A +NGVA+  I D+ ISL G  +V+GR  VVHE EDDLGKGG++ S  TGNAG RLACGV+G++P
Sbjct:   82 GDLGNVTAGSNGVADVLIEDSVISLSGDMSVIGRTLVVHEKEDDLGKGGNDESTKTGNAGSRLACGVIGISP 153          

HSP 2 Score: 27.335 bits (59), Expect = 6.208e-22
Identity = 10/20 (50.00%), Postives = 11/20 (55.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D   GC S G HFNP +  H
Sbjct:   52 DNRQGCTSAGPHFNPLSKKH 71          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_CAVPO (Superoxide dismutase [Cu-Zn] OS=Cavia porcellus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 6.208e-22
Identity = 44/70 (62.86%), Postives = 54/70 (77.14%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+ A A+GVA  +I D+ ISL G N+++GR  VVHE  DDLGKGG+E S  TGNAG RLACGV+G+
Sbjct:   82 GDLGNVTAGADGVANVSIEDSLISLSGANSIIGRTMVVHEKPDDLGKGGNEESTKTGNAGSRLACGVIGI 151          

HSP 2 Score: 29.6462 bits (65), Expect = 6.208e-22
Identity = 11/20 (55.00%), Postives = 12/20 (60.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D T GC S G HFNP +  H
Sbjct:   52 DNTQGCTSAGPHFNPLSKKH 71          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_HORSE (Superoxide dismutase [Cu-Zn] OS=Equus caballus GN=SOD1 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.069e-22
Identity = 42/72 (58.33%), Postives = 55/72 (76.39%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTP 310
            GDLGN+ A+ NG A+  + D+ ISL G ++++GR  VVHE +DDLGKGG+E S  TGNAG RLACGV+G+ P
Sbjct:   83 GDLGNVTADENGKADVDMKDSVISLSGKHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGIAP 154          

HSP 2 Score: 30.4166 bits (67), Expect = 8.069e-22
Identity = 11/20 (55.00%), Postives = 13/20 (65.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D T GC + GAHFNP +  H
Sbjct:   53 DNTQGCTTAGAHFNPLSKKH 72          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_SHEEP (Superoxide dismutase [Cu-Zn] OS=Ovis aries GN=SOD1 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 8.077e-22
Identity = 45/72 (62.50%), Postives = 54/72 (75.00%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTP 310
            GDLGN+ A+ NGVA   IVD  ISL G  +++GR  VVHE  DDLG+GG+E S  TGNAGGRLACGV+G+ P
Sbjct:   81 GDLGNVKADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGGRLACGVIGIAP 152          

HSP 2 Score: 29.6462 bits (65), Expect = 8.077e-22
Identity = 11/20 (55.00%), Postives = 12/20 (60.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D T GC S G HFNP +  H
Sbjct:   51 DNTQGCTSAGPHFNPLSKKH 70          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODE_BRUPA (Extracellular superoxide dismutase [Cu-Zn] OS=Brugia pahangi PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.039e-21
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKG---GHELSLTTGNAGGRLACGVVGLT 307
            GDLGNIVA A+G A   I D  + L GPN+++GR+ VVH  +DDLGKG     + SL TGNAGGR+ACG+V ++
Sbjct:  125 GDLGNIVAGADGTAHIDISDKHVQLLGPNSIIGRSLVVHADQDDLGKGVGDKKDESLKTGNAGGRVACGIVAIS 198          

HSP 2 Score: 40.4318 bits (93), Expect = 1.039e-21
Identity = 16/20 (80.00%), Postives = 16/20 (80.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGCIS G HFNP N TH
Sbjct:   95 DTTNGCISAGPHFNPYNKTH 114          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_NEUCR (Superoxide dismutase [Cu-Zn] OS=Neurospora crassa GN=sod-1 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 1.366e-21
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 307
            GDLGNI  +A G A+ T+ DN + L GP +V+GR  VVH   DDLGKGG+E SL TGNAG R ACGV+G++
Sbjct:   83 GDLGNIETDAQGNAKGTVTDNLVKLIGPESVIGRTVVVHAGTDDLGKGGNEESLKTGNAGPRPACGVIGIS 153          

HSP 2 Score: 35.4242 bits (80), Expect = 1.366e-21
Identity = 13/20 (65.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC S G HFNP+  TH
Sbjct:   53 DNTNGCTSAGPHFNPHGTTH 72          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_CALJA (Superoxide dismutase [Cu-Zn] OS=Callithrix jacchus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.777e-21
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+ A  +GVA+ +I D+ ISL G ++++GR  VVHE  DDLGKGG+E S  TGNAGGRLACGV+G+
Sbjct:   83 GDLGNVTAGKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152          

HSP 2 Score: 29.6462 bits (65), Expect = 1.777e-21
Identity = 11/20 (55.00%), Postives = 12/20 (60.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D T GC S G HFNP +  H
Sbjct:   53 DNTQGCTSAGPHFNPLSRKH 72          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_MOUSE (Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.777e-21
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+ A  +GVA  +I D  ISL G ++++GR  VVHE +DDLGKGG+E S  TGNAG RLACGV+G+
Sbjct:   83 GDLGNVTAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152          

HSP 2 Score: 31.187 bits (69), Expect = 1.777e-21
Identity = 11/20 (55.00%), Postives = 13/20 (65.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D T GC S G HFNP++  H
Sbjct:   53 DNTQGCTSAGPHFNPHSKKH 72          
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_COLGL (Superoxide dismutase [Cu-Zn] OS=Colletotrichum gloeosporioides GN=SOD1 PE=3 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 1.777e-21
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 2
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 307
            GDLGNI  +ANG ++ T+ D+ + L GP +V+GR  VVH   DDLGKG +E SL TGNAG R ACGV+G++
Sbjct:   83 GDLGNIETDANGNSKGTVTDSHVKLIGPESVIGRTIVVHGGTDDLGKGDNEESLKTGNAGPRPACGVIGIS 153          

HSP 2 Score: 37.7354 bits (86), Expect = 1.777e-21
Identity = 14/20 (70.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC S G HFNP+N TH
Sbjct:   53 DNTNGCTSAGPHFNPHNKTH 72          
The following BLAST results are available for this feature:
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
SODC_DROWI3.667e-2256.16Superoxide dismutase [Cu-Zn] OS=Drosophila willist... [more]
SODC_RABIT6.208e-2262.50Superoxide dismutase [Cu-Zn] OS=Oryctolagus cunicu... [more]
SODC_CAVPO6.208e-2262.86Superoxide dismutase [Cu-Zn] OS=Cavia porcellus GN... [more]
SODC_HORSE8.069e-2258.33Superoxide dismutase [Cu-Zn] OS=Equus caballus GN=... [more]
SODC_SHEEP8.077e-2262.50Superoxide dismutase [Cu-Zn] OS=Ovis aries GN=SOD1... [more]
SODE_BRUPA1.039e-2155.41Extracellular superoxide dismutase [Cu-Zn] OS=Brug... [more]
SODC_NEUCR1.366e-2159.15Superoxide dismutase [Cu-Zn] OS=Neurospora crassa ... [more]
SODC_CALJA1.777e-2161.43Superoxide dismutase [Cu-Zn] OS=Callithrix jacchus... [more]
SODC_MOUSE1.777e-2160.00Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=So... [more]
SODC_COLGL1.777e-2156.34Superoxide dismutase [Cu-Zn] OS=Colletotrichum glo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00393 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00393 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623302 ID=BQ623302; Name=BQ623302; organism=Citrus sinensis; type=EST; length=459bp
GATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCTAATAA
CATGACACACCGGTGCCTCCTAAAGATGAAGTGCGACATCGCGTGGTGAC
CTGGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTGT
GGACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCCT
TTGTGGTTCATGAGCTTGAGGATGACCTTGGAAAAGGTGGGCATGAACTT
AGTCTAACCACTGGCAATGCAGGTGGAAGACTGGCATGCGGTGTCGTTGG
CTTGACTCCGGTATGAGATCAGCAAAACCAGTGTGGTTGCACTATTTGCT
GCATGCTTTTTCCAGATTATCAATCGGAGCCAAGTACAATGTTGAAAGTG
AGAGCGTGTAACATAAATTTGTGCAGACAGCTGGTATTAATAAAATAATG
CTTGCGGGC
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