BQ623302

Overview
NameBQ623302
Unique NameBQ623302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length459
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_CERCA (Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata GN=Sod PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.779e-21
Identity = 43/73 (58.90%), Postives = 52/73 (71.23%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 313
            GDLGNI A+ +G  +  I D  I+L G N++VGR  VVH   DDLGKGGHELS TTGNAG RL CGV+G+  +
Sbjct:   81 GDLGNIEASGDGATKVEISDKLITLFGENSIVGRTIVVHADPDDLGKGGHELSKTTGNAGARLGCGVIGICKI 153

HSP 2 Score: 32.3426 bits (72), Expect = 1.779e-21
Identity = 12/20 (60.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC S G HFNP   +H
Sbjct:   51 DNTNGCTSAGPHFNPYGNSH 70
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_DROBS (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila busckii GN=Sod PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.320e-21
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 313
            GDLGNI A  +G     I D +I+L G N+++GR  VVH   DDLGKGGHELS TTGNAG R+ CGV+G+  +
Sbjct:   73 GDLGNITATGDGPTAVDICDCKITLFGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGCGVIGIAKI 145

HSP 2 Score: 33.8834 bits (76), Expect = 2.320e-21
Identity = 12/20 (60.00%), Postives = 14/20 (70.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC+S+G HFNP    H
Sbjct:   43 DNTNGCMSSGPHFNPQGKEH 62
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_CHYAM (Superoxide dismutase [Cu-Zn] OS=Chymomyza amoena GN=Sod PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 3.011e-21
Identity = 41/73 (56.16%), Postives = 53/73 (72.60%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 313
            GDLGNI A  +G  +  I D++I+L G N++VGR  VVH   DDLGKGGHELS +TGNAG R+ CGV+G+  +
Sbjct:   81 GDLGNIEAPGDGPTKVCINDSKITLFGENSIVGRTVVVHADPDDLGKGGHELSKSTGNAGARIGCGVIGICKI 153

HSP 2 Score: 35.039 bits (79), Expect = 3.011e-21
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC+S+G HFNP N  H
Sbjct:   51 DNTNGCMSSGPHFNPLNKEH 70
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_RAT (Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.913e-21
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+ A  +GVA  +I D  ISL G ++++GR  VVHE +DDLGKGG+E S  TGNAG RLACGV+G+
Sbjct:   83 GDLGNVAAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152

HSP 2 Score: 30.0314 bits (66), Expect = 3.913e-21
Identity = 10/20 (50.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D T GC + G HFNP++  H
Sbjct:   53 DNTQGCTTAGPHFNPHSKKH 72
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_DROPS (Superoxide dismutase [Cu-Zn] OS=Drosophila pseudoobscura pseudoobscura GN=Sod PE=3 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 3.918e-21
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 313
            GDLGNI A  +     +I D++I+L G ++++GR  VVH   DDLGKGGHELS TTGNAG R+ CGV+G+  +
Sbjct:   80 GDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHADADDLGKGGHELSKTTGNAGARIGCGVIGIAKI 152

HSP 2 Score: 36.1946 bits (82), Expect = 3.918e-21
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC+S+G HFNP N  H
Sbjct:   50 DNTNGCMSSGPHFNPRNKEH 69
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_MACMU (Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=SOD1 PE=2 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 5.091e-21
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+ A  +GVA+ +  D+ ISL G ++++GR  VVHE  DDLGKGG+E S  TGNAGGRLACGV+G+
Sbjct:   83 GDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152

HSP 2 Score: 29.6462 bits (65), Expect = 5.091e-21
Identity = 11/20 (55.00%), Postives = 12/20 (60.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D T GC S G HFNP +  H
Sbjct:   53 DNTQGCTSAGPHFNPLSRQH 72
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_MACFU (Superoxide dismutase [Cu-Zn] OS=Macaca fuscata fuscata GN=SOD1 PE=2 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 5.091e-21
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+ A  +GVA+ +  D+ ISL G ++++GR  VVHE  DDLGKGG+E S  TGNAGGRLACGV+G+
Sbjct:   83 GDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152

HSP 2 Score: 29.6462 bits (65), Expect = 5.091e-21
Identity = 11/20 (55.00%), Postives = 12/20 (60.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D T GC S G HFNP +  H
Sbjct:   53 DNTQGCTSAGPHFNPLSRQH 72
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_MACFA (Superoxide dismutase [Cu-Zn] OS=Macaca fascicularis GN=SOD1 PE=2 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 5.091e-21
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+ A  +GVA+ +  D+ ISL G ++++GR  VVHE  DDLGKGG+E S  TGNAGGRLACGV+G+
Sbjct:   83 GDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152

HSP 2 Score: 29.6462 bits (65), Expect = 5.091e-21
Identity = 11/20 (55.00%), Postives = 12/20 (60.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D T GC S G HFNP +  H
Sbjct:   53 DNTQGCTSAGPHFNPLSRQH 72
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_HYLLA (Superoxide dismutase [Cu-Zn] OS=Hylobates lar GN=SOD1 PE=2 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 5.091e-21
Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+ A+ +GVA+ +I D+ ISL G ++++GR  VVHE  DDLGKGG+E S  TGNAG RLACGV+G+
Sbjct:   83 GDLGNVTADKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152

HSP 2 Score: 29.6462 bits (65), Expect = 5.091e-21
Identity = 11/20 (55.00%), Postives = 12/20 (60.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D T GC S G HFNP +  H
Sbjct:   53 DNTQGCTSAGPHFNPLSRKH 72
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_PAETN (Superoxide dismutase [Cu-Zn] OS=Paecilomyces tenuipes GN=SOD1 PE=3 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 5.091e-21
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+  +A G A+ +I D+Q+ L GP++V+GR  VVH   DDLGKGG+E SL TGNAG R ACGV+G+
Sbjct:   83 GDLGNVKTDAQGNAKGSIQDSQVKLIGPHSVIGRTVVVHAGTDDLGKGGNEESLKTGNAGPRPACGVIGV 152

HSP 2 Score: 35.4242 bits (80), Expect = 5.091e-21
Identity = 13/20 (65.00%), Postives = 14/20 (70.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC S G HFNP+  TH
Sbjct:   53 DNTNGCTSAGPHFNPHGKTH 72
The following BLAST results are available for this feature:
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
SODC_CERCA1.779e-2158.90Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata... [more]
SODC_DROBS2.320e-2156.16Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_CHYAM3.011e-2156.16Superoxide dismutase [Cu-Zn] OS=Chymomyza amoena G... [more]
SODC_RAT3.913e-2160.00Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus ... [more]
SODC_DROPS3.918e-2153.42Superoxide dismutase [Cu-Zn] OS=Drosophila pseudoo... [more]
SODC_MACMU5.091e-2160.00Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=... [more]
SODC_MACFU5.091e-2160.00Superoxide dismutase [Cu-Zn] OS=Macaca fuscata fus... [more]
SODC_MACFA5.091e-2160.00Superoxide dismutase [Cu-Zn] OS=Macaca fasciculari... [more]
SODC_HYLLA5.091e-2160.00Superoxide dismutase [Cu-Zn] OS=Hylobates lar GN=S... [more]
SODC_PAETN5.091e-2158.57Superoxide dismutase [Cu-Zn] OS=Paecilomyces tenui... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00393 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00393 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623302 ID=BQ623302; Name=BQ623302; organism=Citrus sinensis; type=EST; length=459bp
GATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCTAATAA
CATGACACACCGGTGCCTCCTAAAGATGAAGTGCGACATCGCGTGGTGAC
CTGGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTGT
GGACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCCT
TTGTGGTTCATGAGCTTGAGGATGACCTTGGAAAAGGTGGGCATGAACTT
AGTCTAACCACTGGCAATGCAGGTGGAAGACTGGCATGCGGTGTCGTTGG
CTTGACTCCGGTATGAGATCAGCAAAACCAGTGTGGTTGCACTATTTGCT
GCATGCTTTTTCCAGATTATCAATCGGAGCCAAGTACAATGTTGAAAGTG
AGAGCGTGTAACATAAATTTGTGCAGACAGCTGGTATTAATAAAATAATG
CTTGCGGGC
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