BQ623302

Overview
NameBQ623302
Unique NameBQ623302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length459
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_BOSMU (Superoxide dismutase [Cu-Zn] OS=Bos mutus grunniens GN=SOD1 PE=2 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 5.097e-21
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+ A+ NGVA   IVD+ ISL G  +++GR  VVHE  DDLG+GG+E S  TGNAG RLACGV+G+
Sbjct:   81 GDLGNVTADKNGVAVVDIVDSLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 150

HSP 2 Score: 29.6462 bits (65), Expect = 5.097e-21
Identity = 11/20 (55.00%), Postives = 12/20 (60.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D T GC S G HFNP +  H
Sbjct:   51 DNTQGCTSAGPHFNPLSKKH 70
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_BRUPA (Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=SODC PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.617e-21
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKG---GHELSLTTGNAGGRLACGVVGLT 307
            GDLGNIVA A+G A   I D  + L GPN+++GR+ VVH  +DDLGKG     + SL TGNAG R+ACG+V ++
Sbjct:   82 GDLGNIVAGADGTAHIDISDKHVQLLGPNSIIGRSLVVHADQDDLGKGVGDKKDESLKTGNAGARVACGIVAVS 155

HSP 2 Score: 40.4318 bits (93), Expect = 6.617e-21
Identity = 16/20 (80.00%), Postives = 16/20 (80.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGCIS G HFNP N TH
Sbjct:   52 DTTNGCISAGPHFNPYNKTH 71
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_CEBAP (Superoxide dismutase [Cu-Zn] OS=Cebus apella GN=SOD1 PE=2 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 6.624e-21
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+ A  +GVA+ +I D+ ISL G ++++GR  VVHE  DDLGKGG+E S  TGNAG RLACGV+G+
Sbjct:   83 GDLGNVTAGKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152

HSP 2 Score: 29.6462 bits (65), Expect = 6.624e-21
Identity = 11/20 (55.00%), Postives = 12/20 (60.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D T GC S G HFNP +  H
Sbjct:   53 DNTQGCTSAGPHFNPLSRKH 72
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_CEREL (Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 8.626e-21
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+ A+ NGVA+  IVD+ ISL G ++++GR  VVHE  DDLG+GG+E S  TGNA  RLACGV+G+
Sbjct:   81 GDLGNVTADKNGVAKVDIVDSLISLSGEHSIIGRTMVVHEKPDDLGRGGNEESTKTGNARNRLACGVIGI 150

HSP 2 Score: 29.6462 bits (65), Expect = 8.626e-21
Identity = 11/20 (55.00%), Postives = 12/20 (60.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D T GC S G HFNP +  H
Sbjct:   51 DNTQGCTSAGPHFNPLSKKH 70
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_PANTR (Superoxide dismutase [Cu-Zn] OS=Pan troglodytes GN=SOD1 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.121e-20
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+ A+ +GVA+ +I D+ ISL G + ++GR  VVHE  DDLGKGG+E S  TGNAG RLACGV+G+
Sbjct:   83 GDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152

HSP 2 Score: 28.8758 bits (63), Expect = 1.121e-20
Identity = 11/20 (55.00%), Postives = 12/20 (60.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D T GC S G HFNP +  H
Sbjct:   53 DNTAGCTSAGPHFNPLSRKH 72
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_HUMAN (Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.121e-20
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+ A+ +GVA+ +I D+ ISL G + ++GR  VVHE  DDLGKGG+E S  TGNAG RLACGV+G+
Sbjct:   83 GDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152

HSP 2 Score: 28.8758 bits (63), Expect = 1.121e-20
Identity = 11/20 (55.00%), Postives = 12/20 (60.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D T GC S G HFNP +  H
Sbjct:   53 DNTAGCTSAGPHFNPLSRKH 72
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_YEAST (Superoxide dismutase [Cu-Zn] OS=Saccharomyces cerevisiae GN=SOD1 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.121e-20
Identity = 41/71 (57.75%), Postives = 52/71 (73.24%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 307
            GD+GN+  + NGVA+ +  D+ I L GP +VVGR+ V+H  +DDLGKG  E SL TGNAG R ACGV+GLT
Sbjct:   83 GDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPRPACGVIGLT 153

HSP 2 Score: 35.4242 bits (80), Expect = 1.121e-20
Identity = 13/20 (65.00%), Postives = 14/20 (70.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC+S G HFNP   TH
Sbjct:   53 DATNGCVSAGPHFNPFKKTH 72
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_ONCVO (Superoxide dismutase [Cu-Zn] OS=Onchocerca volvulus GN=sod-1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.457e-20
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKG---GHELSLTTGNAGGRLACGVVGL 304
            GDLGNI A A+G A  +I D  I L GPN+++GR+ VVH  +DDLGKG     + SL TGNAG R+ACG+V +
Sbjct:   82 GDLGNIEAGADGTAHISISDQHIQLLGPNSIIGRSIVVHADQDDLGKGVGAKKDESLKTGNAGARVACGIVAI 154

HSP 2 Score: 40.4318 bits (93), Expect = 1.457e-20
Identity = 16/20 (80.00%), Postives = 16/20 (80.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGCIS G HFNP N TH
Sbjct:   52 DTTNGCISAGPHFNPYNKTH 71
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_BOVIN (Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.460e-20
Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+ A+ NGVA   IVD  ISL G  +++GR  VVHE  DDLG+GG+E S  TGNAG RLACGV+G+
Sbjct:   81 GDLGNVTADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 150

HSP 2 Score: 29.6462 bits (65), Expect = 1.460e-20
Identity = 11/20 (55.00%), Postives = 12/20 (60.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D T GC S G HFNP +  H
Sbjct:   51 DNTQGCTSAGPHFNPLSKKH 70
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_PIG (Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.460e-20
Identity = 41/71 (57.75%), Postives = 53/71 (74.65%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 307
            GDLGN+ A  +GVA   I D+ I+L G ++++GR  VVHE  DDLG+GG+E S  TGNAG RLACGV+G+T
Sbjct:   82 GDLGNVTAGKDGVATVYIEDSVIALSGDHSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGIT 152

HSP 2 Score: 30.8018 bits (68), Expect = 1.460e-20
Identity = 11/20 (55.00%), Postives = 12/20 (60.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D T GC S G HFNP +  H
Sbjct:   52 DNTQGCTSAGPHFNPESKKH 71
The following BLAST results are available for this feature:
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
SODC_BOSMU5.097e-2161.43Superoxide dismutase [Cu-Zn] OS=Bos mutus grunnien... [more]
SODC_BRUPA6.617e-2154.05Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=... [more]
SODC_CEBAP6.624e-2160.00Superoxide dismutase [Cu-Zn] OS=Cebus apella GN=SO... [more]
SODC_CEREL8.626e-2160.00Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=... [more]
SODC_PANTR1.121e-2060.00Superoxide dismutase [Cu-Zn] OS=Pan troglodytes GN... [more]
SODC_HUMAN1.121e-2060.00Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SO... [more]
SODC_YEAST1.121e-2057.75Superoxide dismutase [Cu-Zn] OS=Saccharomyces cere... [more]
SODC_ONCVO1.457e-2054.79Superoxide dismutase [Cu-Zn] OS=Onchocerca volvulu... [more]
SODC_BOVIN1.460e-2061.43Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1... [more]
SODC_PIG1.460e-2057.75Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00393 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00393 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623302 ID=BQ623302; Name=BQ623302; organism=Citrus sinensis; type=EST; length=459bp
GATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCTAATAA
CATGACACACCGGTGCCTCCTAAAGATGAAGTGCGACATCGCGTGGTGAC
CTGGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTGT
GGACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCCT
TTGTGGTTCATGAGCTTGAGGATGACCTTGGAAAAGGTGGGCATGAACTT
AGTCTAACCACTGGCAATGCAGGTGGAAGACTGGCATGCGGTGTCGTTGG
CTTGACTCCGGTATGAGATCAGCAAAACCAGTGTGGTTGCACTATTTGCT
GCATGCTTTTTCCAGATTATCAATCGGAGCCAAGTACAATGTTGAAAGTG
AGAGCGTGTAACATAAATTTGTGCAGACAGCTGGTATTAATAAAATAATG
CTTGCGGGC
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