BQ623890

Overview
NameBQ623890
Unique NameBQ623890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length475
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_ACIF2 (Tryptophan synthase beta chain OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=trpB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.036e-27
Identity = 39/69 (56.52%), Postives = 47/69 (68.12%), Query Frame = 3
Query:   87 KMKGVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 293
            K  G  EY   TD+EAL AF R  R EGIIPALE+AHALA+  +L PT+     ++VN SGRGDKD+ T
Sbjct:  322 KDTGRAEYVAATDEEALAAFHRLCRTEGIIPALESAHALAHAFRLAPTMRSDQTIIVNLSGRGDKDIHT 390          

HSP 2 Score: 64.3142 bits (155), Expect = 2.036e-27
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 2
Query:    2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103
            DEDGQI+  HSISAGLDYPGVGPEH++LKD GRA
Sbjct:  294 DEDGQILPTHSISAGLDYPGVGPEHAYLKDTGRA 327          
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_PSESY (Tryptophan synthase beta chain OS=Pseudomonas syringae pv. syringae GN=trpB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.650e-27
Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 3
Query:  105 EYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 311
            +Y +VTDDEAL+AF +  RLEGIIPALE+AHALA + K  PTL     +VVN SGRGDKD+QT + +++
Sbjct:  333 QYTSVTDDEALDAFHKCCRLEGIIPALESAHALAEVFKRAPTLPKDHLMVVNLSGRGDKDMQTVMHHME 401          

HSP 2 Score: 59.3066 bits (142), Expect = 2.650e-27
Identity = 25/33 (75.76%), Postives = 30/33 (90.91%), Query Frame = 2
Query:    2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100
            D+DGQII+ HSISAGLDYPG+GPEH++L D GR
Sbjct:  299 DDDGQIIDAHSISAGLDYPGIGPEHAWLHDIGR 331          
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_NITEU (Tryptophan synthase beta chain OS=Nitrosomonas europaea GN=trpB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.651e-27
Identity = 41/66 (62.12%), Postives = 46/66 (69.70%), Query Frame = 3
Query:   96 GVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 293
            G  EY  VTDDEAL AF    R EGIIPALE++HALAY  KL PTL     ++VN SGRGDKD+ T
Sbjct:  323 GRAEYVAVTDDEALAAFHALCRFEGIIPALESSHALAYAAKLAPTLNKDQLLLVNLSGRGDKDMAT 388          

HSP 2 Score: 63.5438 bits (153), Expect = 2.651e-27
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 2
Query:    2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103
            DE+GQIIE HSISAGLDYPGVGPEH++LKD GRA
Sbjct:  292 DENGQIIETHSISAGLDYPGVGPEHAWLKDCGRA 325          
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_NITMU (Tryptophan synthase beta chain OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=trpB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.450e-27
Identity = 37/72 (51.39%), Postives = 48/72 (66.67%), Query Frame = 3
Query:   87 KMKGVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIK 302
            K  G  EY+ +TD++ALEAF      EGIIPALE++HALAY  +L P L     ++VN SGRGDKD+ T  +
Sbjct:  321 KDSGRAEYFGITDEQALEAFHALCHYEGIIPALESSHALAYAARLAPALTSDKLLLVNLSGRGDKDMPTVAR 392          

HSP 2 Score: 64.6994 bits (156), Expect = 3.450e-27
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 2
Query:    2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103
            DE+GQI+E HSISAGLDYPGVGPEH++LKD GRA
Sbjct:  293 DENGQIVETHSISAGLDYPGVGPEHAWLKDSGRA 326          
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_PSEF5 (Tryptophan synthase beta chain OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=trpB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.845e-27
Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = 3
Query:  105 EYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 311
            EY +VTDDEAL AF +  RLEGIIPALE+AHALA + K  P L     +VVN SGRGDKD+QT + ++Q
Sbjct:  331 EYTSVTDDEALAAFHQCCRLEGIIPALESAHALAEVFKRAPNLPKDHLMVVNLSGRGDKDMQTVMHHMQ 399          

HSP 2 Score: 59.3066 bits (142), Expect = 5.845e-27
Identity = 25/33 (75.76%), Postives = 30/33 (90.91%), Query Frame = 2
Query:    2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100
            D+DGQII+ HSISAGLDYPG+GPEH++L D GR
Sbjct:  297 DDDGQIIDAHSISAGLDYPGIGPEHAWLHDIGR 329          
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_METCA (Tryptophan synthase beta chain OS=Methylococcus capsulatus GN=trpB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.609e-27
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 3
Query:   96 GVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 293
            G   Y + TD EALEAF   +R EGIIPALE++HA+AY  KL PTL+    V+VN SGRGDKD+ T
Sbjct:  331 GRASYVSATDAEALEAFHILTRSEGIIPALESSHAVAYALKLAPTLSSDKIVLVNLSGRGDKDIHT 396          

HSP 2 Score: 64.3142 bits (155), Expect = 7.609e-27
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 2
Query:    2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103
            DEDG+IIE HSISAGLDYPGVGPEH++LKD GRA
Sbjct:  300 DEDGEIIETHSISAGLDYPGVGPEHAWLKDCGRA 333          
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_PSEAE (Tryptophan synthase beta chain OS=Pseudomonas aeruginosa GN=trpB PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 9.906e-27
Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = 3
Query:  105 EYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 311
            EY ++TDDEALEAF    RLEGIIPALE++HALA + K  P+L     +VVN SGRGDKD+QT + ++Q
Sbjct:  329 EYTSITDDEALEAFHTCCRLEGIIPALESSHALAEVFKRAPSLPKEHIMVVNLSGRGDKDMQTVMHHMQ 397          

HSP 2 Score: 58.9214 bits (141), Expect = 9.906e-27
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 2
Query:    2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100
            D DGQII+ HSISAGLDYPG+GPEH++L D GR
Sbjct:  295 DADGQIIDAHSISAGLDYPGIGPEHAWLHDTGR 327          
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_CAMAC (Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.782e-26
Identity = 61/78 (78.21%), Postives = 67/78 (85.90%), Query Frame = 3
Query:   81 F*KMKGVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 314
            F K  G  EYY  TD+EALEAFKR SRLEGIIPALET+HALA+LEKLCPTL +GTKVV+N SGRGDKDV TAIK+LQV
Sbjct:  389 FLKDIGRAEYYCCTDEEALEAFKRLSRLEGIIPALETSHALAFLEKLCPTLPNGTKVVLNCSGRGDKDVHTAIKHLQV 466          

HSP 2 Score: 72.4034 bits (176), Expect = 1.144e-12
Identity = 37/75 (49.33%), Postives = 46/75 (61.33%), Query Frame = 2
Query:    2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA*VL*CHR**SIGSFQEVITARGYNPSFGDCSCIGLFGEAMP 226
            D+DGQIIEPHSISAGLDYPGVGPEHSFLKD GRA    C    ++ +F+ +    G  P+      +    +  P
Sbjct:  363 DDDGQIIEPHSISAGLDYPGVGPEHSFLKDIGRAEYYCCTDEEALEAFKRLSRLEGIIPALETSHALAFLEKLCP 437          
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_THET8 (Tryptophan synthase beta chain OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=trpB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.183e-26
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 3
Query:   96 GVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 308
            GV EY +VTD+EALE FK  +RLEGIIPALE+AHA+AY  K+ P +     VV+N SGRGDKDV   ++ L
Sbjct:  344 GVAEYASVTDEEALEGFKLLARLEGIIPALESAHAIAYAAKVVPEMDKDQVVVINLSGRGDKDVTEVMRLL 414          

HSP 2 Score: 54.6842 bits (130), Expect = 2.183e-26
Identity = 24/34 (70.59%), Postives = 26/34 (76.47%), Query Frame = 2
Query:    2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103
            D DGQI   HS+SAGLDYPGVGPEHS+  D G A
Sbjct:  313 DHDGQITPAHSVSAGLDYPGVGPEHSYYADAGVA 346          
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_THET2 (Tryptophan synthase beta chain OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=trpB PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.184e-26
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 3
Query:   96 GVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 308
            GV EY +VTD+EALE FK  +RLEGIIPALE+AHA+AY  K+ P +     VV+N SGRGDKDV   ++ L
Sbjct:  330 GVAEYASVTDEEALEGFKLLARLEGIIPALESAHAIAYAAKVVPEMDKDQVVVINLSGRGDKDVTEVMRLL 400          

HSP 2 Score: 54.6842 bits (130), Expect = 2.184e-26
Identity = 24/34 (70.59%), Postives = 26/34 (76.47%), Query Frame = 2
Query:    2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103
            D DGQI   HS+SAGLDYPGVGPEHS+  D G A
Sbjct:  299 DHDGQITPAHSVSAGLDYPGVGPEHSYYADAGVA 332          
The following BLAST results are available for this feature:
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 410
Match NameE-valueIdentityDescription
TRPB_ACIF22.036e-2756.52Tryptophan synthase beta chain OS=Acidithiobacillu... [more]
TRPB_PSESY2.650e-2759.42Tryptophan synthase beta chain OS=Pseudomonas syri... [more]
TRPB_NITEU2.651e-2762.12Tryptophan synthase beta chain OS=Nitrosomonas eur... [more]
TRPB_NITMU3.450e-2751.39Tryptophan synthase beta chain OS=Nitrosospira mul... [more]
TRPB_PSEF55.845e-2760.87Tryptophan synthase beta chain OS=Pseudomonas fluo... [more]
TRPB_METCA7.609e-2759.09Tryptophan synthase beta chain OS=Methylococcus ca... [more]
TRPB_PSEAE9.906e-2759.42Tryptophan synthase beta chain OS=Pseudomonas aeru... [more]
TRPB_CAMAC1.782e-2678.21Tryptophan synthase beta chain 2, chloroplastic OS... [more]
TRPB_THET82.183e-2659.15Tryptophan synthase beta chain OS=Thermus thermoph... [more]
TRPB_THET22.184e-2659.15Tryptophan synthase beta chain OS=Thermus thermoph... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00970 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00970 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623890 ID=BQ623890; Name=BQ623890; organism=Citrus sinensis; type=EST; length=475bp
GGATGAAGATGGGCAAATAATTGAGCCACACTCCATTAGTGCAGGCTTAG
ATTACCCTGGAGTTGGACCTGAGCATAGTTTTCTGAAAGATGAAGGGCGT
GCGTGAGTACTATAATGTCACAGATGATGAAGCATTGGAAGCTTTCAAGA
GGTCATCACGGCTAGAGGGTATAATCCCAGCTTTGGAGACTGCTCATGCA
TTGGCTTATTTGGAGAAGCTATGCCCAACTCTTGCTGATGGTACTAAGGT
TGTGGTTAACTTCAGTGGCAGAGGTGACAAGGATGTCCAGACAGCGATCA
AATATTTGCAAGTTTGATGGTAATGCTTGTAACCCACAATATATGATTCA
TTTACTGAAAACAAATAAATGGGTTGCTTGAGCTTCTGTTTTTGAATTTT
GTATCATTAGTTATTTCAGAGATGTGAGAACCATCTTATGTAATTTGAGT
TAAAACTTTATATATTACATCTATT
back to top