BQ623890
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_ACIF2 (Tryptophan synthase beta chain OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=trpB PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.036e-27 Identity = 39/69 (56.52%), Postives = 47/69 (68.12%), Query Frame = 3 Query: 87 KMKGVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 293 K G EY TD+EAL AF R R EGIIPALE+AHALA+ +L PT+ ++VN SGRGDKD+ T Sbjct: 322 KDTGRAEYVAATDEEALAAFHRLCRTEGIIPALESAHALAHAFRLAPTMRSDQTIIVNLSGRGDKDIHT 390 HSP 2 Score: 64.3142 bits (155), Expect = 2.036e-27 Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 2 Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103 DEDGQI+ HSISAGLDYPGVGPEH++LKD GRA Sbjct: 294 DEDGQILPTHSISAGLDYPGVGPEHAYLKDTGRA 327
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_PSESY (Tryptophan synthase beta chain OS=Pseudomonas syringae pv. syringae GN=trpB PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.650e-27 Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 3 Query: 105 EYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 311 +Y +VTDDEAL+AF + RLEGIIPALE+AHALA + K PTL +VVN SGRGDKD+QT + +++ Sbjct: 333 QYTSVTDDEALDAFHKCCRLEGIIPALESAHALAEVFKRAPTLPKDHLMVVNLSGRGDKDMQTVMHHME 401 HSP 2 Score: 59.3066 bits (142), Expect = 2.650e-27 Identity = 25/33 (75.76%), Postives = 30/33 (90.91%), Query Frame = 2 Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100 D+DGQII+ HSISAGLDYPG+GPEH++L D GR Sbjct: 299 DDDGQIIDAHSISAGLDYPGIGPEHAWLHDIGR 331
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_NITEU (Tryptophan synthase beta chain OS=Nitrosomonas europaea GN=trpB PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.651e-27 Identity = 41/66 (62.12%), Postives = 46/66 (69.70%), Query Frame = 3 Query: 96 GVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 293 G EY VTDDEAL AF R EGIIPALE++HALAY KL PTL ++VN SGRGDKD+ T Sbjct: 323 GRAEYVAVTDDEALAAFHALCRFEGIIPALESSHALAYAAKLAPTLNKDQLLLVNLSGRGDKDMAT 388 HSP 2 Score: 63.5438 bits (153), Expect = 2.651e-27 Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 2 Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103 DE+GQIIE HSISAGLDYPGVGPEH++LKD GRA Sbjct: 292 DENGQIIETHSISAGLDYPGVGPEHAWLKDCGRA 325
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_NITMU (Tryptophan synthase beta chain OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=trpB PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.450e-27 Identity = 37/72 (51.39%), Postives = 48/72 (66.67%), Query Frame = 3 Query: 87 KMKGVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIK 302 K G EY+ +TD++ALEAF EGIIPALE++HALAY +L P L ++VN SGRGDKD+ T + Sbjct: 321 KDSGRAEYFGITDEQALEAFHALCHYEGIIPALESSHALAYAARLAPALTSDKLLLVNLSGRGDKDMPTVAR 392 HSP 2 Score: 64.6994 bits (156), Expect = 3.450e-27 Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 2 Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103 DE+GQI+E HSISAGLDYPGVGPEH++LKD GRA Sbjct: 293 DENGQIVETHSISAGLDYPGVGPEHAWLKDSGRA 326
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_PSEF5 (Tryptophan synthase beta chain OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=trpB PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 5.845e-27 Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = 3 Query: 105 EYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 311 EY +VTDDEAL AF + RLEGIIPALE+AHALA + K P L +VVN SGRGDKD+QT + ++Q Sbjct: 331 EYTSVTDDEALAAFHQCCRLEGIIPALESAHALAEVFKRAPNLPKDHLMVVNLSGRGDKDMQTVMHHMQ 399 HSP 2 Score: 59.3066 bits (142), Expect = 5.845e-27 Identity = 25/33 (75.76%), Postives = 30/33 (90.91%), Query Frame = 2 Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100 D+DGQII+ HSISAGLDYPG+GPEH++L D GR Sbjct: 297 DDDGQIIDAHSISAGLDYPGIGPEHAWLHDIGR 329
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_METCA (Tryptophan synthase beta chain OS=Methylococcus capsulatus GN=trpB PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 7.609e-27 Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 3 Query: 96 GVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 293 G Y + TD EALEAF +R EGIIPALE++HA+AY KL PTL+ V+VN SGRGDKD+ T Sbjct: 331 GRASYVSATDAEALEAFHILTRSEGIIPALESSHAVAYALKLAPTLSSDKIVLVNLSGRGDKDIHT 396 HSP 2 Score: 64.3142 bits (155), Expect = 7.609e-27 Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 2 Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103 DEDG+IIE HSISAGLDYPGVGPEH++LKD GRA Sbjct: 300 DEDGEIIETHSISAGLDYPGVGPEHAWLKDCGRA 333
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_PSEAE (Tryptophan synthase beta chain OS=Pseudomonas aeruginosa GN=trpB PE=3 SV=2) HSP 1 Score: 81.6481 bits (200), Expect = 9.906e-27 Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = 3 Query: 105 EYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 311 EY ++TDDEALEAF RLEGIIPALE++HALA + K P+L +VVN SGRGDKD+QT + ++Q Sbjct: 329 EYTSITDDEALEAFHTCCRLEGIIPALESSHALAEVFKRAPSLPKEHIMVVNLSGRGDKDMQTVMHHMQ 397 HSP 2 Score: 58.9214 bits (141), Expect = 9.906e-27 Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 2 Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100 D DGQII+ HSISAGLDYPG+GPEH++L D GR Sbjct: 295 DADGQIIDAHSISAGLDYPGIGPEHAWLHDTGR 327
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_CAMAC (Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 1.782e-26 Identity = 61/78 (78.21%), Postives = 67/78 (85.90%), Query Frame = 3 Query: 81 F*KMKGVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 314 F K G EYY TD+EALEAFKR SRLEGIIPALET+HALA+LEKLCPTL +GTKVV+N SGRGDKDV TAIK+LQV Sbjct: 389 FLKDIGRAEYYCCTDEEALEAFKRLSRLEGIIPALETSHALAFLEKLCPTLPNGTKVVLNCSGRGDKDVHTAIKHLQV 466 HSP 2 Score: 72.4034 bits (176), Expect = 1.144e-12 Identity = 37/75 (49.33%), Postives = 46/75 (61.33%), Query Frame = 2 Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA*VL*CHR**SIGSFQEVITARGYNPSFGDCSCIGLFGEAMP 226 D+DGQIIEPHSISAGLDYPGVGPEHSFLKD GRA C ++ +F+ + G P+ + + P Sbjct: 363 DDDGQIIEPHSISAGLDYPGVGPEHSFLKDIGRAEYYCCTDEEALEAFKRLSRLEGIIPALETSHALAFLEKLCP 437
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_THET8 (Tryptophan synthase beta chain OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=trpB PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 2.183e-26 Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 3 Query: 96 GVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 308 GV EY +VTD+EALE FK +RLEGIIPALE+AHA+AY K+ P + VV+N SGRGDKDV ++ L Sbjct: 344 GVAEYASVTDEEALEGFKLLARLEGIIPALESAHAIAYAAKVVPEMDKDQVVVINLSGRGDKDVTEVMRLL 414 HSP 2 Score: 54.6842 bits (130), Expect = 2.183e-26 Identity = 24/34 (70.59%), Postives = 26/34 (76.47%), Query Frame = 2 Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103 D DGQI HS+SAGLDYPGVGPEHS+ D G A Sbjct: 313 DHDGQITPAHSVSAGLDYPGVGPEHSYYADAGVA 346
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_THET2 (Tryptophan synthase beta chain OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=trpB PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 2.184e-26 Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 3 Query: 96 GVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 308 GV EY +VTD+EALE FK +RLEGIIPALE+AHA+AY K+ P + VV+N SGRGDKDV ++ L Sbjct: 330 GVAEYASVTDEEALEGFKLLARLEGIIPALESAHAIAYAAKVVPEMDKDQVVVINLSGRGDKDVTEVMRLL 400 HSP 2 Score: 54.6842 bits (130), Expect = 2.184e-26 Identity = 24/34 (70.59%), Postives = 26/34 (76.47%), Query Frame = 2 Query: 2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103 D DGQI HS+SAGLDYPGVGPEHS+ D G A Sbjct: 299 DHDGQITPAHSVSAGLDYPGVGPEHSYYADAGVA 332 The following BLAST results are available for this feature:
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 410
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Sequences
The
following sequences are available for this feature:
EST sequence >BQ623890 ID=BQ623890; Name=BQ623890; organism=Citrus sinensis; type=EST; length=475bpback to top |