BQ623890

Overview
NameBQ623890
Unique NameBQ623890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length475
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_VIBVU (Tryptophan synthase beta chain OS=Vibrio vulnificus GN=trpB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.240e-11
Identity = 37/73 (50.68%), Postives = 51/73 (69.86%), Query Frame = 3
Query:   96 GVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTK-VVVNFSGRGDKDVQTAIKYLQ 311
            G  EY ++TDDEAL+AF+  +R EGIIPALE++HALA+  K+     +  + +VVN SGRGDKD+ T    L+
Sbjct:  319 GRAEYDSITDDEALDAFQELARSEGIIPALESSHALAHALKMARNNPEKEQLLVVNLSGRGDKDIFTVHAILE 391          
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_HAEIN (Tryptophan synthase beta chain OS=Haemophilus influenzae GN=trpB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.619e-11
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 3
Query:   96 GVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTK-VVVNFSGRGDKDVQTAIKYL 308
            G  +Y ++TD+EAL AF+  ++ EGIIPALE++HALAY  KL     +  + +VVN SGRGDKD+ T  K L
Sbjct:  321 GRADYVSITDEEALNAFQELAKHEGIIPALESSHALAYALKLIKQNPEKEQLLVVNLSGRGDKDIFTVDKIL 392          
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_HAEIE (Tryptophan synthase beta chain OS=Haemophilus influenzae (strain PittEE) GN=trpB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.619e-11
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 3
Query:   96 GVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTK-VVVNFSGRGDKDVQTAIKYL 308
            G  +Y ++TD+EAL AF+  ++ EGIIPALE++HALAY  KL     +  + +VVN SGRGDKD+ T  K L
Sbjct:  321 GRADYVSITDEEALNAFQELAKHEGIIPALESSHALAYALKLIKQNPEKEQLLVVNLSGRGDKDIFTVDKIL 392          
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_HAEI8 (Tryptophan synthase beta chain OS=Haemophilus influenzae (strain 86-028NP) GN=trpB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.619e-11
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 3
Query:   96 GVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTK-VVVNFSGRGDKDVQTAIKYL 308
            G  +Y ++TD+EAL AF+  ++ EGIIPALE++HALAY  KL     +  + +VVN SGRGDKD+ T  K L
Sbjct:  321 GRADYVSITDEEALNAFQELAKHEGIIPALESSHALAYALKLIKQNPEKEQLLVVNLSGRGDKDIFTVDKIL 392          
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_BRASB (Tryptophan synthase beta chain OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=trpB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.619e-11
Identity = 36/60 (60.00%), Postives = 42/60 (70.00%), Query Frame = 3
Query:  108 YYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDV 287
            Y + TDDEAL AF+  SRLEGIIPALE AHA+A + +L P       +VVN  GRGDKDV
Sbjct:  334 YLSATDDEALAAFQLLSRLEGIIPALEPAHAIAKVMELAPKKPKEHLMVVNLCGRGDKDV 393          
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_ACTPJ (Tryptophan synthase beta chain OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=trpB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.619e-11
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 3
Query:   96 GVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTK-VVVNFSGRGDKDVQTAIKYL 308
            G  EY ++T+ EAL+AF+  ++ EGIIPALE++HALAY  KL     D  + +VVN SGRGDKD+ T  K L
Sbjct:  321 GRAEYVSITNQEALDAFQALAQHEGIIPALESSHALAYALKLIAQNPDKEQLLVVNLSGRGDKDIFTVDKIL 392          
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_LEPIN (Tryptophan synthase beta chain OS=Leptospira interrogans GN=trpB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.762e-11
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 3
Query:  105 EYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDV 287
            EY NV D+ AL+AF    R+EGIIPALETAHA  Y + L  T++    +++  SGRGDKDV
Sbjct:  325 EYVNVDDEGALDAFIEVCRIEGIIPALETAHAFRYAKDLARTMSKKENILICLSGRGDKDV 385          
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_LEPIC (Tryptophan synthase beta chain OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=trpB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.762e-11
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 3
Query:  105 EYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDV 287
            EY NV D+ AL+AF    R+EGIIPALETAHA  Y + L  T++    +++  SGRGDKDV
Sbjct:  325 EYVNVDDEGALDAFIEVCRIEGIIPALETAHAFRYAKDLARTMSKKENILICLSGRGDKDV 385          
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_PSYIN (Tryptophan synthase beta chain OS=Psychromonas ingrahamii (strain 37) GN=trpB PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.154e-11
Identity = 36/72 (50.00%), Postives = 45/72 (62.50%), Query Frame = 3
Query:   96 GVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 311
            G  +Y   TDDEAL+AF   S  EGIIPALE+AHALA+  KL         ++VN SGRGDKD+ T  +  +
Sbjct:  319 GRAQYVYATDDEALDAFHELSLKEGIIPALESAHALAHALKLIKHDDKEQIIIVNLSGRGDKDIFTVAEIFE 390          
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_AERHH (Tryptophan synthase beta chain OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=trpB PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.037e-11
Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = 3
Query:   96 GVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKV-VVNFSGRGDKDVQT 293
            G  EY +VTD EAL+AF+  ++ EGIIPALE++HALA+  K+  +  +  +V +VN SGRGDKD+ T
Sbjct:  319 GRAEYPSVTDKEALDAFQELAKSEGIIPALESSHALAHALKMARSEPEKEQVLIVNLSGRGDKDIFT 385          
The following BLAST results are available for this feature:
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 410
Match NameE-valueIdentityDescription
TRPB_VIBVU1.240e-1150.68Tryptophan synthase beta chain OS=Vibrio vulnificu... [more]
TRPB_HAEIN1.619e-1151.39Tryptophan synthase beta chain OS=Haemophilus infl... [more]
TRPB_HAEIE1.619e-1151.39Tryptophan synthase beta chain OS=Haemophilus infl... [more]
TRPB_HAEI81.619e-1151.39Tryptophan synthase beta chain OS=Haemophilus infl... [more]
TRPB_BRASB1.619e-1160.00Tryptophan synthase beta chain OS=Bradyrhizobium s... [more]
TRPB_ACTPJ1.619e-1152.78Tryptophan synthase beta chain OS=Actinobacillus p... [more]
TRPB_LEPIN2.762e-1154.10Tryptophan synthase beta chain OS=Leptospira inter... [more]
TRPB_LEPIC2.762e-1154.10Tryptophan synthase beta chain OS=Leptospira inter... [more]
TRPB_PSYIN6.154e-1150.00Tryptophan synthase beta chain OS=Psychromonas ing... [more]
TRPB_AERHH8.037e-1152.24Tryptophan synthase beta chain OS=Aeromonas hydrop... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00970 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00970 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623890 ID=BQ623890; Name=BQ623890; organism=Citrus sinensis; type=EST; length=475bp
GGATGAAGATGGGCAAATAATTGAGCCACACTCCATTAGTGCAGGCTTAG
ATTACCCTGGAGTTGGACCTGAGCATAGTTTTCTGAAAGATGAAGGGCGT
GCGTGAGTACTATAATGTCACAGATGATGAAGCATTGGAAGCTTTCAAGA
GGTCATCACGGCTAGAGGGTATAATCCCAGCTTTGGAGACTGCTCATGCA
TTGGCTTATTTGGAGAAGCTATGCCCAACTCTTGCTGATGGTACTAAGGT
TGTGGTTAACTTCAGTGGCAGAGGTGACAAGGATGTCCAGACAGCGATCA
AATATTTGCAAGTTTGATGGTAATGCTTGTAACCCACAATATATGATTCA
TTTACTGAAAACAAATAAATGGGTTGCTTGAGCTTCTGTTTTTGAATTTT
GTATCATTAGTTATTTCAGAGATGTGAGAACCATCTTATGTAATTTGAGT
TAAAACTTTATATATTACATCTATT
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