BQ623890 | Citrus Genome Database

Overview


Name	BQ623890
Unique Name	BQ623890
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	475

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_BACCZ (Tryptophan synthase beta chain OS=Bacillus cereus (strain ZK / E33L) GN=trpB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.383e-25
Identity = 35/68 (51.47%), Postives = 53/68 (77.94%), Query Frame = 3

Query:  108 YYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 311
            Y+++TDDEALEAF+  ++ EGIIPALE++HA+AY  KL P + +   +V+  SGRGDKDV++  +Y++
Sbjct:  328 YHSITDDEALEAFQLLTKKEGIIPALESSHAVAYALKLAPKMKEDEGLVICLSGRGDKDVESIKRYME 395

HSP 2 Score: 58.9214 bits (141), Expect = 1.383e-25
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 2

Query:    2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100
            +E+GQI E HSISAGLDYPGVGPEHS LKD GR
Sbjct:  293 NEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGR 325

BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_BACC3 (Tryptophan synthase beta chain OS=Bacillus cereus (strain 03BB102) GN=trpB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.383e-25
Identity = 35/68 (51.47%), Postives = 53/68 (77.94%), Query Frame = 3

Query:  108 YYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 311
            Y+++TDDEALEAF+  ++ EGIIPALE++HA+AY  KL P + +   +V+  SGRGDKDV++  +Y++
Sbjct:  328 YHSITDDEALEAFQLLTKKEGIIPALESSHAVAYALKLAPQMKEDEGLVICLSGRGDKDVESIKRYME 395

HSP 2 Score: 58.9214 bits (141), Expect = 1.383e-25
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 2

Query:    2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100
            +E+GQI E HSISAGLDYPGVGPEHS LKD GR
Sbjct:  293 NEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGR 325

BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_BACAN (Tryptophan synthase beta chain OS=Bacillus anthracis GN=trpB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.383e-25
Identity = 35/68 (51.47%), Postives = 53/68 (77.94%), Query Frame = 3

Query:  108 YYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 311
            Y+++TDDEALEAF+  ++ EGIIPALE++HA+AY  KL P + +   +V+  SGRGDKDV++  +Y++
Sbjct:  328 YHSITDDEALEAFQLLTKKEGIIPALESSHAVAYALKLAPQMKEDEGLVICLSGRGDKDVESIKRYME 395

HSP 2 Score: 58.9214 bits (141), Expect = 1.383e-25
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 2

Query:    2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100
            +E+GQI E HSISAGLDYPGVGPEHS LKD GR
Sbjct:  293 NEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGR 325

BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_BACAH (Tryptophan synthase beta chain OS=Bacillus thuringiensis (strain Al Hakam) GN=trpB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.383e-25
Identity = 35/68 (51.47%), Postives = 53/68 (77.94%), Query Frame = 3

Query:  108 YYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 311
            Y+++TDDEALEAF+  ++ EGIIPALE++HA+AY  KL P + +   +V+  SGRGDKDV++  +Y++
Sbjct:  328 YHSITDDEALEAFQLLTKKEGIIPALESSHAVAYALKLAPQMKEDEGLVICLSGRGDKDVESIKRYME 395

HSP 2 Score: 58.9214 bits (141), Expect = 1.383e-25
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 2

Query:    2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100
            +E+GQI E HSISAGLDYPGVGPEHS LKD GR
Sbjct:  293 NEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGR 325

BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_BACAC (Tryptophan synthase beta chain OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=trpB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.383e-25
Identity = 35/68 (51.47%), Postives = 53/68 (77.94%), Query Frame = 3

Query:  108 YYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 311
            Y+++TDDEALEAF+  ++ EGIIPALE++HA+AY  KL P + +   +V+  SGRGDKDV++  +Y++
Sbjct:  328 YHSITDDEALEAFQLLTKKEGIIPALESSHAVAYALKLAPQMKEDEGLVICLSGRGDKDVESIKRYME 395

HSP 2 Score: 58.9214 bits (141), Expect = 1.383e-25
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 2

Query:    2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100
            +E+GQI E HSISAGLDYPGVGPEHS LKD GR
Sbjct:  293 NEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGR 325

BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_BACAA (Tryptophan synthase beta chain OS=Bacillus anthracis (strain A0248) GN=trpB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.383e-25
Identity = 35/68 (51.47%), Postives = 53/68 (77.94%), Query Frame = 3

Query:  108 YYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 311
            Y+++TDDEALEAF+  ++ EGIIPALE++HA+AY  KL P + +   +V+  SGRGDKDV++  +Y++
Sbjct:  328 YHSITDDEALEAFQLLTKKEGIIPALESSHAVAYALKLAPQMKEDEGLVICLSGRGDKDVESIKRYME 395

HSP 2 Score: 58.9214 bits (141), Expect = 1.383e-25
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 2

Query:    2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100
            +E+GQI E HSISAGLDYPGVGPEHS LKD GR
Sbjct:  293 NEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGR 325

BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_METJA (Tryptophan synthase beta chain OS=Methanocaldococcus jannaschii GN=trpB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.799e-25
Identity = 41/64 (64.06%), Postives = 47/64 (73.44%), Query Frame = 3

Query:  117 VTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 308
            VTDDEALEAF+   RLEGI+PALE++HALAY  KL   L     +V+N SGRGDKDVQT  K L
Sbjct:  337 VTDDEALEAFQLLCRLEGILPALESSHALAYAVKLADKLDKDDIMVINLSGRGDKDVQTVAKAL 400

HSP 2 Score: 57.7658 bits (138), Expect = 1.799e-25
Identity = 28/33 (84.85%), Postives = 29/33 (87.88%), Query Frame = 2

Query:    2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100
            DE GQI E +SISAGLDYPGVGPE SFLKDEGR
Sbjct:  299 DEFGQIEESYSISAGLDYPGVGPELSFLKDEGR 331

BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_BRUSU (Tryptophan synthase beta chain OS=Brucella suis GN=trpB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.799e-25
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 3

Query:   87 KMKGVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 308
            K  G  +Y  + D+EAL+AF+  +R EGIIPALE+AHA+A   K+ PT+     ++VN SGRGDKDV T  K L
Sbjct:  329 KDSGRVDYVPILDNEALDAFQLCTRTEGIIPALESAHAIAQAVKMAPTMGKDKVMIVNLSGRGDKDVHTVGKLL 402

HSP 2 Score: 60.8474 bits (146), Expect = 1.799e-25
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 2

Query:    8 DGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100
            DGQI+E HS+SAGLDYPGVGPEHS+LKD GR
Sbjct:  303 DGQILEGHSVSAGLDYPGVGPEHSWLKDSGR 333

BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_BRUSI (Tryptophan synthase beta chain OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=trpB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.799e-25
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 3

Query:   87 KMKGVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 308
            K  G  +Y  + D+EAL+AF+  +R EGIIPALE+AHA+A   K+ PT+     ++VN SGRGDKDV T  K L
Sbjct:  329 KDSGRVDYVPILDNEALDAFQLCTRTEGIIPALESAHAIAQAVKMAPTMGKDKVMIVNLSGRGDKDVHTVGKLL 402

HSP 2 Score: 60.8474 bits (146), Expect = 1.799e-25
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 2

Query:    8 DGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100
            DGQI+E HS+SAGLDYPGVGPEHS+LKD GR
Sbjct:  303 DGQILEGHSVSAGLDYPGVGPEHSWLKDSGR 333

BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_BRUME (Tryptophan synthase beta chain OS=Brucella melitensis GN=trpB PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.799e-25
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 3

Query:   87 KMKGVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 308
            K  G  +Y  + D+EAL+AF+  +R EGIIPALE+AHA+A   K+ PT+     ++VN SGRGDKDV T  K L
Sbjct:  329 KDSGRVDYVPILDNEALDAFQLCTRTEGIIPALESAHAIAQAVKMAPTMGKDKVMIVNLSGRGDKDVHTVGKLL 402

HSP 2 Score: 60.8474 bits (146), Expect = 1.799e-25
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 2

Query:    8 DGQIIEPHSISAGLDYPGVGPEHSFLKDEGR 100
            DGQI+E HS+SAGLDYPGVGPEHS+LKD GR
Sbjct:  303 DGQILEGHSVSAGLDYPGVGPEHSWLKDSGR 333

The following BLAST results are available for this feature:

BLAST of BQ623890 vs. ExPASy Swiss-Prot

BLAST of BQ623890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 410


Match Name	E-value	Identity	Description
TRPB_BACCZ	1.383e-25	51.47	Tryptophan synthase beta chain OS=Bacillus cereus ...	[more]
TRPB_BACC3	1.383e-25	51.47	Tryptophan synthase beta chain OS=Bacillus cereus ...	[more]
TRPB_BACAN	1.383e-25	51.47	Tryptophan synthase beta chain OS=Bacillus anthrac...	[more]
TRPB_BACAH	1.383e-25	51.47	Tryptophan synthase beta chain OS=Bacillus thuring...	[more]
TRPB_BACAC	1.383e-25	51.47	Tryptophan synthase beta chain OS=Bacillus anthrac...	[more]
TRPB_BACAA	1.383e-25	51.47	Tryptophan synthase beta chain OS=Bacillus anthrac...	[more]
TRPB_METJA	1.799e-25	64.06	Tryptophan synthase beta chain OS=Methanocaldococc...	[more]
TRPB_BRUSU	1.799e-25	51.35	Tryptophan synthase beta chain OS=Brucella suis GN...	[more]
TRPB_BRUSI	1.799e-25	51.35	Tryptophan synthase beta chain OS=Brucella suis (s...	[more]
TRPB_BRUME	1.799e-25	51.35	Tryptophan synthase beta chain OS=Brucella meliten...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_00970 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00970 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623890 ID=BQ623890; Name=BQ623890; organism=Citrus sinensis; type=EST; length=475bp
GGATGAAGATGGGCAAATAATTGAGCCACACTCCATTAGTGCAGGCTTAG
ATTACCCTGGAGTTGGACCTGAGCATAGTTTTCTGAAAGATGAAGGGCGT
GCGTGAGTACTATAATGTCACAGATGATGAAGCATTGGAAGCTTTCAAGA
GGTCATCACGGCTAGAGGGTATAATCCCAGCTTTGGAGACTGCTCATGCA
TTGGCTTATTTGGAGAAGCTATGCCCAACTCTTGCTGATGGTACTAAGGT
TGTGGTTAACTTCAGTGGCAGAGGTGACAAGGATGTCCAGACAGCGATCA
AATATTTGCAAGTTTGATGGTAATGCTTGTAACCCACAATATATGATTCA
TTTACTGAAAACAAATAAATGGGTTGCTTGAGCTTCTGTTTTTGAATTTT
GTATCATTAGTTATTTCAGAGATGTGAGAACCATCTTATGTAATTTGAGT
TAAAACTTTATATATTACATCTATT